PROSITE entry PS51782
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General information about the entry
| Entry name [info] | LYSM |
| Accession [info] | PS51782 |
| Entry type [info] | MATRIX |
| Date [info] |
01-NOV-2015 CREATED;
01-NOV-2015 DATA UPDATE; 13-SEP-2023 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC51782 |
| Associated ProRule [info] | PRU01118 |
Name and characterization of the entry
| Description [info] | LysM domain profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=45; /DISJOINT: DEFINITION=PROTECT; N1=1; N2=45; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.9349295; R2=0.0070080; TEXT='-LogE'; /CUT_OFF: LEVEL=0; SCORE=937; N_SCORE=8.5; MODE=1; TEXT='R'; /CUT_OFF: LEVEL=-1; SCORE=652; N_SCORE=6.5; MODE=1; TEXT='RR'; /DEFAULT: M0=-25; D=-150; I=-150; B1=-1000; E1=-1000; MI=-380; MD=-380; IM=-380; DM=-380; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=0; BI=-380; BD=-380; /M: SY='M'; M=-41,-72,-24,-21, 5,-53, 14, 4, 30, 6, 35,-17,-36, 22,-16, 35, 7, 0,-73,-11; /M: SY='W'; M=-16,-71,-33, 10, 22,-69,-19, 0, -2,-60,-59,-57,-24,-24,-26, 19, 62,-18, 72, 31; /M: SY='Y'; M=-68,-16,-65,-40,-36,-77, 95, 6,-37,-54,-50,-61,-77,-57,-33,-64,-64, 8,-49,104; /M: SY='T'; M=-57,-69,-20,-11,-65,-49,-20, 14, 23,-14,-54, 10,-10,-58,-21,-18, 72, 27,-83,-64; /M: SY='V'; M=-10,-67,-82,-76,-19,-82,-82, 30,-74, 1,-41,-77,-78,-75,-76,-65,-31, 89,-82,-59; /M: SY='Q'; M= -5,-12,-58, -5,-72,-20,-58,-63, 57,-67,-16,-37,-67, 62, 11, 11, 4, 13,-74, -5; /M: SY='P'; M= 11,-74, -9, 8,-34,-25,-59,-70, 41,-47,-17, -3, 42, 25, -4, 34, 0,-50,-75,-10; /M: SY='G'; M=-26,-76, 0, 1,-81, 88,-65,-54,-17,-51,-71,-11,-67, 5,-34,-33,-64,-78,-76,-74; /M: SY='D'; M=-64,-80,105, 43,-83,-44,-53,-84,-52,-82,-79,-11,-65,-22,-60,-12,-57,-80,-93,-20; /I: I=-38; MI=0; MD=-97; IM=0; DM=-97; /M: SY='T'; M=-49,-63,-55,-59,-44,-41,-62,-40,-57,-68,-63, 18,-62,-29,-63, 68, 87,-57,-83,-31; /M: SY='C'; M=-39, 83,-83,-77,-15,-83,-72, 12,-77, 68, -1,-77,-83,-73,-76,-71,-38, 12,-75,-26; /M: SY='W'; M=-29,-76, -8,-10, 12,-13,-60,-67,-59,-67,-15, 22,-70, 31,-63, 39, 20,-47,110, 42; /M: SY='S'; M= 27,-69, -2,-13,-35, 12,-61,-11, -2,-28,-62,-30,-67,-12, 8, 60, 1,-39,-76,-12; /M: SY='I'; M=-65,-75,-86,-82, 14,-88,-80, 91,-78, 31, 0,-78,-77,-75,-80,-74,-59, 11,-71,-52; /M: SY='A'; M= 80,-12,-67,-61,-71,-22,-68,-60,-63,-14,-59,-60,-31,-59,-67, 41,-49, -6,-77,-69; /M: SY='D'; M= 10,-74, 32, 16,-71,-32,-32,-24, 29,-11,-22, 24,-68, 22, 31, -2,-12,-20,-15,-40; /M: SY='Q'; M=-24,-76,-14, 0,-76,-66, -7,-54, 57,-36,-16, 11,-66, 63, 40, 17, -2,-70,-77,-64; /I: