 |
|
| Entry: PS51370 |
General information about the entry
| Entry name [info] | R |
| Accession [info] | PS51370 |
| Entry type [info] | MATRIX |
| Date [info] |
01-FEB-2008 CREATED;
13-FEB-2019 DATA UPDATE; 22-FEB-2023 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC51370 |
| Associated ProRule [info] | PRU00702 |
Name and characterization of the entry
| Description [info] | R domain profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=18; /DISJOINT: DEFINITION=PROTECT; N1=2; N2=17; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.3189075; R2=0.0066435; TEXT='NScore'; /NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=831.7242432; R2=0.5957580; PRIORITY=1; TEXT='Heuristic 5.0%'; /CUT_OFF: LEVEL=0; SCORE=931; H_SCORE=1386; N_SCORE=8.5; MODE=1; TEXT='!'; /CUT_OFF: LEVEL=-1; SCORE=630; H_SCORE=1207; N_SCORE=6.5; MODE=1; TEXT='?'; /DEFAULT: M0=-34; D=-50; I=-50; B1=-500; E1=-500; MI=-105; MD=-105; IM=-105; DM=-105; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=0; BI=-105; BD=-105; /M: SY='K'; M=-35,-60,-46,-34,-50,-49,-54,-55, 82,-54,-39,-34,-22,-42, 38, 21, -3,-45,-55,-51; /M: SY='E'; M= 0,-47, 20, 76,-59,-12,-48,-36,-31,-10, 36,-47,-46,-41,-51,-47,-49, 5,-53,-53; /M: SY='S'; M=-39,-53,-45,-23,-11,-22,-48,-18,-42, -3,-45, 7,-44,-48,-49, 86,-15,-47,-60,-20; /M: SY='R'; M=-48,-57,-51,-49,-48,-12,-51,-60,-23,-56,-45,-54,-50,-27,104,-46,-59,-52, 1,-39; /M: SY='A'; M= 64, 31, -2, 43,-54,-18,-53,-20,-42,-45,-43,-45,-48,-40,-50,-35, -8, 14,-60,-60; /M: SY='K'; M=-44,-59,-44,-32,-50,-49,-53,-54, 90,-51,-21, 11,-41, 24, 31,-41,-49,-54,-53,-50; /M: SY='A'; M= 91,-56,-40,-37,-52,-45,-55,-45,-44,-50,-39,-43,-49,-37,-49,-36, 10,-23,-70,-67; /M: SY='R'; M=-48,-56,-51,-49,-48,-55,-50,-60,-34,-56,-45,-54,-51,-26,107,-46,-59,-51,-45,-39; /M: SY='A'; M= 79,-53,-40, 38,-55, -9,-52,-48,-25,-51,-41,-44,-40, 11,-42,-39,-33,-35,-61,-64; /M: SY='R'; M=-48,-58,-49,-44,-49,-53,-50,-59, 35,-56,-43,-52, 12,-29, 96,-45,-56,-52,-47,-42; /M: SY='A'; M= 89,-61,-44,-49,-56, -5,-59,-49,-48,-55,-43,-47,-52,-41,-53,-40,-42,-41,-71,-72; /M: SY='R'; M=-52,-59,-53, -3,-53,-54,-54,-64, 8,-59,-42,-56,-52,-31, 97,-47,-61,-56,-49,-44; /M: SY='E'; M=-31,-50,-41, 89,-75,-34,-53,-70,-20,-58,-57,-57,-49,-44,-59,-55,-63,-70,-58,-66; /M: SY='R'; M=-58,-67,-61,-60,-58,-57,-61,-70,-44,-66,-55,-64,-60,-36, 96,-55,-30,-61,-56,-49; /I: I=-12; MI=0; MD=-25; IM=0; DM=-25; /M: SY='T'; M= -5,-69,-57,-43,-67,-62,-67,-57,-59,-56,-58,-50,-21,-57,-69, 10, 88,-51,-83,-65; /M: SY='K'; M=-56,-34,-59,-46,-62,-56,-62,-65, 53,-64, 32, 3,-60,-46, 45, 4,-35,-64,-66,-61; /M: SY='E'; M=-12,-55,-18, 76,-75,-65,-58,-62,-13,-61,-59, 6,-54,-49,-62,-57,-43,-70,-65,-42; /M: SY='K'; M=-29,-74,-59,-41,-63,-63,-65,-67, 75,-65, 25,-57,-56,-53, 29,-55,-57,-65,-66,-62; /I: E1=0; IE=-105; DE=-105;» more |
Numerical results [info]
| Total number of hits | 11 in 11 different sequences |
| Number of true positive hits | 11 in 11 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 2 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 84.62 % |
Comments [info]
| Matrix type [info] | protein_domain |
| Scaling database [info] | reversed |
| Author [info] | CJA_Sigrist |
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 1 |
| Feature key [info] | DOMAIN |
| Feature description [info] | R |
| Version [info] | 6 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
11 sequences
CYCLD_ANTCI (Q9SBV9 ), CYCLD_ANTLN (Q9SBV6 ), CYCLD_ANTMA (O49250 ), DICH_ANTMA (Q9SNW8 ), TB1_MAIZE (Q93WI2 ), TB1_ORYSJ (Q8LN68 ), TCP12_ARATH (A0AQW4 ), TCP18_ARATH (A1YKT1 ), TCP1_ARATH (Q9FYG7 ), TCP24_ARATH (Q9C758 ), TCP2_ARATH (Q93V43 )» more
|
| UniProtKB/Swiss-Prot False negative sequences |
2 sequences
AUXI1_ARATH (Q9SU08 ), AUXI2_ARATH (Q0WQ57 ) |
View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission