PROSITE entry PS51325
View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission
General information about the entry
Entry name [info] | ALPHA_BOX |
Accession [info] | PS51325 |
Entry type [info] | MATRIX |
Date [info] |
01-JUL-2007 CREATED;
10-MAY-2017 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
PROSITE Doc. [info] | PDOC51325 |
Associated ProRule [info] | PRU00655 |
Name and characterization of the entry
Description [info] | Alpha box DNA-binding domain profile. |
Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=59; /DISJOINT: DEFINITION=PROTECT; N1=6; N2=54; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=3.8848138; R2=0.0188497; TEXT='NScore'; /NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=3052.2575684; R2=1.0101695; PRIORITY=1; TEXT='Heuristic 5.0%'; /CUT_OFF: LEVEL=0; SCORE=245; H_SCORE=3300; N_SCORE=8.5; MODE=1; TEXT='!'; /CUT_OFF: LEVEL=-1; SCORE=139; H_SCORE=3193; N_SCORE=6.5; MODE=1; TEXT='?'; /DEFAULT: B1=*; E1=*; MM=*; II=*; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=-85; E0=*; BM=-1; BD=-38; /M: SY='K'; M= 9,-19,-20,-15,-20,-26,-14, 4, 17,-18,-11,-16, 3,-12,-17, 3, 12, 11,-23,-18; M0=-6; /I: MM=0; MI=-89; MD=-99; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='K'; M= 17,-27,-28,-24,-44,-28,-25,-41, 26,-41,-32,-24, 15,-22,-24, 12,-21,-33,-43,-38; M0=-19; /I: MM=0; MI=-89; MD=-99; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='K'; M=-36,-42,-44,-29,-51,-41,-20,-44, 32, -3,-34,-28,-40,-15, 23,-35, 4,-41,-39,-38; M0=-24; /I: MM=0; MI=-89; MD=-99; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='K'; M=-40,-44,-51,-33,-55,-43,-21,-47, 34,-43,-36,-30,-42,-17, 26,-38,-36,-45,-40,-40; M0=-32; /I: MM=0; MI=-89; MD=-99; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='P'; M= 2, 17,-13, -8,-29,-24,-11,-26, 13,-26,-17,-11, 22, 10,-11, 10,-13,-22,-29, 11; M0=-8; /I: MM=0; MI=-89; MD=-99; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='V'; M=-35,-29,-61,-57,-28,-59,-56, 21,-56, 20,-15,-56,-55,-52,-56,-53,-34, 23,-46,-44; M0=-33; /I: MM=0; MI=-89; MD=-99; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='N'; M=-53,-51,-48,-52,-62,-50,-53,-73,-59,-69,-66, 44,-55,-56,-58,-55,-56,-66,-55,-60; M0=-53; /I: MM=0; MI=-89; MD=-99; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='S'; M= 17,-28, 6,-26,-47, 12,-30,-45,-30,-46,-37,-25, 6,-27,-34, 24,-23,-36,-48,-43; M0=-19; /I: MM=0; MI=-89; MD=-99; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='F'; M=-55,-45,-59,-63, 41,-58,-20,-44,-58,-37,-38,-44,-56,-45,-52,-50,-54,-46, 26, 25; M0=-43; /I: MM=0; MI=-89; MD=-99; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='M'; M=-33,-28,-60,-56,-31,-58,-55, 30,-55,-18, 36,-54,-54,-53,-56,-51,-33, 16,-48,-44; M0=-35; /I: MM=0; MI=-89; MD=-99; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='A'; M= 22,-21,-44,-40,-24, 20,-30, 7,-37, 8,-15,-33,-36,-33,-35,-24,-21,-14,-30,-27; M0=-17; /I: MM=0; MI=-89; MD=-99; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='F'; M=-55,-45,-59,-63, 42,-58,-20,-44,-58,-37,-38,-44,-56,-46,-52,-50,-54,-46,-12, 26; M0=-43; /I: MM=0; MI=-89; MD=-99; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='R'; M=-61,-54,-62,-59,-66,-53,-50,-72,-43,-67,-64,-58,-57,-51, 43,-63,-61,-69,-55,-62; M0=-55; /I: MM=0; MI=-89; MD=-99; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='S'; M= 4, 22,-40,-37,-36,-28,-32,-32,-35,-35,-27, 7,-34,-32,-36, 28, 5, 4,-39,-36; M0=-19; /I: MM=0; MI=-89; MD=-99; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='Y'; M=-44,-37,-56,-56, 29,-53,-21,-30,-52,-26, 18,-43,-52,-42,-48,-45,-43, 4,-14, 39; M0=-33; /I: MM=0; MI=-89; MD=-99; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='Y'; M=-51,-43,-58,-60, -8,-55,-23,-39,-55,-32, 28,-45,-55,-46,-50,-49,-51,-42,-15, 46; M0=-41; /I: MM=0; MI=-89; MD=-99; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='S'; M= 1,-17,-40,-34,-15,-33,-23, 7,-31, 8, 16,-30,-34,-27,-29, 26,-18, -9,-22,-18; M0=-14; /I: MM=0; MI=-89; MD=-99; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='R'; M=-13,-27, 6, -7,-30,-23,-10, 1, 6, -4,-18,-10, 4, 11, 22,-12, 12,-24,-29,-23; M0=-7; /I: MM=-9; MI=-89; MD=-11; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='I'; M=-11,-10,-32,-26,-10,-26,-16, 22,-23, 14, -2,-23,-27,-20,-22, 7, 11, -1,-16,-12; M0=-10; /I: MM=-13; MI=-79; MD=-8; IM=-9; II=-11; DM=-31; DD=-2; /M: SY='N'; M= -7,-15, -2, -3,-25,-13, -9,-24, -7,-25,-17, 27, 26, -6,-11, -7, -9,-19,-26,-20; M0=-9; /I: MM=0; MI=-67; MD=-77; IM=-9; II=-11; DM=-1; DD=-43; /M: SY='I'; M=-35,-31,-60,-54, 11,-55,-45, 24,-52, 15, 18,-52,-51,-44,-49,-48,-34, 18,-36,-36; M0=-29; /I: MM=0; MI=-89; MD=-99; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='F'; M=-15,-17,-24,-19, 26, 1,-15,-13, 3, 6, -9, 6,-29,-15,-19, 1,-14,-12,-21, 20; M0=-7; /I: MM=0; MI=-89; MD=-99; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='N'; M= 2,-29,-12, 5,-32, 14,-10,-30, 7,-29,-20, 15, 13, -6,-12, 10,-14,-25,-31,-24; M0=-8; /I: MM=0; MI=-89; MD=-99; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='Q'; M=-13,-28,-12, 5,-31, 9,-10, 1, -6,-28,-19, 7, 3, 23, 6, 3,-13, 0,-30,-23; M0=-6; /I: MM=0; MI=-89; MD=-99; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='W'; M=-19,-17,-42, 10, 10,-34,-23, 19,-32, 16, -6,-31,-34,-28,-30,-25,-18, 7, 24,-18; M0=-14; /I: MM=0; MI=-89; MD=-99; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='H'; M= 1,-30,-17,-11,-34,-27, 25,-31, 8,-30,-22,-13, 23, -8, 7,-16, 18,-27,-32,-26; M0=-12; /I: MM=0; MI=-89; MD=-99; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='Q'; M=-38,-42,-40,-39,-38,-43,-35,-40,-28,-34, 18,-38,-47, 44,-28,-40,-40,-42,-42,-38; M0=-33; /I: MM=0; MI=-89; MD=-99; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='K'; M= 10,-31,-16,-10,-35,-26,-12,-32, 25,-31,-22, 9,-27, 10, 14,-16, 4,-27,-32,-26; M0=-12; /I: MM=0; MI=-89; MD=-99; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='E'; M=-13,-28, 5, 23,-31,-23, 16,-29, 7,-28,-19, -9,-24, 11,-11, 2,-13, 1,-30, 9; M0=-9; /I: MM=0; MI=-89; MD=-99; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='R'; M=-33,-35,-46,-31,-35,-41,-21, 4, 15, 22,-23,-30,-40,-18, 22,-34,-30,-29,-35,-33; M0=-20; /I: MM=0; MI=-89; MD=-99; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='S'; M=-32,-37,-52,-55,-57,-39,-51,-61,-57,-61,-54,-46,-46,-53,-54, 37,-37,-50,-55,-57; M0=-44; /I: MM=0; MI=-89; MD=-99; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='T'; M= 9,-28,-12, -6,-31, -1,-10,-29, 6,-28,-19, 8, 4, -5, 7, 10, 17,-24,-30,-23; M0=-7; /I: MM=0; MI=-89; MD=-99; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='I'; M=-16,-14,-39,-33, 9,-31,-20, 22, 1, 16, -6,-28,-32,-25,-27,-22, 4, -8,-19, 12; M0=-12; /I: MM=0; MI=-89; MD=-99; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='M'; M=-44,-38,-68,-63,-19,-67,-53, 25,-61, 24, 27,-64,-56,-48,-55,-61,-43,-20,-38,-40; M0=-38; /I: MM=0; MI=-89; MD=-99; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='R'; M= 12,-25,-33,-29,-44, 12,-29,-41,-27,-43,-34,-26,-33,-26, 21, 17, 14,-33,-45,-41; M0=-18; /I: MM=0; MI=-89; MD=-99; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='Q'; M= 2,-18,-20, 11, 7,-27,-14, 4, 12, -1,-10,-16,-27, 17,-17,-16,-14, 10,-22,-18; M0=-6; /I: MM=0; MI=-89; MD=-99; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='M'; M=-16,-14,-38, 2, 8,-31, 15, -9,-28, 18, 26,-27,-31,-24,-26,-22,-15, 5,-18, 11; M0=-12; /I: MM=0; MI=-89; MD=-99; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='W'; M=-70,-55,-65,-69,-51,-56,-56,-76,-69,-69,-69,-67,-60,-68,-64,-74,-71,-74, 63,-48; M0=-65; /I: MM=-1; MI=-37; MD=-99; IM=-2; II=-33; DM=-7; DD=-14; /M: SY='Q'; M= 1,-28,-12, 13,-31, -1, 17,-29, 6,-28,-19, 8,-24, 17,-10, 2, 12,-24,-30,-23; M0=-8; /I: MM=0; MI=-89; MD=-99; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='H'; M= 10,-27,-13, -7,-30,-24, 24,-28, 7, -4,-18, 20,-24, 10, 6,-13,-13, 0,-29,-23; M0=-7; /I: MM=0; MI=-89; MD=-99; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='D'; M=-34,-55, 33, 23,-56,-31, 17,-56,-30,-54,-49,-17,-37,-23,-41,-30,-35,-51,-56,-45; M0=-31; /I: MM=0; MI=-89; MD=-99; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='P'; M=-21,-34,-19,-14,-39,-30, 17,-36, 15,-34,-26,-16, 29, 19, -9, 1,-21,-32,-35,-30; M0=-16; /I: MM=-1; MI=-37; MD=-99; IM=-2; II=-33; DM=-7; DD=-14; /M: SY='F'; M=-15,-15,-33,-27, 26,-30, 26,-10,-24,-13, 18, 20,-31,-21,-24,-21, 5, 5,-19,-15; M0=-12; /I: MM=-28; MI=-89; MD=-2; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='Q'; M=-10,-16, -4, -3,-18,-14, -5,-18, 0,-18,-13, -5,-18, 36, -1, -9,-10,-16,-18,-13; M0=-9; /I: MM=0; MI=-61; MD=-72; IM=-9; II=-11; DM=-1; DD=-45; /M: SY='H'; M=-38,-44,-47,-30,-53,-42, 37,-45, 30,-41,-35,-29,-41, 10, 10,-36,-34,-43,-39,-39; M0=-29; /I: MM=0; MI=-89; MD=-99; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='K'; M= 13,-28,-12, 5,-31, 1,-10,-29, 13,-28,-19, 8,-24, -5,-11, 9, 13,-24,-30,-23; M0=-8; /I: MM=0; MI=-89; MD=-99; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='K'; M= 2,-23,-15, 5,-25,-24,-11, 11, 17, -3,-15, 7,-25, -7,-13, 3, 4, 1,-26,-21; M0=-5; /I: MM=0; MI=-89; MD=-99; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='W'; M=-56,-46,-60,-63, -8,-57,-22,-46,-59,-39,-40,-46,-57,-47,-53,-52,-55,-48, 61, 17; M0=-46; /I: MM=0; MI=-89; MD=-99; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='S'; M= 