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| Entry: PS51373 |
General information about the entry
| Entry name [info] | HIPIP |
| Accession [info] | PS51373 |
| Entry type [info] | MATRIX |
| Date [info] |
01-APR-2008 CREATED;
10-MAY-2017 DATA UPDATE; 12-AUG-2020 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00515 |
| Associated ProRule [info] | PRU00705 |
Name and characterization of the entry
| Description [info] | High potential iron-sulfur proteins family profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=75; /DISJOINT: DEFINITION=PROTECT; N1=6; N2=70; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.6121109; R2=0.0038724; TEXT='NScore'; /NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=11781.4560547; R2=2.8502581; PRIORITY=1; TEXT='Heuristic 5.0%'; /CUT_OFF: LEVEL=0; SCORE=1650; H_SCORE=16484; N_SCORE=9.0; MODE=1; TEXT='!'; /CUT_OFF: LEVEL=-1; SCORE=1004; H_SCORE=14643; N_SCORE=6.5; MODE=1; TEXT='?'; /DEFAULT: M0=-23; D=-80; I=-80; B1=-500; E1=-500; MI=-255; MD=-255; IM=-255; DM=-255; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=0; BI=-255; BD=-255; /M: SY='A'; M= 24, -56, -17, -18, -57, 3, -52, -28, -43, -24, -46, -43, -54, -43, -1, -10, -7, -44, -64, -54; /M: SY='A'; M= 37, -49, -13, -19, -49, -15, -47, -32, -42, -11, -3, -43, -51, 20, -45, -32, -37, 10, -59, -47; /M: SY='T'; M= 12, -49, 25, -34, -20, -14, -43, -44, -40, -27, -7, -32, 26, -39, -47, 8, 26, -40, -60, -45; /M: SY='W'; M= 28, -48, -12, -40, -41, 4, 20, -21, -41, -12, 22, -37, 10, -39, -45, -30, 6, -21, 54, -36; /M: SY='P'; M= 36, -45, -29, 10, -52, -17, 10, -43, -31, -47, -39, 21, 51, -4, -37, 3, -27, -23, -54, -44; /M: SY='T'; M= 10, -45, -14, -12, -40, -22, -2, -13, -2, -3, 14, -8, 8, 0, 12, -26, 25, -12, -53, -37; /M: SY='V'; M= 9, 6, 0, -40, -30, -24, -47, 9, -18, 24, -18, -41, -49, -41, -43, -35, -10, 39, -54, -36; /M: SY='D'; M= 28, -41, 33, 16, -46, 2, -30, -40, -25, -17, -34, -2, 8, 26, -31, 19, 2, -35, -51, -39; /M: SY='E'; M= 15, 7, 10, 58, -47, -39, -31, -38, -21, -25, -35, -29, 40, -1, -6, -25, -6, -9, -51, -42; /M: SY='D'; M= 10, -40, 36, -16, -43, -29, -24, -41, 2, -42, -34, 28, -6, 35, 12, 24, 26, -36, -48, -4; /M: SY='D'; M= 26, -42, 69, 0, -50, 9, -26, -47, 18, -47, -41, 16, -35, -21, -25, 4, -23, -41, -55, -39; /M: SY='P'; M= 18, -45, 9, 9, -48, -32, -30, -41, 24, -43, -1, -25, 68, 4, -5, 12, -7, -37, -47, -40; /M: SY='Q'; M= 20, -40, 10, 5, -38, -17, -29, 12, -10, -25, 36, 5, -35, 45, -27, -20, 21, 4, -48, -32; /M: SY='A'; M= 63, -35, -10, -27, -45, 6, -35, -35, -12, -39, -32, -7, 24, -26, -7, 6, -22, -11, -46, -40; /M: SY='K'; M= -18, -46, -27, -15, -43, -38, 42, -10, 52, -35, -27, 2, -6, 52, 15, -10, -26, 5, -46, -29; /M: SY='A'; M= 67, -33, -32, -26, -44, -5, -35, -37, 16, -39, -32, -25, -34, -23, -9, 21, -3, -26, -45, -38; /M: SY='L'; M= -7, -39, 