PROSITE entry PS51802
View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission
General information about the entry
| Entry name [info] | ZF_CCHHC |
| Accession [info] | PS51802 |
| Entry type [info] | MATRIX |
| Date [info] |
01-JUN-2016 CREATED;
01-JUN-2016 DATA UPDATE; 13-SEP-2023 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC51802 |
| Associated ProRule [info] | PRU01143 |
Name and characterization of the entry
| Description [info] | Zinc finger CCHHC-type profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=44; /DISJOINT: DEFINITION=PROTECT; N1=1; N2=44; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.8650764; R2=0.0074719; TEXT='-LogE'; /CUT_OFF: LEVEL=0; SCORE=1022; N_SCORE=9.5; MODE=1; TEXT='R'; /CUT_OFF: LEVEL=-1; SCORE=621; N_SCORE=6.5; MODE=1; TEXT='R?'; /DEFAULT: M0=-14; D=-150; I=-150; B1=-1000; E1=-1000; MI=-380; MD=-380; IM=-380; DM=-380; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=0; BI=-380; BD=-380; /M: SY='K'; M= 15,-51, -1, 18, -6,-18, 22,-36, 23,-14, 15, -5, 16, -1, 16, 7,-15,-25,-53,-22; /M: SY='E'; M= 13, 6, 15, 28,-49, -7,-40,-24, 8, -6, -6,-27, 26,-30, 15, 12,-14, -7,-58,-46; /M: SY='P'; M= 3,-52, 28, -5,-36, -8,-40, 0, -5,-13, 12, 5, 36, -3, 2, 12,-12, 3,-57,-20; /M: SY='H'; M= -1,-52, 3, 10,-14,-24, 32,-20, 26, -4, -3, 9, 17,-18, 8, -8, -4, -8,-11, 1; /M: SY='E'; M= -7,-50, -7, 28,-23,-22,-38,-25, 20,-32,-24, 7, 27, 4, -1, 22, 26, -7,-55,-16; /M: SY='E'; M= -1,-12, 20, 46,-26,-15,-38,-10, -3,-29,-41, 10, 11, 6,-18, 15, 2, -2,-59,-45; /M: SY='E'; M=-12,-52, 9, 23,-20, 3, 6, -4, -4, 18,-18, -3, 8, 3, 1,-26, 4, 4,-56,-40; /M: SY='W'; M= -1,-51,-42,-22, -3, 21,-41, 2,-10, 10, 25, 17, 16, -5, 6, 15,-26,-23, 28,-38; /M: SY='S'; M=-19,-16,-37, -8,-49, 2, 14,-28, 28,-47, -4,-19, 9, 18, 30, 33, 20,-16,-54, -6; /M: SY='C'; M=-25,142,-56,-55,-49,-53, -5,-55,-40,-47,-46,-43,-37,-58,-57,-25,-20,-44,-77,-57; /M: SY='P'; M=-19,-60,-23, -4,-57,-27,-44,-47,-35,-33,-44,-42,100,-38, 2, 12, 1,-29,-58,-54; /M: SY='T'; M=-25,-43,-43,-44,-16,-28,-48, 12,-40, 2, -9,-14,-19,-43,-24,-19, 79, 24,-59,-26; /M: SY='P'; M=-10,-60,-29, -5,-33,-22,-43,-36,-27,-11,-26,-29, 93,-19, -2, 3,-36,-31, 21,-11; /M: SY='G'; M=-21,-53,-12,-49,-19, 87,-21,-42,-35,-59,-50,-28,-46,-42,-28, 8,-42,-56,-52,-49; /M: SY='C'; M=-30,141,-56,-55,-49,-53,-56,-54,-50,-33,-45,-44,-32,-24,-28,-22,-38,-43,-75,-58; /M: SY='D'; M=-40,-53, 71,-23,-51,-43,-18,-30, 5,-24,-16, 29,-22, -8, 21, 6, 16,-25, 17,-31; /M: SY='G'; M=-10,-50,-39,-47,-57, 79,-45,-58,-43,-59,-50,-11,-45,-39,-49, 49,-33,-32,-55,-51; /M: SY='S'; M=-23, 1,-29,-28, -6,-45,-39, 