8,-32, 15, 13,-35,-25,-13,-33, 6,-32,-23, 8,-27, -8,-15, 19,-16,-28,-34,-27; M0=-12; /I: MM=0; MI=-89; MD=-99; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='F'; M=-16,-14,-39,-32, 17,-31,-20, 13,-28, 16, -5,-27,-31, 7, 3,-22,-15, 6,-18, 13; M0=-11; /I: MM=0; MI=-89; MD=-99; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='M'; M=-34,-31,-57,-52, 20,-52,-37, 15,-48, 15, 33,-48,-48,-40,-45,-43,-33,-19,-30, 21; M0=-27; /I: MM=0; MI=-89; MD=-99; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='A'; M= 29, 22,-52,-54,-50,-28,-44,-48,-51,-51,-41,-36,-36,-45,-47, 3, 20,-36,-53,-52; M0=-31; /I: MM=0; MI=-89; MD=-99; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='Q'; M=-17,-31,-16, 5,-35,-26,-12, 1, 22,-31,-22,-13,-27, 23, 15, 2,-16,-27,-32,-26; M0=-12; /I: MM=0; MI=-89; MD=-99; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='A'; M= 17,-27,-13, 12,-29,-24, 15,-26, -7,-27,-18,-11,-25, 11,-12, 2,-13, 15,-29,-23; M0=-9; /I: MM=0; MI=-89; MD=-99; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='Y'; M=-56,-45,-59,-63, -6,-58,-21,-45,-58,-38,-39,-45,-57,-46,-52,-51,-54,-47, 43, 44; M0=-45; /I: MM=0; MI=-89; MD=-99; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='N'; M=-20,-27,-34,-37,-51,-28,-39,-49,-41,-51,-42, 31,-36,-37,-42, 21, 21,-37,-52,-50; M0=-28; /I: MM=0; MI=-89; MD=-99; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='C'; M=-15, 19,-35,-29, 18,-30, 16, 6,-25, 0, -6, 5,-31,-22, 4, 9, 5, 5,-18,-15; M0=-8; /I: MM=0; MI=-89; MD=-99; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='I'; M= 1,-16, 12,-21,-16,-29,-17, 28,-19,-14, 16,-21,-29, 8,-21,-19,-14,-10,-20, 11; M0=-10; /I: MM=0; MI=-89; MD=-99; IM=-9; II=-11; DM=-7; DD=-14; /M: SY='R'; M= 10,-32,-29,-23,-39,-33,-20,-35,-10, -3,-28, 17,-35,-16, 33,-25,-24,-31,-36,-33; M0=-17; /I: B0=*; E1=-10;» more |
Numerical results [info]
Total number of hits | 21 in 21 different sequences |
Number of true positive hits | 21 in 21 different sequences |
Number of 'unknown' hits | 0 |
Number of false positive hits | 0 |
Number of false negative sequences | 0 |
Number of 'partial' sequences | 0 |
Precision (true positives / (true positives + false positives)) | 100.00 % |
Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
Taxonomic range [info] | Eukaryotes |
Maximum number of repetitions [info] | 1 |
Matrix type [info] | protein_domain |
Scaling database [info] | reversed |
Author [info] | CJA_Sigrist |
Feature key [info] | DNA_BIND |
Feature description [info] | Alpha box |
Version [info] | 5 |
Cross-references [info]
UniProtKB/Swiss-Prot True positive sequences |
21 sequences
FMR1_PODAS (P35692), HMAL1_YEAST (P0CY07), MAT1_ALTAL (O94160), MAT1_COCC2 (O13402), MAT1_COCCY (Q9Y8D1), MAT1_COCEL (Q9Y8C7), MAT1_COCHE (Q02990), MAT1_COCSA (Q9P446), MAT1_CURKU (Q9Y8D3), MAT1_FUSOX (O59851), MATA_NEUAF (Q02292), MATA_NEUCR (P19392), MTA1_SOREQ (O13595), MTA1_SORFI (O13596), MTA1_SORMK (O42837), MTAL1_CANAL (Q9UW19), MTAL1_CANGA (Q874P0), MTAL1_KLULA (Q08398), MTAL1_NAKDE (Q874N0), MTAL1_PICAN (Q707Y7), MTAL1_YEAST (P0CY06)» more
|