I=-36; MI=0; MD=-90; IM=0; DM=-90; /M: SY='Y'; M=-28, -7,-69,-68, 63,-73, 44,-19,-20,-36,-53,-15,-42, -8,-63, -4,-33,-60, 20, 95; /M: SY='G'; M=-21,-15, -7, -9,-51, 78, 31,-84, 16,-81,-71, 35,-33,-35,-43,-34,-62,-79,-78,-70; /M: SY='I'; M=-17, 10,-38,-23,-55,-18,-74, 55,-69, 6, -6,-43,-72,-68,-73, -5, 28, 48,-78,-16; /M: SY='T'; M=-15,-69, 12,-20,-19, 1,-62,-68, 5,-29,-64,-13, 33,-21,-37, 49, 60,-63,-80,-66; /M: SY='V'; M= -9,-68,-35,-44, -8,-53,-69, 14,-16, 16, 50,-33,-23,-65,-68, -3, 30, 51,-77,-21; /M: SY='D'; M= 23, -1, 50, 4,-74,-18,-20,-71,-10,-32, 0, 35,-67, 33,-11, 27, 2,-67,-82,-30; /I: I=-36; MI=0; MD=-90; IM=0; DM=-90; /M: SY='Q'; M= 9,-76, 56, 37,-78,-66,-26,-27, 26,-34,-64, 1,-65, 64,-18,-30, -9,-42,-81,-66; /M: SY='I'; M=-68,-72,-85,-80, 60,-87,-74, 66,-78, 56,-35,-78,-80,-76,-78,-74,-33,-25,-63,-44; /M: SY='K'; M= 14,-73,-67, -8,-57,-72,-63, 26, 34, 26, 27,-63,-71, 23, 4,-25, -2,-11, 22, 2; /M: SY='K'; M= 7,-74, -5, 20, -9,-50,-56,-74, 49,-53,-64, 1,-66, 44, 43, 20, 1,-69,-75,-63; /M: SY='W'; M= 23,-74,-53,-49,-28,-45,-72,-37,-48, 40, 6,-75,-76,-32,-30,-39,-29, 21,115, 17; /M: SY='N'; M=-42,-67,-38,-58,-74,-52,-45,-33,-50,-77,-66,121,-73,-52,-58,-46,-47, -8,-95,-71; /I: I=-25; MI=0; MD=-63; IM=0; DM=-63; /M: SY='N'; M= 8,-75,-11, -7,-79, 25, 31,-76, 28,-77,-66, 54, 40, 33,-19,-10,-24,-46,-81,-68; /M: SY='L'; M=-62,-72,-21,-15, -6, 10,-70, 45,-45, 52, 23,-12,-76,-67,-72,-67,-28, 12, 1,-56; /M: SY='N'; M=-18,-72, 25,-45,-33,-21,-23, 19, 35,-45,-14, 45,-14,-18,-13, 27, -7, 5,-79,-23; /M: SY='N'; M=-18,-71, 34, -7,-35, -9,-24,-33, -4,-42,-66, 62, -9,-14, -5, 49, 7,-52,-84,-66; /I: I=-33; MI=0; MD=-84; IM=0; DM=-84; /M: SY='C'; M=-16, 79, 14,-29,-22,-62,-79,-79,-55,-25,-19,-10, 59,-77,-83,-44, -5,-57,-96,-82; D=-33; /I: I=-33; DM=-84; /M: SY='N'; M=-24,-72, 33, 5,-27,-18, 13,-55,-15,-50,-65, 62,-19, 27,-23, 39, 5,-52,-79, 11; /M: SY='N'; M= -7,-32, 13,-16,-23,-27, 11,-61, 22, 1,-29, 66,-42,-12, -4, 8, -5, 1,-20,-63; /M: SY='I'; M=-41,-72,-84,-78, -8,-85,-77, 72,-77, 54,-35,-78,-21,-73,-78,-43,-59, 26,-73,-55; /M: SY='W'; M=-41,-77,-15, -2, 35,-45, 27,-26, 7,-27,-26,-11,-72, 48, -8,-16, -2,-17, 75, 56; /M: SY='P'; M= 42,-71,-69,-63,-32,-65,-70, 32,-41,-10,-19, 1, 64,-21,-70, -3,-18, 21,-78,-66; /M: SY='G'; M=-39,-75,-18,-44,-16, 91,-66,-83,-15,-39,-71, 16,-69,-63,-36,-34,-64,-79,-74,-71; /M: SY='Q'; M=-16,-78, 30, -5,-27,-68,-51,-42, 7,-67, -5,-51,-67, 99, -7,-33, 15,-69,-69, 30; /M: SY='K'; M= -2,-71,-39, 7,-66,-67,-61, -9, 40,-39,-58,-28,-11, 9, 13, 29, 38, 12,-75, 12; /M: SY='L'; M=-45,-73,-82,-78,-20,-84,-67, 59,-76, 61,-35,-78,-80,-71,-75,-48,-60, 7,-63, 51; /M: SY='C'; M=-35, 83, 4,-60,-60,-73,-65,-13, 36,-10,-56, -9,-75, 12,-29,-28, 0, 33, 41, 22; /M: SY='I'; M=-30, 21,-83,-78,-24,-83,-81, 70,-75, 13,-14,-76,-34,-74,-78,-41,-31, 60, 3,-58; /I: E1=0; IE=-380; DE=-380;» more |
