PROSITE entry PS51164
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General information about the entry
| Entry name [info] | CBM1_2 |
| Accession [info] | PS51164 |
| Entry type [info] | MATRIX |
| Date [info] |
01-NOV-2005 CREATED;
01-OCT-2013 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00486 |
| Associated ProRule [info] | PRU00597 |
Name and characterization of the entry
| Description [info] | CBM1 (carbohydrate binding type-1) domain profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=37; /DISJOINT: DEFINITION=PROTECT; N1=4; N2=34; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.5836288; R2=0.0081856; TEXT='NScore'; /CUT_OFF: LEVEL=0; SCORE=845; N_SCORE=8.5; MODE=1; TEXT='R'; /CUT_OFF: LEVEL=-1; SCORE=601; N_SCORE=6.5; MODE=1; TEXT='R?'; /DEFAULT: M0=-10; D=-20; I=-20; B1=-1000; E1=-1000; MI=-105; MD=-105; IM=-105; DM=-105; ... A B C D E F G H I K L M N P Q R S T V W Y Z /I: B1=0; BI=-105; BD=-105; /M: SY='G'; M= 8, -8,-10,-12,-10,-20, 11,-14,-21,-13,-19,-14, -3,-12,-11,-15, 5, -4,-13,-26,-20,-11; /M: SY='C'; M= 0, -9, 14,-13, -8,-19,-17,-17,-15,-12,-14,-10, -8,-17, -5,-14, 4, 6, -7,-32,-17, -7; /M: SY='A'; M= 10,-15,-16,-18,-13,-15,-10,-18, 1,-12, -6, -2,-12,-18, -8,-14, 2, -1, 10,-26,-15,-11; /M: SY='P'; M= 5, -5,-24, -5, -1,-25, -3,-14,-20, -2,-23,-14, -3, 9, -2, -9, 5, 0,-16,-27,-20, -3; /M: SY='Q'; M= -4,-12,-24,-13, -3,-16,-19, -1, -8, -4, -4, 0,-10, -9, 2, -2, -9, -7, -7,-23, -8, -2; /M: SY='W'; M=-19,-30,-40,-30,-25, 19,-24, -6,-11,-15,-10,-10,-29,-30,-15,-15,-29,-20,-20, 88, 52,-20; /M: SY='G'; M= 7, -8,-26,-10,-11,-25, 37,-14,-30,-12,-23,-15, -2,-17,-11,-15, 1,-13,-22,-19,-20,-11; /M: SY='Q'; M= -8, -1,-29, -1, 18,-38,-19, 8,-20, 9,-20, -1, -1,-10, 55, 9, 0, -9,-29,-18,-10, 37; /M: SY='C'; M=-10,-20,120,-30,-30,-20,-30,-30,-30,-30,-20,-20,-20,-40,-30,-30,-10,-10,-10,-50,-30,-30; /M: SY='G'; M= 0, -9,-30,-10,-20,-30, 69,-20,-40,-20,-30,-20, 1,-20,-20,-20, 0,-20,-30,-20,-30,-20; /M: SY='G'; M= 0,-10,-30,-10,-20,-30, 70,-20,-40,-20,-30,-20, 0,-20,-20,-20, 0,-20,-30,-20,-30,-20; /I: I=-6; MI=0; MD=-29; IM=0; DM=-29; /M: SY='I'; M= -6, -6,-24,-11, -4,-16,-21,-11, 3, -7, -6, 1, -1,-13, 2, -8, -3, -2, -3,-26,-10, -3; /M: SY='G'; M= -1, 2,-26, -3,-11,-25, 39,-11,-30,-13,-26,-16, 11,-18,-12,-14, 3,-11,-26,-25,-24,-11; /M: SY='W'; M=-20,-29,-36,-31,-26, 32,-26, -6, -8,-18, -6, -8,-27,-30,-20,-16,-27,-18,-16, 71, 50,-22; /M: SY='T'; M= 0, 3,-15, -2, -4,-16,-12, -8,-15, -6,-18,-11, 7, -9, -2, -7, 18, 24, -9,-32,-12, -3; /M: SY='G'; M= 0, -8,-30, -8,-19,-30, 67,-19,-39,-19,-30,-20, 1,-20,-19,-19, 1,-19,-30,-21,-30,-19; /M: SY='P'; M= 3,-12,-18, -9, -3,-25,-10,-18,-19,-10,-23,-17,-11, 32, -9,-17, 1, -4,-18,-30,-25, -8; /M: SY='T'; M= -1, -1,-14, -9, -7,-13,-16,-17,-13, -4,-13, -9, 