10, -15, 4, -46, 29, 4, -38, 48, 26, -36, -45, -33, -38, -34, -9, 19, -45, -22; /M: SY='G'; M= 10, -41, 21, -10, -12, 37, 11, -35, 27, -25, -32, 27, -37, -24, -24, -9, -26, 0, -47, -33; /I: I=-24; MI=0; MD=-77; IM=0; DM=-77; /M: SY='Y'; M= -40, -51, -39, -42, 13, -46, -5, -25, -34, -22, -18, -41, -52, -29, -31, -35, -34, -30, 5, 117; /I: I=-24; MD=-77; /M: SY='V'; M= -45, -58, -54, -49, -49, -64, -4, -7, 8, -38, -37, -9, -61, -45, 15, -49, -41, 40, -70, -48; D=-24; /I: I=-24; MI=-77; IM=-77; DM=-77; /M: SY='Q'; M= 6, -46, -20, 22, -49, -15, 62, -46, 10, -41, -29, 4, -34, 74, 0, -8, -14, -43, -48, -27; /M: SY='D'; M= -5, -48, 90, 23, -54, -32, 5, -52, -22, -50, -46, 8, -5, -3, -30, -23, -26, -47, -64, -38; /I: I=-10; MD=-33; /M: SY='A'; M= 42, -53, -54, -49, -56, -45, -54, -50, -50, -53, -48, -48, -56, -12, -54, -18, 13, -25, -61, -5; D=-10; /I: I=-10; MD=-33; /M: SY='T'; M= 24, -54, -50, -49, -64, -47, -55, -57, -18, -60, -54, -9, -55, -47, -51, 9, 29, -48, -72, -59; D=-10; /I: I=-10; MD=-33; /M: SY='K'; M= -15, -65, 17, -1, -70, -56, -49, -69, 35, -68, -60, -38, -55, -36, -13, -11, -23, -62, -71, -59; D=-10; /I: I=-10; MD=-33; /M: SY='A'; M= 26, -55, -60, -56, -57, -50, -63, -34, -56, -48, -46, -53, -61, -53, -60, 15, -38, 25, -73, -58; D=-10; /I: I=-10; MI=0; MD=-33; IM=0; DM=-33; /M: SY='A'; M= 15, -60, -55, -26, -65, -55, -59, -50, -29, -56, -6, -13, -62, -51, -57, -5, 0, -10, -76, -62; D=-10; /I: I=-10; MI=0; MD=-33; IM=0; DM=-33; /M: SY='P'; M= -20, -80, -25, -20, -81, -8, -64, -74, -33, -78, -68, -59, 63, -57, -64, -54, -56, -72, -76, -76; D=-10; /I: I=-10; DM=-33; /M: SY='S'; M= -4, -41, -32, -26, -40, -34, 5, -37, 21, -1, -30, -23, -39, 9, 28, 44, 17, -34, -50, -34; D=-10; /I: I=-10; DM=-33; /M: SY='P'; M= -18, -55, -38, -32, 18, -41, 46, -37, -35, -38, -31, -38, 85, -34, -39, -34, -32, -41, -28, 59; D=-10; /I: I=-10; DM=-33; /M: SY='Q'; M= -10, -48, 4, 8, -48, -14, -27, -40, 42, -25, -4, 9, 17, 53, 1, -24, -14, -25, -47, -37; D=-10; /I: I=-10; DM=-33; /M: SY='D'; M= 19, -42, 40, 37, -48, 8, -28, -43, 5, -44, -39, 4, 14, -19, -27, 20, -7, -23, -51, -40; /M: SY='G'; M= -9, -44, -8, 15, -50, 72, 7, -54, -2, -51, -41, 4, -34, -25, -33, 9, -30, -48, -46, -41; /M: SY='Q'; M= -29, -49, 9, 5, -53, -34, 11, -46, 43, -43, -31, 18, -34, 86, -7, -8, -27, -46, -45, -31; /M: SY='H'; M= -18, -42, -11, -21, 9, -36, 51, -17, 27, -10, -26, 19, -37, 35, 17, 7, 20, -32, -45, -23; /M: SY='C'; M= -59, 284, -99, -99, -80, -91, -99, -94, -91, -75, -75, -72,-121,-106,-104, -65, -59, -69,-140,-101; /M: SY='S'; M= 33, -37, 8, 5, -42, 23, 11, -19, -28, -26, -32, -20, -34, 0, -33, 41, 0, -14, -49, -35; /M: SY='N'; M= -17, -37, 23, -24, -43, 12, -21, -37, -7, -44, -36, 78, -37, -23, -28, 3, 30, -10, -59, -39; /M: SY='C'; M= -59, 284, -99, -99, -80, -91, -99, -94, -91, -75, -75, -72,-121,-106,-104, -65, -59, -69,-140,-101; /M: SY='Q'; M= 32, -39, -34, -24, -37, -9, -29, -26, -20, 4, 18, -27, -38, 48, 28, 5, 4, -2, -45, -32; /M: SY='F'; M= -21, -40, -40, -34, 61, -44, -28, -15, -34, 41, -12, 17, -48, 37, -34, -34, -31, -21, -27, 10; /M: SY='Y'; M= -41, -46, -50, -47, 72, -48, -24, 4, -40, -14, 28, -45, -51, -40, -38, -40, -36, -23, 76, 79; /M: SY='Q'; M= 0, -45, -27, 8, -41, -14, -26, 15, 3, -16, -22, -4, -36, 76, -3, -21, 0, 2, -44, -31; /M: SY='P'; M= 34, -43, 3, -6, -49, 45, -36, -42, -8, -45, -36, -26, 55, 0, -35, -19, -28, -20, -46, -43; /I: I=-13; MD=-42; /M: SY='P'; M= 3, -50, 26, 23, -53, 9, 7, -50, 31, -50, -41, -8, 51, -22, -24, -26, -14, -46, -52, -43; D=-13; /I: I=-13; MD=-42; /M: SY='S'; M= 24, -42, 3, 6, -48, -17, 0, -37, -3, -43, -38, -26, -11, -27, -34, 41, -7, 2, -56, -41; D=-13; /I: I=-13; MD=-42; /M: SY='G'; M= 3, -57, -43, -5, -65, 26, -49, -62, -44, -62, -54, -37, -51, 9, -49, 19, 3, -54, -65, -57; D=-13; /I: I=-13; MI=0; MD=-42; IM=0; DM=-42; /M: SY='D'; M= -3, -58, 42, -15, -66, 12, -45, -63, -15, -63, -57, -31, -14, -13, -45, 4, -12, -57, -69, -56; D=-13; /I: I=-13; DM=-42; /M: SY='D'; M= 35, -51, 36, 24, -60, 10, -40, -55, -16, -54, -49, -30, -14, -31, -40, -28, -36, -46, -60, -51; D=-13; /I: I=-13; DM=-42; /M: SY='W'; M= 9, 11, -21, -44, -31, -43, 1, -46, -43, -46, -44, -44, -51, -15, -46, 2, -7, -30, 115, 16; D=-13; /I: I=-13; DM=-42; /M: SY='G'; M= -18, -53, -39, -41, -58, 67, -43, -63, 10, -59, -48, -27, -45, -7, 1, -11, -41, -57, -51, -50; D=-13; /I: I=-13; DM=-42; /M: SY='G'; M= -12, 8, -29, 2, -42, 44, -33, -41, -26, -43, -36, -23, 43, -27, 4, 22, 23, -20, -45, -5; /M: SY='C'; M= -59, 284, -99, -99, -80, -91, -99, -94, -91, -75, -75, -72,-121,-106,-104, -65, -59, -69,-140,-101; /M: SY='K'; M= 5, -41, -28, -19, -45, -8, -30, -20, 42, -40, -31, -20, 28, 39, 0, 11, 36, -32, -46, -35; /M: SY='V'; M= 2, -38, -46, -41, -20, -47, 27, 32, -40, 36, 27, -40, -44, -37, -41, -33, 2, 41, -47, -25; /I: I=-22; MI=0; MD=-71; IM=0; DM=-71; /M: SY='F'; M= -36, -40, -54, -50, 85, -53, -40, 26, -46, -8, -15, -45, -51, -52, -45, -40, -30, 36, -20, 19; /I: I=-21; MI=0; MD=-65; IM=0; DM=-65; /M: SY='P'; M= 30, -46, 10, 33, -51, 19, -34, -45, -27, -47, -38, -29, 74, -24, -36, -22, -27, -40, -48, -45; /M: SY='G'; M= -19, -44, 4, -35, -48, 79, -37, -46, -14, -48, -40, -19, -37, -5, -39, 3, -31, -9, -45, -43; /I: I=-21; MD=-65; /M: SY='K'; M= -49, -62, -8, -29, -57, -53, -40, -62, 61, -62, -51, 5, -7, -28, 0, -41, -42, -60, -56, -6; D=-21; /I: I=-21; MI=0; MD=-65; IM=0; DM=-65; /M: SY='Q'; M= 7, -45, -39, -3, -33, -43, -37, -23, -34, 34, -19, -38, 31, 36, -37, -14, 5, -12, -49, -36; D=-21; /I: I=-21; DM=-65; /M: SY='V'; M= -24, -38, -52, -47, -21, -55, -54, 52, -44, -6, -9, -46, -46, -45, -47, -37, -21, 74, -52, -29; /M: SY='S'; M= 34, -34, -23, -9, -39, -21, -26, -37, -6, -41, -34, 