PROSITE entry PS51370
View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission
General information about the entry
| PURL [info] | https://purl.expasy.org/prosite/signature/PS51370 |
| Entry name [info] | R |
| Accession [info] | PS51370 |
| Entry type [info] | MATRIX |
| Date [info] |
01-FEB-2008 CREATED;
13-FEB-2019 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC51370 |
| Associated ProRule [info] | PRU00702 |
Name and characterization of the entry
| Description [info] | R domain profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=18; /DISJOINT: DEFINITION=PROTECT; N1=2; N2=17; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.3189075; R2=0.0066435; TEXT='NScore'; /NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=831.7242432; R2=0.5957580; PRIORITY=1; TEXT='Heuristic 5.0%'; /CUT_OFF: LEVEL=0; SCORE=931; H_SCORE=1386; N_SCORE=8.5; MODE=1; TEXT='!'; /CUT_OFF: LEVEL=-1; SCORE=630; H_SCORE=1207; N_SCORE=6.5; MODE=1; TEXT='?'; /DEFAULT: M0=-34; D=-50; I=-50; B1=-500; E1=-500; MI=-105; MD=-105; IM=-105; DM=-105; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=0; BI=-105; BD=-105; /M: SY='K'; M=-35,-60,-46,-34,-50,-49,-54,-55, 82,-54,-39,-34,-22,-42, 38, 21, -3,-45,-55,-51; /M: SY='E'; M= 0,-47, 20, 76,-59,-12,-48,-36,-31,-10, 36,-47,-46,-41,-51,-47,-49, 5,-53,-53; /M: SY='S'; M=-39,-53,-45,-23,-11,-22,-48,-18,-42, -3,-45, 7,-44,-48,-49, 86,-15,-47,-60,-20; /M: SY='R'; M=-48,-57,-51,-49,-48,-12,-51,-60,-23,-56,-45,-54,-50,-27,104,-46,-59,-52, 1,-39; /M: SY='A'; M= 64, 31, -2, 43,-54,-18,-53,-20,-42,-45,-43,-45,-48,-40,-50,-35, -8, 14,-60,-60; /M: SY='K'; M=-44,-59,-44,-32,-50,-49,-53,-54, 90,-51,-21, 11,-41, 24, 31,-41,-49,-54,-53,-50; /M: SY='A'; M= 91,-56,-40,-37,-52,-45,-55,-45,-44,-50,-39,-43,-49,-37,-49,-36, 10,-23,-70,-67; /M: SY='R'; M=-48,-56,-51,-49,-48,-55,-50,-60,-34,-56,-45,-54,-51,-26,107,-46,-59,-51,-45,-39; /M: SY='A'; M= 79,-53,-40, 38,-55, -9,-52,-48,-25,-51,-41,-44,-40, 11,-42,-39,-33,-35,-61,-64; /M: SY='R'; M=-48,-58,-49,-44,-49,-53,-50,-59, 35,-56,-43,-52, 12,-29, 96,-45,-56,-52,-47,-42; /M: SY='A'; M= 89,-61,-44,-49,-56, -5,-59,-49,-48,-55,-43,-47,-52,-41,-53,-40,-42,-41,-71,-72; /M: SY='R'; M=-52,-59,-53, -3,-53,-54,-54,-64, 8,-59,-42,-56,-52,-31, 97,-47,-61,-56,-49,-44; /M: SY='E'; M=-31,-50,-41, 89,-75,-34,-53,-70,-20,-58,-57,-57,-49,-44,-59,-55,-63,-70,-58,-66; /M: SY='R'; M=-58,-67,-61,-60,-58,-57,-61,-70,-44,-66,-55,-64,-60,-36, 96,-55,-30,-61,-56,-49; /I: I=-12; MI=0; MD=-25; IM=0; DM=-25; /M: SY='T'; M= -5,-69,-57,-43,-67,-62,-67,-57,-59,-56,-58,-50,-21,-57,-69, 10, 88,-51,-83,-65; /M: SY='K'; M=-56,-34,-59,-46,-62,-56,-62,-65, 53,-64, 32, 3,-60,-46, 45, 4,-35,-64,-66,-61; /M: SY='E'; M=-12,-55,-18, 76,-75,-65,-58,-62,-13,-61,-59, 6,-54,-49,-62,-57,-43,-70,-65,-42; /M: SY='K'; M=-29,-74,-59,-41,-63,-63,-65,-67, 75,-65, 25,-57,-56,-53, 29,-55,-57,-65,-66,-62; /I: E1=0; IE=-105; DE=-105;» more |
Numerical results [info]
| Total number of hits | 11 in 11 different sequences |
| Number of true positive hits | 11 in 11 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 2 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 84.62 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 1 |
| Matrix type [info] | protein_domain |
| Scaling database [info] | reversed |
| Author [info] | CJA_Sigrist |
| Feature key [info] | DOMAIN |
| Feature description [info] | R |
| Version [info] | 6 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
11 sequences
CYCLD_ANTCI (Q9SBV9), CYCLD_ANTLN (Q9SBV6), CYCLD_ANTMA (O49250), DICH_ANTMA (Q9SNW8), TB1_MAIZE (Q93WI2), TB1_ORYSJ (Q8LN68), TCP12_ARATH (A0AQW4), TCP18_ARATH (A1YKT1), TCP1_ARATH (Q9FYG7), TCP24_ARATH (Q9C758), TCP2_ARATH (Q93V43)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
2 sequences
AUXI1_ARATH (Q9SU08), AUXI2_ARATH (Q0WQ57) |