0,-10, -6, -6, 15, 36, -5,-28,-11, -6; /I: I=-6; MI=0; MD=-29; IM=0; DM=-29; /M: SY='C'; M= 2, -7, 12,-13, -8,-19,-16,-16,-15,-11,-15,-10, -6,-18, -5,-12, 7, 10, -6,-32,-17, -7; /M: SY='C'; M=-10,-20,117,-30,-30,-20,-30,-30,-30,-30,-20,-20,-20,-39,-30,-30, -9, -9,-10,-50,-30,-30; /M: SY='A'; M= 10,-10,-16,-11, -3,-19,-14,-16, -7, -5,-11, -7,-10, -9, -3,-10, 2, 0, 1,-26,-16, -3; /M: SY='S'; M= 12, -3,-15, -4, 1,-19, -5,-13,-18, -7,-22,-16, 1, -3, -3,-11, 20, 10,-11,-31,-18, -1; /M: SY='G'; M= -1,-13,-31,-11,-14,-29, 41,-20,-32,-16,-29,-19, -6, 8,-17,-19, -2,-16,-27,-23,-29,-17; /I: I=-6; MD=-32; /M: SY='Y'; M= -2,-13,-18,-16,-13, 8,-16, -4, -6,-13, -5, -6, -9,-20,-11,-13, -1, 2, -7, 0, 18,-13; D=-6; /I: I=-6; MI=-32; IM=-32; DM=-32; /M: SY='T'; M= -1, -4,-14, -9, -6,-14,-19,-16,-11, 1,-14, -8, -3,-13, -5, -3, 11, 25, -1,-28,-10, -6; /M: SY='C'; M=-10,-20,120,-30,-30,-20,-30,-30,-30,-30,-20,-20,-20,-40,-30,-30,-10,-10,-10,-50,-30,-30; /M: SY='T'; M= -4, -9,-19,-11, -6,-15,-21, -9, -4, 2,-10, -2, -7,-16, -2, -3, -1, 4, 4,-26, -7, -4; /M: SY='K'; M= -1, -8,-22, -9, 0,-12,-18,-10,-12, 7,-13, -6, -8,-14, -2, 0, -3, -3, -5,-19, -3, -2; /M: SY='I'; M= -8,-17,-23,-20,-13, -2,-25,-10, 8,-15, 6, 8,-15,-21, -5,-13,-10, -4, 4,-14, 4, -9; /M: SY='N'; M= -6, 29,-20, 14, -1,-21, 4, 5,-22, -3,-30,-20, 46,-17, -1, -3, 13, 1,-27,-38,-20, -1; /M: SY='D'; M=-11, 16,-31, 27, 17,-33,-12, -5,-29, -2,-26,-22, 3, 16, 2,-10, -1, -9,-27,-33,-21, 8; /I: I=-6; MI=0; MD=-29; IM=0; DM=-29; /M: SY='W'; M=-19,-28,-35,-29,-24, 27,-26, -3, -7,-16, -6, -6,-26,-29,-17,-15,-26,-16,-15, 66, 52,-20; /M: SY='Y'; M=-20,-21,-31,-21,-20, 28,-29, 16, -2,-10, -1, -1,-20,-29, -9,-10,-20,-11,-11, 34, 73,-18; /M: SY='S'; M= 6, -4,-15, -4, -3,-14, -4, -2,-19,-10,-25,-16, 5,-13, -2,-10, 26, 11,-11,-27, -7, -3; /M: SY='Q'; M=-10, 0,-29, 0, 19,-39,-19, 11,-20, 9,-20, -1, 1,-10, 57, 9, 1, -9,-29,-21,-10, 38; /M: SY='C'; M=-10,-20,117,-30,-30,-19,-30,-30,-30,-30,-20,-20,-20,-40,-30,-30,-10,-10,-10,-47,-28,-30; /M: SY='L'; M= -7,-20,-22,-23,-15, -4,-27,-15, 14,-16, 15, 9,-18,-23, -7,-11,-15, -7, 10,-20, -1,-12; /I: E1=0; IE=-105; DE=-105;» more |
Numerical results [info]
| Total number of hits | 125 in 121 different sequences |
| Number of true positive hits | 125 in 121 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 0 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 4 |
| Matrix type [info] | protein_domain |
| Scaling database [info] | window20 |
| Author [info] | N_Hulo |
| Feature key [info] | DOMAIN |
| Feature description [info] | CBM1 |
| Version [info] | 3 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
121 sequences
