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| Entry: PS51216 |
General information about the entry
| Entry name [info] | NEBULIN |
| Accession [info] | PS51216 |
| Entry type [info] | MATRIX |
| Date [info] |
01-JUN-2006 CREATED;
01-OCT-2013 DATA UPDATE; 16-OCT-2019 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC51216 |
| Associated ProRule [info] | PRU00563 |
Name and characterization of the entry
| Description [info] | Nebulin repeat profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=35; /DISJOINT: DEFINITION=PROTECT; N1=1; N2=35; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.3364296; R2=0.0261239; TEXT='NScore'; /CUT_OFF: LEVEL=0; SCORE=275; N_SCORE=8.5; MODE=1; TEXT='R'; /CUT_OFF: LEVEL=-1; SCORE=104; N_SCORE=4.05; MODE=1; TEXT='R?'; /DEFAULT: M0=-7; D=-50; I=-50; B1=-50; E1=-50; MI=-105; MD=-105; IM=-105; DM=-105; ... A B C D E F G H I K L M N P Q R S T V W Y Z /I: B1=0; BI=-105; BD=-105; /M: SY='K'; M= -8, 0,-24, -2, -2,-22, -3, 2,-25, 8,-22,-10, 4,-12, 0, 3, -3, -8,-20,-25,-10, -2; /M: SY='Y'; M=-12,-22,-16,-26,-22, 25,-24, -5, 0,-18, 1, 0,-18,-26,-20,-15,-15, -8, -1, 5, 30,-21; /M: SY='T'; M= -4, -4,-19, -9, -5,-12,-19, -1,-11, -5,-11, -6, -1,-12, -3, -4, 5, 14, -8,-26, -5, -5; /M: SY='T'; M= 0,-12,-17,-15,-11, -9,-16,-14, -3,-14, -4, -3,-10, -9,-10,-14, 0, 4, -2,-24, -8,-11; /M: SY='V'; M= -3,-20,-20,-22,-16, -7,-23,-19, 11,-17, 6, 8,-18, -8,-15,-17, -9, 0, 12,-26,-10,-17; /M: SY='P'; M= -3,-11,-24,-11, -4,-17,-16,-13,-10, -7,-11, -6,-10, 10, -6,-10, -4, -1,-10,-26,-15, -6; /M: SY='D'; M=-16, 36,-29, 50, 21,-35,-10, 0,-34, 1,-26,-25, 15,-10, 2, -8, 0, -9,-27,-36,-18, 12; /M: SY='T'; M= 0, 2,-18, 0, -3,-16,-13,-11,-16, -7,-15,-12, 1, -8, -5, -7, 10, 16, -9,-29,-12, -4; /M: SY='P'; M= -8,-21,-31,-17, -9,-18,-22,-19, -3,-13,-10, -3,-20, 42,-12,-18,-12, -8,-10,-28,-20,-14; /M: SY='E'; M= -8, 7,-27, 12, 16,-23,-16, -3,-19, -1,-16,-12, 1, -5, 5, -6, -3, -8,-18,-28,-13, 10; /M: SY='L'; M=-10,-23,-22,-29,-22, 11,-28,-11, 18,-22, 19, 18,-19,-25,-16,-18,-18, -7, 12,-16, 7,-20; /M: SY='V'; M= -7,-11,-22,-11, -3,-13,-23,-14, -1, -1, 1, 1,-12,-19, -5, 0,-10, -6, 3,-25,-10, -5; /M: SY='H'; M=-13,-10,-26,-11, -3,-15,-22, 22,-17, 0, -7, 0, -5,-20, 8, 12,-11,-11,-17,-17, 2, 0; /M: SY='A'; M= 26,-13, -5,-20,-14,-13, -9,-18, -4,-14, -7, -6,-11,-17,-14,-19, 5, 1, 6,-25,-15,-14; /M: SY='K'; M= -9, -6,-27, -8, 2,-21,-20, -8,-18, 27,-16, -3, -4,-15, 6, 22,-10, -8,-13,-21, -9, 3; /M: SY='K'; M= -6, 3,-24, 1, 6,-21,-16, 5,-19, 8,-18, -9, 5,-14, 6, 6, -3, -7,-17,-23, -7, 5; /M: SY='A'; M= 10, 1,-12, -9,-11,-13, -9,-11, -5, -9,-12, -7, 8,-18,-10,-11, 6, 2, -1,-29,-16,-10; /M: SY='Q'; M= 2, -1,-21, -5, 0,-20, -6, -6,-18, 0,-19,-10, 3,-13, 8, -1, 7, 5,-16,-22, -9, 3; /M: SY='K'; M= -6, 