PROSITE entry PS51170
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General information about the entry
| Entry name [info] | CW |
| Accession [info] | PS51170 |
| Entry type [info] | MATRIX |
| Date [info] |
01-DEC-2005 CREATED;
01-OCT-2013 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC51170 |
| Associated ProRule [info] | PRU00591 |
Name and characterization of the entry
| Description [info] | Cell wall-binding repeat profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=20; /DISJOINT: DEFINITION=PROTECT; N1=1; N2=20; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.0656130; R2=0.0082735; TEXT='NScore'; /CUT_OFF: LEVEL=0; SCORE=923; N_SCORE=8.7; MODE=1; TEXT='R'; /CUT_OFF: LEVEL=-1; SCORE=536; N_SCORE=5.5; MODE=1; TEXT='RR'; /DEFAULT: M0=-17; D=-80; I=-80; B1=-200; E1=-200; MI=-255; MD=-255; IM=-255; DM=-255; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=0; BI=-255; BD=-255; /M: SY='Q'; M= 12,-41,-20, 5,-25,-42,-18,-18, 33,-12,-12,-19,-41, 42, 9, 2, 9, 16,-61,-11; /M: SY='T'; M=-23,-54, -5,-24,-37,-19,-45, -3, 7,-35,-38, 59,-41,-12,-42, 10, 65,-17,-68,-15; /M: SY='G'; M=-13,-62,-14, 4,-53, 78,-36,-65,-15,-64,-49,-14,-48, 9, 5,-10,-11,-63,-61,-42; /M: SY='W'; M=-36,-68,-63,-36, 60,-63,-38,-14,-47, 3,-21,-52,-53,-34,-58,-39,-45,-26,138, 36; /M: SY='Q'; M=-22,-60,-54,-24, 6,-43, 0, 30, 13, 0,-22,-27,-59, 55, -9,-38,-11, 37,-57, 12; /M: SY='Q'; M=-35,-46,-18, 14, -9,-51,-12,-19, 34,-39,-28, 36,-45, 44, -9, -3, 41,-27,-24, 17; /M: SY='I'; M=-33,-58, 37, -6,-16,-39,-21, 61,-23, -1,-28, -6,-58,-17,-54,-20, -9, 14,-12, 11; /I: I=-21; MI=0; MD=-65; IM=0; DM=-65; /M: SY='N'; M=-17,-60, 63, -4,-63, 16,-33,-60, 3,-61,-51, 71,-34,-10,-33, 8,-31,-59,-72,-13; /M: SY='G'; M=-35,-61, 30,-22,-55, 72,-39,-69,-13,-61,-58, 45,-44, -1,-46, -1,-20,-65,-65,-22; /I: I=-21; MI=0; MD=-65; IM=0; DM=-65; /M: SY='N'; M=-16,-34, 2, -7,-59, -6, 6,-28, 47,-55,-32, 56,-49, 24,-17, 14, 6,-32,-41,-11; /M: SY='W'; M=-47,-61,-33,-46,-15,-51, -7,-26, 7,-38,-26,-15,-48, -9, -9,-37, 24,-38,141, 41; /M: SY='Y'; M=-44,-66,-59,-59, 36,-64, 2,-36,-45,-17,-21,-57,-68,-30,-21,-38,-35,-26, 37,114; /M: SY='Y'; M=-52,-37,-44,-59, 23,-29, 14,-41,-50,-25,-32,-46,-68,-48,-48,-48,-52,-45, 19,120; /M: SY='F'; M=-26,-45,-54,-64, 95,-64,-47, -5,-57, 25, -7,-48,-69,-42,-49,-35,-47, -4,-36, 22; /M: SY='D'; M=-31,-61, 75, -5,-38, 3,-25,-59, 15,-45,-48, 59,-44,-15,-11, -7,-17,-62,-73,-32; /M: SY='S'; M= 13,-59, 29, 25,-57,-12,-22,-53, 8,-54,-54, 32, 24, 16,-28, 36, -1,-43,-68,-34; /M: SY='D'; M=-30,-59, 69,-10,-53,-22,-38,-53, -6,-47,-57, 67,-47, -1,-42, 25, 4,-56,-30,-15; /M: SY='G'; M=-30,-50,-48,-47,-65, 91,-40,-71,-45,-63,-59, 6,-54,-51,-50,-12,-10,-59,-60,-22; /M: SY='Y'; M= 9,-47,-39, -5,-36, 3, 7, 15, 13,-30,-19, 1,-33, 11, 1, 12, 11, 15,-60, 15; /M: SY='M'; M= 12,-29,-22,-26,-25,-30,-21, -1,-18, 10, 92,-19,-39, 20,-13,-31,-33, -1,-49, 15; /I: E1=0; IE=-255; DE=-255;» more |
Numerical results [info]
| Total number of hits | 276 in 20 different sequences |
| Number of true positive hits | 276 in 20 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 0 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
| Taxonomic range [info] | Bacteriophages, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 32 |
| Matrix type [info] | protein_domain |
| Scaling database [info] | reversed |
| Author [info] | N_Hulo |
| Feature key [info] | REPEAT |
| Feature description [info] | Cell wall-binding |
| Version [info] | 4 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
20 sequences
ALYS_BPDP1 (O03979), ALYS_BPHB3 (P32762), ALYS_STRPN (P06653), GTF1_STRDO (P11001), GTF2_STRDO (P27470), GTFB_STRMU (P08987), GTFC_STRMU (P13470), GTFD_STRMU (P49331), GTFS_STRDO (P29336), LYS_BPCP1 (P15057), LYS_BPCP9 (P19386), LYTB_STRPN (P59205), LYTB_STRR6 (P59206), TCDA_CLODI (P16154), TCDA_CLONO (Q46149), TCDB2_CLODI (Q9EXR0), TCDB_CLODI (P18177), TCSL1_PARSO (Q46342), TCSL2_PARSO (P0DUB4), TCSL3_PARS9 (T0D3N5)» more
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| PDB [Detailed view] |
41 PDB
1GVM; 1H09; 1H8G; 1HCX; 1OBA; 2BML; 2F6E; 2G7C; 2IXU; 2IXV; 2J8F; 2J8G; 2QJ6; 4NBX; 4NBZ; 4NC2; 4NP4; 4R04; 4X36; 5UMI; 6AR6; 6OQ5; 7ML7; 7N8X; 7N95; 7N97; 7N9Q; 7N9R; 7N9S; 7N9Y; 7PL2; 7PL5; 7POG; 7U1Z; 7V1N; 8JB5; 8QEN; 8QEO; 8X2H; 8X2I; 8Y9B » more |