39, -35, -20, -28, 59, -12, -19, -46, 2; /M: SY='P'; M= 47, -41, -32, 4, -45, 6, -36, -34, -28, -25, -32, -12, 68, -28, -13, -20, -25, -11, -46, -42; /M: SY='N'; M= 4, -40, 40, 20, -47, -7, -22, -46, 21, -47, -39, 61, -35, -17, -5, 6, 3, -41, -55, -39; /M: SY='G'; M= -3, -44, -33, -44, -51, 89, -39, -58, -38, -54, -43, -19, -37, -35, -45, -17, -36, -51, -42, -46; /M: SY='W'; M= -43, -66, -65, -48, -5, -43, -52, -39, -40, -36, -37, -60, -48, -38, -42, -48, -52, -51, 160, 52; /M: SY='C'; M= -59, 284, -99, -99, -80, -91, -99, -94, -91, -75, -75, -72,-121,-106,-104, -65, -59, -69,-140,-101; /M: SY='S'; M= 11, -39, 12, -8, -37, -29, -28, -4, -21, -18, 0, 28, -37, 1, 21, 40, 5, -15, 29, -32; /M: SY='A'; M= 51, -33, -36, -32, -33, -25, -36, -7, -33, 11, -22, -29, -38, -28, -36, 43, -17, 11, -46, -34; /M: SY='W'; M= -43, -54, -56, -48, 60, -46, -34, -29, -40, -24, -28, -51, -51, -41, -40, -43, -43, -37, 132, 71; /M: SY='A'; M= 45, -33, -31, 1, -35, -29, -37, -2, -30, -15, -24, 0, -36, -28, -35, 17, 26, 29, -50, -35; /M: SY='P'; M= 16, -45, -7, -20, -43, -16, 11, -35, 48, -10, -29, -6, 59, -1, -17, -25, -26, -15, -46, -36; /M: SY='K'; M= 6, -44, -29, -17, -43, -4, -26, -39, 66, -36, 38, -21, -35, 21, 35, -24, -27, -36, -42, -32; /M: SY='A'; M= 43, -44, -37, -15, -54, 5, -42, -48, 0, -50, -43, -8, 7, -32, -37, 20, -7, -39, -55, -48; /M: SY='A'; M= -4, -96, -9, -80,-107, -13, -91,-102, -88,-102, -96, -77, -93, -86, -95, -73, -83, -92,-106, -99; /I: E1=0; IE=-255; DE=-255;» more |
Numerical results [info]
| Total number of hits | 24 in 24 different sequences |
| Number of true positive hits | 24 in 24 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 0 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
| Matrix type [info] | protein_domain |
| Scaling database [info] | window20 |
| Author [info] | PS_Langendijk_Genevaux |
| Taxonomic range [info] | Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 5 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
24 sequences
HIP1_ECTMO (P83341 ), HIP1_ECTSH (P38941 ), HIP1_HALHA (P04168 ), HIP1_RHOTE (P00266 ), HIP2_ECTMO (P83342 ), HIP2_ECTSH (P38524 ), HIP2_HALHA (P04169 ), HIP2_RHOTE (P33678 ), HIP_ALLVD (P00260 ), HIP_ALLWA (B3EBZ3 ), HIP_HALH2 (P00264 ), HIP_HALSE (B3EBZ6 ), HIP_ISOBU (B3EBZ5 ), HIP_MARGR (P00262 ), HIP_MARPU (P59860 ), HIP_RALSO (Q8XUU7 ), HIP_RHOFE (P80882 ), HIP_RHOGL (P38589 ), HIP_RUBGE (P00265 ), HIP_THETI (P80176 ), HIP_THIPF (P00263 ), HIP_THIRO (P00261 ), HIP_THIVI (B3EBZ4 ), IRO_ACIFR (P50500 )» more
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| PDB [Detailed view] |
26 PDB
1B0Y; 1CKU; 1EYT; 1HIP; 1HLQ; 1HPI; 1HRQ; 1HRR; 1ISU; 1IUA; 1JS2; 1NEH; 1NOE; 1PIH; 1PIJ; 2AMS; 2FLA; 2HIP; 3A38; 3A39; 3HIP; 5D8V; 5WQQ; 5WQR; 6AIQ; 6AIR » more |
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