4,-26, 5, 10,-24,-16, -6,-20, 13,-19,-10, 2,-12, 7, 4, -3, -6,-17,-24,-11, 8; /M: SY='L'; M= -7,-13,-22,-19,-13, -6,-24, -9, 11,-16, 12, 11, -9,-22, -5,-13,-13, -7, 4,-24, -5,-10; /M: SY='M'; M= -2,-14,-21,-19,-10, -9,-22,-11, 4,-10, 3, 6,-11,-19, 2, -8, -7, -3, 1,-19, -3, -5; /M: SY='S'; M= 6, 7,-12, 4, 0,-20, -1, -7,-20, -8,-29,-20, 17,-12, 0, -9, 34, 17,-13,-40,-20, 0; /M: SY='D'; M=-10, 20,-27, 26, 23,-29,-13, 0,-27, 6,-23,-18, 11, -9, 8, -2, 1, -7,-25,-32,-16, 15; /M: SY='V'; M= -7,-14,-22,-18,-13, -7,-24,-12, 4, -3, 0, 2, -9,-21, -9, 0,-10, -5, 6,-21, -3,-13; /M: SY='K'; M= -5, -3,-23, -4, 4,-19,-19, -8,-14, 12,-10, -5, -3,-15, 3, 6, -7, -7,-12,-23, -9, 3; /M: SY='Y'; M=-20,-20,-30,-20,-20, 30,-30, 20, 0,-10, 0, 0,-20,-30,-10,-10,-20,-10,-10, 30, 80,-20; /M: SY='K'; M=-12, -3,-28, -4, 5,-25,-20, -1,-27, 35,-25, -9, 0,-14, 8, 34, -8, -8,-17,-22, -8, 5; /M: SY='E'; M= -2, 3,-24, 7, 19,-26,-13, -7,-23, 9,-17,-13, -2, -9, 7, 1, -2, -7,-19,-26,-15, 13; /M: SY='D'; M= -2, 15,-24, 19, 9,-28, -6, -4,-25, 0,-21,-17, 8,-12, 1, -6, 3, -5,-19,-31,-17, 5; /M: SY='Y'; M=-13,-24,-29,-26,-22, 18,-22, -3, -1,-18, 3, 0,-21,-27,-16,-15,-21,-13, -8, 27, 33,-20; /M: SY='E'; M=-10, 11,-27, 15, 28,-27,-15, 8,-26, 7,-21,-15, 7, -9, 13, 3, 0, -8,-25,-30,-14, 20; /M: SY='K'; M= -6, 2,-26, 1, 8,-23,-15, -3,-24, 18,-22,-11, 3,-13, 7, 11, -3, -6,-19,-19,-10, 7; /M: SY='T'; M= -2, -2,-21, -4, -1,-13,-15, -9,-11, -8, -9, -5, -2,-15, -2, -9, 1, 2, -9,-18, -8, -1; /M: SY='K'; M= -9, -8,-27, -9, 0,-21,-21, -9,-15, 25,-15, -2, -5,-14, 3, 18,-10, -7,-10,-22, -8, 0; /M: SY='G'; M= 5, -3,-20, -4, -7,-23, 7, -9,-23, -5,-19,-13, -1,-13, -7, -7, 3, -3,-15,-25,-17, -7; /I: E1=0; IE=-105; DE=-105;» more |
Numerical results [info]
| Total number of hits | 320 in 14 different sequences |
| Number of true positive hits | 320 in 14 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 0 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
| Matrix type [info] | protein_domain |
| Scaling database [info] | reversed |
| Author [info] | PS_Langendijk_Genevaux |
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 181 |
| Feature key [info] | REPEAT |
| Feature description [info] | Nebulin |
| Version [info] | 3 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
14 sequences
LASP1_BOVIN (Q3B7M5 ), LASP1_CAEEL (P34416 ), LASP1_DROME (Q8I7C3 ), LASP1_HUMAN (Q14847 ), LASP1_MOUSE (Q61792 ), LASP1_PONAB (Q5R5W0 ), LASP1_RABIT (O77506 ), LASP1_RAT (Q99MZ8 ), LNEBL_MOUSE (Q9DC07 ), NEBL_HUMAN (O76041 ), NEBL_MOUSE (Q0II04 ), NEBU_HUMAN (P20929 ), NRAP_HUMAN (Q86VF7 ), NRAP_MOUSE (Q80XB4 )» more
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| PDB [Detailed view] |
2 PDB
3I35; 4F14 |
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