Numerical results [info]
| Total number of hits | 284 in 186 different sequences |
| Number of true positive hits | 284 in 186 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 4 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 98.61 % |
Comments [info]
| Matrix type [info] | protein_domain |
| Scaling database [info] | reversed |
| Author [info] | CJA_Sigrist |
| Taxonomic range [info] | Bacteriophages, Eukaryotes, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 6 |
| Feature key [info] | DOMAIN |
| Feature description [info] | LysM |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
186 sequences
ACMA_LACLA (Q9CIT4), ACMA_LACLC (P0C2T5), ACMA_LACLM (A2RHZ5), ALYS_ENTFA (P37710), AMIB_HAEIN (P44493), CEBIP_ORYSJ (Q8H8C7), CERK1_ARATH (A8R7E6), CERK1_PHYPA (A9TXT1), CIH1_COLLN (Q9P403), CPLR_DESHA (Q8GFE2), CWLS_BACSU (O31852), DIPM_CAUVN (A0A0H3C9Q9), EAE_CITFR (Q07591), EAE_ECO11 (O31000), EAE_ECO27 (P19809), EAE_ECO57 (P43261), EBPS_STAA3 (Q2FGW1), EBPS_STAA8 (Q2FYF1), EBPS_STAAB (Q2YY76), EBPS_STAAC (Q5HFU2), EBPS_STAAE (A6QH29), EBPS_STAAM (Q99U09), EBPS_STAAN (Q7A5I6), EBPS_STAAR (Q6GGT1), EBPS_STAAS (Q6G983), EBPS_STAAU (Q53630), EBPS_STAAW (Q8NWM5), EBPS_STAEQ (Q5HP65), EBPS_STAES (Q8CP59), EBPS_STAHJ (Q4L6I5), EBPS_STAS1 (Q49XT4), ENLYS_BPB03 (Q37896), ENLYS_BPPH2 (P11187), ENLYS_BPPZA (P07540), ENP1_LYSSH (Q03415), ESTR_MYCTO (P9WM38), ESTR_MYCTU (P9WM39), EXSA_BACCE (Q6B4J5), FB60_ARATH (Q9FZ32), FIMV_PSEAB (A0A0H2ZC68), FIMV_PSEAE (Q9HZA6), KBP_ECOL6 (P0ADE7), KBP_ECOLI (P0ADE6), KTXA_KLULA (P09805), LDP_STAA8 (Q2G278), LPPB_HAEIN (P44833), LPPB_HISSO (P36685), LYK3_ARATH (F4IB81), LYK4_ARATH (O64825), LYK5_ARATH (O22808), LYM1_ARATH (Q93ZH0), LYM2_ARATH (O23006), LYM3_ARATH (Q6NPN4), LYP4_ORYSJ (Q67UE8), LYP6_ORYSJ (Q69T51), LYSM1_ARTBC (D4ALG0), LYSM1_BOVIN (A0JNI1), LYSM1_HUMAN (Q96S90), LYSM1_MACFA (Q9N012), LYSM1_MOUSE (Q9D0E3), LYSM1_RAT (Q5HZA4), LYSM1_XENLA (Q5PQ30), LYSM2_ARTBC (D4B4P8), LYSM2_BOVIN (Q1JQA8), LYSM2_DANRE (Q6DEF4), LYSM2_HUMAN (Q8IV50), LYSM2_MOUSE (Q9D7V2), LYSM2_XENLA (Q3KPL3), LYSM2_XENTR (Q3B7I8), LYSM3_ARTBC (D4AZ68), LYSM3_CHICK (Q5ZKK0), LYSM3_DANRE (Q6IQA2), LYSM3_HUMAN (Q7Z3D4), LYSM3_MOUSE (Q99LE3), LYSM3_RAT (Q5M836), LYSM3_XENTR (Q28DG6), LYSM4_ARTBC (D4B4Q2), LYSM4_DANRE (Q6P606), LYSM4_HUMAN (Q5XG99), LYSM4_MOUSE (Q8CC84), LYSM4_PONAB (Q5REP3), LYSM4_XENLA (Q6DCC7), LYSM5_ARTBC (D4AVW3), LYSM6_ARTBC (D4AY86), LYTE_BACSU (P54421), LYTF_BACSU (O07532), LYTN_STAA8 (Q9ZNI1), LYTN_STAAC (Q5HGI5), LYTN_STAAM (Q99UM3), LYTN_STAAN (Q7A5Y8), LYTN_STAAR (Q6GHI8), LYTN_STAAS (Q6G9W6), LYTN_STAAW (Q7A123), MEPM_ECOL6 (P0AFT0), MEPM_ECOLI (P0AFS9), MEPM_SHIFL (P0AFT1), MLTD_ECOL6 (P0AEZ8), MLTD_ECOLI (P0AEZ7), MUR2_ENTHA (P39046), NCOA7_CHICK (Q5ZMS4), NCOA7_HUMAN (Q8NI08), NCOA7_MOUSE (Q6DFV7), NLPD_BUCAI (P57493), NLPD_ECOLI (P0ADA3), NLPD_PSEAE (P45682), NLPD_SALDU (P39700), NLPD_SALTI (Q56131), NLPD_SALTY (P40827), NLPD_SHIFL (P0ADA4), OXR1_BOVIN (A5PKL1), OXR1_HUMAN (Q8N573), OXR1_MOUSE (Q4KMM3), OXR1_RAT(Q4V8B0), OXR1_XENLA (B4F6Q9), OXR1_XENTR (A8KBE0), P60_LISGR (Q01835), P60_LISIN (Q01836), P60_LISIV (Q01837), P60_LISMO (P21171), P60_LISSE (Q01838), P60_LISWE (Q01839), PGDA_ARTBC (D4B5F9), RPF_MICLU (O86308), SAFA_BACSU (O32062), SLE1_STAA3 (Q2FJH7), SLE1_STAA8 (Q2G0U9), SLE1_STAAB (Q2YVT4), SLE1_STAAC (Q5HIL2), SLE1_STAAN (Q7A7E0), SLE1_STAAR (Q6GJK9), SLE1_STAAS (Q6GC24), SLE1_STAAU (P0C1U7), SLE1_STAAW (Q7A1T4), SLE1_STAEQ (Q5HRU2), SLE1_STAES (Q8CMN2), SLE1_STAHJ (Q4L3C1), SLE1_STAS1 (Q49UX4), SLEL_BACAN (P0DPJ9), SLEL_BACCE (Q9K3E4), SLEL_BACSU (P37531), SP6D_BACSU (P37963), SPA_STAA8 (P02976), SPA_STAAE (A0A0H3K686), SPA_STAAM (P0A015), SPA_STAAN (P99134), SPA_STAAU (P38507), SSAAL_STAA8 (Q2G0D4), TAGH_ENTFA (Q831L8), TAGH_LACLA (Q9CH26), XKDP_BACSU (P54335), XLYA_BACSU (P39800), XLYB_BACSU (O34391), Y310_BUCAP (Q8K9M4), Y367_STRMU (Q8DVU8), Y593_CHLPN (Q9Z7W1), Y880_LISMO (Q8Y8L7), Y888_DEIRA (Q9RVY3), Y9443_DICDI (Q54HI1), YCFS_ECOLI (P75954), YDHD_BACSU (O05495), YEEJ_ECO57 (Q8X8V7), YEEJ_ECOLI (P76347), YGER_ECOLI (Q46798), YKUD_ALKCK (Q5WC42), YKUD_BACLD (Q65K99), YKUD_BACSU (O34816), YKVP_BACSU (O31681), YKZQ_BACSU (C0H403), YNEA_BACLD (Q65J41), YNEA_BACP2 (A8FDP8), YNEA_BACSU (Q45056), YNEA_BACVZ (A7Z553), YNEA_GEOKA (Q5L0C2), YNEA_GEOTN (A4IMK2), YNEA_LISIN (Q92C50), YNEA_LISMC (C1L2L0), YNEA_LISMF (Q720B8), YNEA_LISMH (B8DG24), YNEA_LISMO (Q8Y7H6), YNEA_LISW6 (A0AIA4), YNEA_PRIM3 (Q5ZNC8), YNHG_ECOLI (P76193), YOCH_BACSU (O34669), YPBE_BACSU (P50731), YQBP_BACSU (P45932), YQFZ_BACSU (P54483)» more
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| UniProtKB/Swiss-Prot False negative sequences |
4 sequences
CERK1_ORYSJ (A0A0P0XII1), LYK3_MEDTR (Q6UD73), NFP_MEDTR (Q0GXS4), RLK10_ORYSJ (D7UPN3)» more |
| PDB [Detailed view] |
21 PDB
1E0G; 1Y7M; 2DJP; 2MKX; 2MPW; 2MTZ; 3ZQD; 4A1I; 4A1J; 4A1K; 4A52; 4EBY; 4EBZ; 5JCD; 5JCE; 6XWE; 7AU7; 7PVC; 7VCM; 7VS7; 8I2E » more |