AXE1_ASPFU (Q4WBW4), AXE1_COPC7 (A8PB24), AXE1_HYPJE (Q99034), AXE1_NEOFI (A1DBP9), AXE1_TALPU (Q8NJP6), CBHB_ASPAC (O59843), CBHB_ASPCL (A1CU44), CBHB_ASPFC (B0Y8K2), CBHB_ASPFU (Q4WM08), CBHB_ASPNC (A2QAI7), CBHB_ASPNG (Q9UVS8), CBHB_ASPTN (Q0CMT2), CBHB_EMENI (Q8NK02), CBHB_NEOFI (A1DNL0), CBHC_ASPCL (A1CCN4), CBHC_ASPFC (B0XWL3), CBHC_ASPFU (Q4WFK4), CBHC_ASPNC (A2QYR9), CBHC_ASPTN (Q0CFP1), CBHC_EMENI (Q5B2E8), CBHC_NEOFI (A1DJQ7), CE12C_PYRO7 (G4NBX2), CEL6A_PODAN (B2ABX7), CEL6A_PYRO7 (G4MM92), CEL7A_THET4 (G2QCS4), CHI2_METAN (Q4U4T0), CHI2_METRA (E9F9R9), CUTI1_VERDA (A0A2J8C362), EG5A_PHACH (Q66NB7), FAEB_TALFU (Q9HE18), FAEB_TALSN (B8M9H9), GCE1_PHACR (P0CT87), GCE1_PODAN (B2ABS0), GCE1_SODAL (A0A1D8EJG8), GCE_CERUI (A0A0A7EQR3), GCE_HYPJQ (G0RV93), GH6D_PODAN (B2ADA5), GUN1_HYPJE (P07981), GUN1_HYPJR (A0A024SNB7), GUN1_TRILO (Q12714), GUN2_HYPJE (P07982), GUN2_HYPJR (A0A024SH20), GUN3_HUMIN (Q12624), GUN3_NEUCR (Q7SDR1), GUN5_HYPJE (P43317), GUNB_FUSOX (P46236), GUNF_FUSOX (P46239), GUNK_FUSOX (P45699), GUX1A_NEUCR (Q7SA23), GUX1B_NEUCR (P38676), GUX1_HUMGT (P15828), GUX1_HYPJE (P62694), GUX1_HYPJR (A0A024RXP8), GUX1_HYPRU (P19355), GUX1_PENJA (Q06886), GUX1_PHACH (P13860), GUX1_TRIHA (Q9P8P3), GUX1_TRIKO (P62695), GUX2_AGABI (Q92400), GUX2_HYPJE (P07987), GUX2_HYPJR (A0A024SH76), GUX3_AGABI (P49075), GUX6_HUMIN (Q9C1S9), GUXC_FUSOX (P46238), LP9A_ASPCL (A1C4H2), LP9A_ASPFC (B0Y9G4), LP9A_ASPFN (B8MXJ7), LP9A_ASPKW (Q96WQ9), LP9A_ASPNC (A2R5N0), LP9A_ASPOR (Q2US83), LP9A_ASPTM (A0A5N6V703), LP9A_ASPTN (Q0CEU4), LP9A_BOTFB (A0A384K4U6), LP9A_HYPJE (O14405), LP9A_HYPJQ (G0R6T8), LP9A_NEOFI (A1DBS6), LP9A_NEUCR (Q7S439), LP9A_PODAN (B2B629), LP9B_EMENI (Q5BCX8), LP9B_PODAN (B2AVF1), LP9B_THET4 (G2QCJ3), LP9B_THETO (A0A1C9CXI1), LP9B_THETT (G2RB73), LP9C_ASPFU (Q4WBU0), LP9C_BOTFB (A0A384JJB6), LP9C_NEUCR (Q7SHI8), LP9E_EMENI (Q5AQA6), LP9E_NEUCR (Q7RWN7), LP9E_PODAN (B2ATL7), LP9G_ASPTM (A0A5N6UV50), LP9G_THETT (G2QZK6), LP9H_PODAN (B2ADG1), LP9H_THET4 (G2Q9T3), LP9J_NEUCR (Q7SHD9), LP9_AGABI (Q00023), LP9_COPC7 (A8NCG7), MANA_HYPJR (Q99036), MANF_ASPCL (A1C8U0), MANF_ASPFC (B0Y9E7), MANF_ASPFN (B8NIV9), MANF_ASPFU (Q4WBS1), MANF_ASPOR (Q2U2I3), MANF_EMENI (Q5AR04), MANF_NEOFI (A1DBV1), PSBP_PORPU (P50272), XG74_HYPJQ (Q7Z9M8), XYN1_HUMGT (P79046), XYN6_PYRGI (Q8NJ73), XYN6_PYRO7 (G4MPQ7), XYNA_PHACH (Q9HEZ1), XYNA_TALFU (Q8WZJ4), XYNB_NEOPA (Q02290), XYNB_PENOX (E7EF85), XYNB_PHACH (B7SIW1), XYNB_TALFU (Q8J0K5), XYNC_NEOPA (Q9UV68), XYNC_PHACH (B7SIW2), XYND_GIBZE (I1S3C6), XYND_TALFU (Q5ZNB1), XYS20_NEOPA (A8TGA1), YKK5_SCHPO (Q9P7F1)» more
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| PDB [Detailed view] |
21 PDB
1AZ6; 1AZH; 1AZJ; 1AZK; 1CBH; 2CBH; 2MWJ; 2MWK; 4BMF; 5X34; 5X35; 5X36; 5X37; 5X38; 5X39; 5X3C; 6RV8; 7YHF; 7YHG; 7YHH; 7YHI » more |