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PROSITE entry PS51668


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General information about the entry

Entry name [info] TSAA_2
Accession [info] PS51668
Entry type [info] MATRIX
Date [info] 01-FEB-2013 CREATED;
01-FEB-2013 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC01022
Associated ProRule [info] PRU01003

Name and characterization of the entry

Description [info] TsaA-like domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=135;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=130;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.4114635; R2=0.0096837; TEXT='NScore';
/CUT_OFF: LEVEL=0; SCORE=887; N_SCORE=11.0; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=423; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-41; D=-150; I=-150; B1=-1000; E1=-1000; MI=-380; MD=-380; IM=-380; DM=-380;
...
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_06 which contains 572'619 sequence entries.


Total number of hits 17 in 17 different sequences
Number of true positive hits 17 in 17 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Feature key [info] DOMAIN
Feature description [info] TsaA-like
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
17 sequences

RCSF1_PSEAE (Q9RPT0), RCSF2_PSEAI (O68638), TRMO_ECOLI  (P28634), 
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PDB
[Detailed view]
6 PDB

1XQB; 2NV4; 3OKX; 7BTU; 7BTZ; 7BU1