PROSITE entry PS51224
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General information about the entry
| Entry name [info] | MVP |
| Accession [info] | PS51224 |
| Entry type [info] | MATRIX |
| Date [info] |
01-JUL-2006 CREATED;
01-OCT-2013 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC51224 |
| Associated ProRule [info] | PRU00571 |
Name and characterization of the entry
| Description [info] | MVP (vault) repeat profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=55; /DISJOINT: DEFINITION=PROTECT; N1=1; N2=55; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.6992440; R2=0.0082208; TEXT='NScore'; /CUT_OFF: LEVEL=0; SCORE=889; N_SCORE=9.0; MODE=1; TEXT='R'; /CUT_OFF: LEVEL=-1; SCORE=353; N_SCORE=4.6; MODE=1; TEXT='R?'; /DEFAULT: M0=-17; D=-80; I=-80; B1=-200; E1=-200; MI=-210; MD=-210; IM=-210; DM=-210; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=0; BI=-210; BD=-210; /M: SY='P'; M= 13,-57, 6, 34,-59, -7, 10,-56, 10,-41,-47, 21, 55, 6, 12, -7, -7,-52,-61,-50; /M: SY='N'; M=-28,-55, 19, 28,-23, 22, 42,-57,-15,-38,-46, 58,-23, 34,-21, -1,-15,-56,-61,-14; /M: SY='Y'; M=-42,-59, 0, 53,-31,-51, -7,-32, -7,-34,-40, -6,-48, 43,-34, 4, 2,-48,-37, 76; /M: SY='C'; M= 51, 84,-51,-50,-21, 39,-51,-15,-49,-47,-43,-22,-54,-48,-54,-12,-38, -9,-57, -3; /M: SY='I'; M=-43, 14,-60,-21,-28,-66,-54, 57,-53, 46,-17,-56,-58,-51,-31,-51,-10, 32,-54, -1; /M: SY='H'; M=-34,-56,-51,-47,-29,-37, 67, 33,-27, 11,-26,-45,-27, -5, 5,-25,-22, 28, 16, 49; /M: SY='V'; M=-10, -4,-55, -8,-32,-59, -3, 19,-49, 43,-21,-53,-57, -1,-27,-15,-37, 50,-57,-11; /M: SY='R'; M=-20, 7, -7, 12,-54,-46, 6,-51, 12,-27, 21, 46,-20, 21, 54, 6,-10,-39,-62,-45; /M: SY='P'; M= 59,-12, 10,-37,-58,-38,-48,-45,-42,-52,-45, 8, 71,-42,-50,-19, -9, -4,-61,-54; /M: SY='V'; M=-29, -1,-51,-49,-13,-57, 32, 3,-13, 33, -5, 2,-56,-44, -7,-12, 14, 43,-57, 4; /M: SY='R'; M= -8, 8, -1, 22,-50, 12, 11,-29, 23,-39,-20, -3,-22, 12, 24, 5,-21, 9,-57, -1; /I: I=-10; MD=-26; /M: SY='D'; M=-27,-59, 51, 14,-63,-51,-43,-58,-16,-60,-54, 19, 0,-19, 25, -1, 40,-35,-73,-54; D=-10; /I: I=-10; MI=0; MD=-26; IM=0; DM=-26; /M: SY='F'; M=-66, 4,-75,-37, 64,-49,-10,-27,-49,-15,-49,-70, -8,-70,-24,-67,-62, -8,-53, 8; D=-10; /I: I=-10; DM=-26; /M: SY='T'; M=-42, -9,-34,-16, 4,-30,-62,-34,-15,-12,-51,-27,-36, -9,-11,-24, 28, 2,-14,-54; D=-10; /I: I=-10; DM=-26; /M: SY='D'; M=-57,-71, 71, 22,-67,-61,-11,-70,-28,-45,-25,-21,-59,-44,-25,-18, -2,-67,-79, -2; D=-10; /I: I=-10; DM=-26; /M: SY='R'; M= -3,-65, -8, 7,-40, 5,-54,-24, 4,-31,-54,-19, 2,-44, 15, 9,-13,-31,-70,-58; D=-10; /I: I=-10; DM=-26; /M: SY='D'; M=-13,-61, 47, 2, -4,-52, 14,-55, -3,-39,-52, 18,-56,-14,-30, 11, 5,-24,-63, 15; D=-10; /I: I=-10; DM=-26; /M: SY='G'; M=-32,-17,-18,-50,-58, 79,-49,-57,-46,-59,-51, -4,-25,-16,-33, 3, 14,-14,-58,-25; D=-10; /I: I=-10; DM=-26; /M: SY='V'; M=-38,-53,-17,-14,-46, 2,-16, 4, 23,-10, -4,-12,-51, 30, -4,-27, 19, 44,-62,-44; D=-10; /I: I=-10; DM=-26; /M: SY='V'; M= 14,-53, -6, 10,-47,-51, -9, -8, 8,-21, -4, -1, 5, 4, -4,-17, 0, 40, 27,-44; D=-10; /I: I=-10; DM=-26; /M: SY='R'; M=-33,-19,-44,-19,-55,-56, 2,-52, 22,-28,-42,-38, 12, 26, 85,-28,-30,-13,-58,-44; D=-10; /I: I=-10; DM=-26; /M: SY='V'; M= -9, 24,-18, 3,-10,-56, 18, 12, 9, 3, -7, -3,-54,-39, 23,-18,-21, 37,-61,-41; D=-10; /I: I=-10; DM=-26; /M: SY='A'; M= 30,-20,-32,-44,-48,-38, -9,-26, 4,-16, -5,-44, 12,-22, 18, 7, 4, 12,-58, 10; D=-10; /I: I=-10; MI=0; MD=-26; IM=0; DM=-26; /M: SY='G'; M=-12,-57,-41,-50,-63, 86,-47,-67,-45,-65,-54, 26, 13, 0,-53,-21,-44,-62,-56,-57; /M: SY='E'; M=-30, -6, 53, 68,-60,-50, 16,-33, 8,-53,-49,-30,-43, 13,-18, 5,-21,-13,-66,-48; /M: SY='R'; M=-15, 9,-36, 31,-54,-51, 10,-47, 29,-25,-42,-36, 12, 20, 49, 5, 7, -3,-60,-46; /M: SY='W'; M=-50,-67,-48, 31, 14,-57,-42,-29, 4,-35,-43,-53,-54,-36, 14,-50,-51,-52,130, 67; /M: SY='M'; M=-32,-51,-63,-57,-26,-63,-49, 35,-55, 54, 63,-32,-59,-50,-54,-52,-29, 32,-53, 0; /M: SY='V'; M=-42, -2,-57,-29, 24,-39, -5, 18,-41, 25, 8,-52,-59,-46, 37,-48,-40, 51,-53, -9; /M: SY='T'; M=-15,-12,-42, -8, 12,-52, 11,-37, 31,-10,-37,-17,-49, 4, 7,-11, 52, 9, 11, 7; /M: SY='G'; M= 19, -9,-25, 3,-53, 65, 20,-55,-13,-36,-46,-34,-48, 9,-22,-18, -3,-26,-54, 0; /I: I=-22; MD=-58; /M: SY='Q'; M=-42,-84, 24, 14,-87,-72,-21,-77,-38,-80,-74,-13, -4, 27,-62,-15,-41,-31,-91,-74; D=-22; /I: I=-22; MD=-58; /M: SY='E'; M=-72, 26, 25, 30,-89,-36,-69,-88,-27,-54,-79,-62, 0,-21,-68,-67,-47,-84,-95,-82; D=-22; /I: I=-22; MI=-58; IM=-58; DM=-58; /M: SY='P'; M=-13, 25,-21, -2,-56,-28,-49,-33,-41,-39,-47,-22, 93,-21,-29, 9, -6,-21, 50,-52; /M: SY='F'; M= -7, 35,-28, 1, 60, 35,-48,-30, -5, 0,-38,-44, 6,-23,-21,-33,-28,-32, 16,-29; /M: SY='P'; M= -5, -1,-27, 24, 28,-49,-44,-32, -3,-15, 28,-40, 44,-23,-43, 17, 40,-20,-54,-39; /M: SY='Y'; M=-23,-56,-53,-31, 43,-59, 38,-29,-28, 35,-24,-51,-61,-19,-45,-48,-44,-13,-27, 86; /M: SY='I'; M=-44,-12,-54,-45, 6,-60, 6, 48, 1, 16, -8,-48, 7, 36,-44,-46,-22, 18,-46, 38; /M: SY='P'; M=-45,-22,-49,-39,-56,-31,-49,-27,-40, -4,-42,-52,108,-45, 10,-28,-40,-24,-59,-56; /M: SY='G'; M=-17,-59, 15, 0,-59, 42, 25,-61,-16,-58,-48,-18, 34, 36, 36, 8,-24,-57,-58,-17; /M: SY='E'; M=-10,-57, 28, 51,-51,-54,-45,-24, -7,-16, -7,-42, 51,-34,-21,-40,-23, 36,-63,-49; /M: SY='H'; M=-27,-54, 7, 34, -9,-50, 47,-39,-17,-10,-38, 21,-49, 3,-19, 4, 21, 9,-52, 38; /M: SY='E'; M=-13, -6,-11, 69,-44,-58,-43,-29,-35, 21, 16,-45,-47,-30,-21,-41,-14, 32,-61,-46; /M: SY='E'; M=-26,-19, 12, 39,-54,-50, 21,-32, 36,-28,-43,-33,-25, 17, 32, 11, 6,-10, 13,-44; /M: SY='V'; M=-28, 10,-16,-17, -6, -9,-52, 28, 1, 13, -6,-48,-27, 5, 0,-45,-38, 51,-58,-40; /I: I=-22; MD=-58; /M: SY='L'; M=-50,-19,-35, 10,-43,-48,-56, 3,-37, 39,-31,-18,-64,-20, -5,-44,-25, 28,-67,-49; D=-22; /I: I=-22; MI=-58; MD=-58; IM=-58; DM=-58; /M: SY='E'; M= 2, -8, -2, 48,-29, 23,-16,-63, 16,-42,-54,-40,-26,-34, 1, 0,-16,-57,-64,-54; D=-22; /I: I=-22; DM=-58; /M: SY='V'; M=-29,-55,-11, -8, -6,-21,-17, 21, 0,-20, -7,-15, 32, 25, 6,-40, 9, 37,-57,-22; /M: SY='V'; M=-15,-10,-20, 13,-31,-54,-13,-11, -3,-18, -5,-41,-52, 26, 41, 1, -1, 43,-58, -7; /M: SY='P'; M=-42, -6, 13, 14,-57,-48, 27,-54, 34,-55,-17, 12, 54, 10, 25, 4, -2,-30, 15,-46; /M: SY='M'; M= 39,-51,-52,-45,-42, 8,-46, -6,-17, 18, 47,-46, 20,-14, 2,-36, -8, 3,-54,-14; /M: SY='Y'; M=-19, -8,-52,-35, 17,-58,-15, 38,-10, 17, 26,-10,-25,-21,-25,-42, 22, 15,-46, 39; /M: SY='M'; M=-20,-51,-51,-48,-12,-54, 27, 32,-18, 5, 33,-28, 13,-44,-30, 11, 26, 32,-56, 4; /M: SY='L'; M=-28,-50,-35,-35,-14,-63,-53, 25,-55, 58, 21,-57,-60,-51,-55,-19,-38, 44,-56,-36; /M: SY='S'; M=-36,-15, 29, 23,-29, -7,-14,-29,-11,-22,-14,-13, 19,-33, 3, 43, 32,-45,-60,-15; /I: E1=0; IE=-210; DE=-210;» more |
Numerical results [info]
| Total number of hits | 140 in 18 different sequences |
| Number of true positive hits | 140 in 18 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 0 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 8 |
| Matrix type [info] | protein_domain |
| Scaling database [info] | reversed |
| Author [info] | PS_Langendijk_Genevaux |
| Feature key [info] | REPEAT |
| Feature description [info] | MVP |
| Version [info] | 3 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
18 sequences
MVPA_DICDI (P34118), MVPB_DICDI (P54659), MVP_BOVIN (Q3SYU9), MVP_CHICK (Q5ZMI4), MVP_DANRE (Q6P3L0), MVP_DIPOM (Q90405), MVP_HUMAN (Q14764), MVP_ICTPU (Q9DGM7), MVP_LEIBR (A4H452), MVP_LEIIN (A4HSC9), MVP_LEIMA (Q4QJJ7), MVP_MOUSE (Q9EQK5), MVP_PONAB (Q5R9N2), MVP_RAT (Q62667), MVP_STRPU (Q5EAJ7), MVP_TRYB2 (Q57Z03), MVP_TRYCC (Q4CUM2), MVP_XENLA (Q6PF69)» more
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| PDB [Detailed view] |
12 PDB
1Y7X; 2QZV; 3GF5; 3GNF; 3GNG; 4HL8; 4V60; 6BP7; 6BP8; 7PKR; 7PKY; 7PKZ |