PROSITE entry PS51213
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General information about the entry
| Entry name [info] | ELK |
| Accession [info] | PS51213 |
| Entry type [info] | MATRIX |
| Date [info] |
01-MAY-2006 CREATED;
10-MAY-2017 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC51213 |
| Associated ProRule [info] | PRU00559 |
Name and characterization of the entry
| Description [info] | ELK domain profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=21; /DISJOINT: DEFINITION=PROTECT; N1=3; N2=19; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=0.8947136; R2=0.0174515; TEXT='NScore'; /NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=739.1777954; R2=0.6222222; PRIORITY=1; TEXT='Heuristic 5.0%'; /CUT_OFF: LEVEL=0; SCORE=436; H_SCORE=1010; N_SCORE=8.5; MODE=1; TEXT='!'; /CUT_OFF: LEVEL=-1; SCORE=322; H_SCORE=940; N_SCORE=6.5; MODE=1; TEXT='?'; /DEFAULT: M0=-8; D=-20; I=-20; B1=-100; E1=-100; MI=-105; MD=-105; IM=-105; DM=-105; ... A B C D E F G H I K L M N P Q R S T V W Y Z /I: B1=0; BI=-105; BD=-105; /M: SY='E'; M=-12, 20,-28, 31, 41,-31,-17, -2,-31, 5,-22,-22, 6, -4, 11, -4, 2, -3,-27,-33,-19, 26; /M: SY='L'; M= -9,-23,-21,-26,-15, 1,-29,-18, 16,-23, 32, 14,-22,-24,-10,-17,-20, -3, 7,-21, -2,-13; /M: SY='K'; M=-12, -2,-30, -2, 8,-28,-20, -8,-30, 46,-28,-10, 0,-12, 10, 39,-10,-10,-20,-20,-10, 8; /M: SY='H'; M=-13, 3,-25, 2, 1,-17,-19, 10,-16, 5,-12, -7, 5,-19, 0, 7, -8, -9,-13,-26, -4, -1; /M: SY='E'; M= -6, -5,-26, -4, 13,-21,-19, 12,-18, 2, -8, -2, -4,-14, 13, 8, -7,-10,-18,-24, -7, 11; /M: SY='L'; M=-10,-30,-20,-30,-20, 10,-30,-20, 20,-30, 50, 20,-30,-30,-20,-20,-30,-10, 10,-20, 0,-20; /M: SY='M'; M=-11,-16,-25,-17, -7, -9,-24,-12, -4, 9, 9, 10,-14,-20, -3, 10,-19,-10, -5,-20, -5, -6; /M: SY='Q'; M=-12, 5,-28, 2, 10,-30,-16, 3,-25, 22,-24, -8, 11,-14, 27, 25, -3, -8,-25,-24,-12, 17; /M: SY='K'; M= -7, -3,-30, -3, 2,-30, 3,-13,-33, 32,-30,-13, 0,-13, 2, 17, -7,-13,-23,-20,-15, 2; /M: SY='Y'; M=-20,-22,-28,-24,-22, 40,-30, 12, 0,-14, 2, 0,-20,-30,-16,-12,-20,-10, -8, 26, 70,-22; /M: SY='G'; M= -2, -4,-23, -4, -3,-25, 11,-11,-29, 6,-28,-16, 4,-14, -1, 9, 11, -1,-19,-27,-19, -3; /M: SY='G'; M= -3, -2,-26, 0, 0,-29, 23, -9,-32, -5,-27,-17, 3,-15, 1, -2, 7, -8,-25,-26,-22, 0; /M: SY='Y'; M=-16, -9,-13, -9, -1, -7,-24, 13,-21, 7,-15, -8, -7,-22, 0, 12,-12,-11,-18,-10, 18, -4; /M: SY='L'; M=-10,-30,-23,-33,-23, 7,-33,-23, 30,-30, 40, 20,-27,-27,-20,-23,-27,-10, 16,-20, 0,-23; /M: SY='S'; M= 0, -4,-19, -5, -4,-17, 5,-13,-14,-13,-14,-11, 2,-17, -9,-13, 8, 0, -8,-31,-18, -6; /M: SY='D'; M= 0, 14,-20, 17, 9,-26, -4, -7,-26, -3,-24,-20, 10,-10, 0, -5, 13, 5,-18,-33,-19, 4; /M: SY='L'; M= -9,-30,-20,-31,-23, 7,-31,-23, 25,-29, 41, 19,-29,-29,-21,-21,-26, -9, 17,-21, -1,-23; /M: SY='R'; M=-16,-12,-34,-12, -2,-18,-20, -9,-28, 28,-24,-12, -7,-18, 5, 39,-15,-14,-22, 11, -3, 0; /M: SY='E'; M= -1, -1,-23, 0, 21,-23,-17, -6,-19, 4,-12,-10, -3, -9, 12, 2, 2, 0,-17,-26,-15, 16; /M: SY='E'; M=-10, 10,-30, 20, 60,-30,-20, 0,-30, 10,-20,-20, 0, 0, 20, 0, 0,-10,-30,-30,-20, 40; /M: SY='F'; M=-15,-30,-24,-38,-28, 39,-34,-24, 22,-30, 20, 11,-22,-26,-29,-24,-22,-10, 13, -6, 14,-28; /I: E1=0; IE=-105; DE=-105;» more |
Numerical results [info]
| Total number of hits | 46 in 46 different sequences |
| Number of true positive hits | 46 in 46 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 0 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 1 |
| Matrix type [info] | protein_domain |
| Scaling database [info] | window20 |
| Author [info] | CJA_Sigrist |
| Feature key [info] | DOMAIN |
| Feature description [info] | ELK |
| Version [info] | 5 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
46 sequences
HD1_BRANA (P46606), HLG3_MAIZE (P56669), HSBH1_SOYBN (P46608), KN1_MAIZE (P24345), KN1_SOLLC (Q41330), KNAP1_MALDO (O04134), KNAP2_MALDO (O04135), KNAP3_MALDO (O04136), KNAT1_ARATH (P46639), KNAT2_ARATH (P46640), KNAT3_ARATH (P48000), KNAT4_ARATH (P48001), KNAT5_ARATH (P48002), KNAT6_ARATH (Q84JS6), KNAT7_ARATH (Q9FPQ8), KNOS1_ORYSJ (Q9FP29), KNOS2_ORYSJ (Q0E3C3), KNOS3_ORYSJ (Q94LW3), KNOS4_ORYSJ (Q75LX7), KNOS5_ORYSJ (Q75LX9), KNOS6_ORYSJ (P46609), KNOS7_ORYSJ (Q948L5), KNOS8_ORYSJ (Q10ED2), KNOS9_ORYSJ (Q10EC6), KNOSA_ORYSI (A2Y007), KNOSA_ORYSJ (Q7GDL5), KNOSB_ORYSJ (Q94LW4), KNOSC_ORYSI (O65034), KNOSC_ORYSJ (O80416), KNOSD_ORYSJ (Q0J6N4), KNOX1_MAIZE (P56659), KNOX2_MAIZE (P56660), KNOX3_HORVU (Q43484), KNOX3_MAIZE (P56661), KNOX4_MAIZE (P56662), KNOX5_MAIZE (P56663), KNOX6_MAIZE (P56664), KNOX7_MAIZE (P56665), KNOX8_MAIZE (P56666), KNX10_MAIZE (P56667), KNX11_MAIZE (P56668), LET12_SOLLC (O22300), LET6_SOLLC (O22299), RSH1_MAIZE (Q41853), STM_ARATH (Q38874), STM_BRAOL (Q9M6D9)» more
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