15, 15, -3, 11,-24,-47, 33, 3, 44, 9, -6, -1, -7; /M: SY='G'; M=-19,-54,-19,-25,-59, 90, -5,-66,-45,-51,-51,-28,-25,-42,-52, -9,-44,-59,-53,-53; /M: SY='H'; M=-27,-55,-29,-33,-25,-44,125,-59,-33,-47,-15, 40,-48,-26,-12, -6,-39,-58,-73,-10; /M: SY='V'; M= 12,-46,-53,-49,-12,-50,-50, 38,-40, 19, 11,-32,-13,-45,-50, 15, -2, 44,-54,-21; /M: SY='T'; M=-33,-47,-16,-26,-48, -8,-37,-42, 37, -7,-24, 31,-44,-20, 11, 34, 49,-24,-59,-43; /M: SY='G'; M=-29,-53,-41,-38,-17, 77,-45,-32,-29,-55,-47, -8, -7,-40,-11, 20,-17,-34, 6,-18; /I: I=-33; MI=0; MD=-84; IM=0; DM=-84; /M: SY='N'; M=-19,-11,-35,-14, -9,-46,-19,-12, 45, 3,-16, 47,-49,-16, 35, -8, -9,-12,-54,-22; /M: SY='Y'; M=-30,-54, -3,-42, 52,-40, 39,-26, -8, 6,-29,-10,-56,-15, -4, -9,-31,-38,-26, 79; /M: SY='T'; M= 20,-47, 10, 19, 5,-26,-10,-40, -8,-15, -3, 7,-17, 3,-18, 25, 34,-15,-56,-39; /M: SY='T'; M=-20,-47,-38,-38, 7, -3, 9,-25, -1,-28,-25, 13,-46,-18, 30, 37, 44, -7,-52, 4; /M: SY='H'; M=-45,-58,-15,-31,-13,-48,134,-61,-36,-46,-33,-21,-48, -8,-31,-11,-29,-60,-75,-16; /M: SY='R'; M=-18,-55, -1, -9, 26,-50, 37,-11,-11,-36,-36,-15,-51, -8, 67, -2, -6,-26,-45, 28; /M: SY='T'; M= -9, 8,-36,-10,-29,-41,-18,-21, -5,-21,-22, 5,-45,-29, 45, 47, 47,-38,-59,-41; /M: SY='L'; M= 8,-17,-49,-20,-17,-17,-21, 17,-43, 37, -2,-35, -8, 19,-27, -7,-19, 19,-49, 13; /I: I=-38; MD=-97; /M: SY='S'; M= 0,-49, 15, 27,-21,-19,-38,-45,-17,-15,-42,-15,-45, 12,-28, 58,-11,-15,-12,-12; D=-38; /I: I=-38; MI=0; MD=-97; IM=0; DM=-97; /M: SY='G'; M= 24, 15,-13, 10,-24, 56, 8,-40,-30,-43,-28, -2,-31,-23,-23, 8,-14,-22,-55,-31; /M: SY='C'; M=-39,137,-21,-33,-49,-43,-11,-52,-29,-27,-44,-19,-35,-28,-54,-32,-29,-30,-75,-55; /M: SY='P'; M=-29, 1,-44,-26,-40,-29,-47,-50,-31,-58,-47,-48,113, -3,-50,-30,-37,-35,-57,-57; /M: SY='Y'; M=-36,-53,-48,-42,-15,-54,-18, 19, 9, 25, 3,-27,-54,-11, 35, -7,-15,-13, -2, 66; /M: SY='Y'; M= 45,-20,-41, 3, 19,-27,-37,-31, -6,-12,-35,-28,-32,-35, -2, 15, 3,-22,-40, 46; /M: SY='H'; M= 11,-52, 25, -1,-14,-30, 70,-18,-15,-24,-12, 16, 9, 7, 1, -9, 19,-43, -5,-22; /M: SY='N'; M= -8,-52, 2, 6,-51,-41, 1,-16, 36,-29,-23, 53, -5, 19, 25, 11,-24,-30,-58,-26; /I: I=-38; MD=-97; /M: SY='N'; M= 2,-32,-25,-18,-32,-18, 10,-15,-16, -2, 21, 56, 9, -4, 9, 13, 3,-18,-60,-42; D=-38; /I: I=-38; MI=-97; MD=-97; IM=-97; DM=-97; /M: SY='W'; M=-32,-54,-27,-37,-39,-18, 1, -7, 22, 5, 33,-28, -6, 22, 3, 19, 11,-23, 79,-21; D=-38; /I: I=-38; DM=-97; /M: SY='K'; M= 7,-52,-21,-18,-36, -9, 1,-22, 39, -6, 24, 0, 15, 6, 20, 3,-20,-10,-55,-42; D=-38; /I: I=-38; DM=-97; /M: SY='K'; M= 2,-52, 15, 17,-23,-44, 0,-28, 31,-12,-39, 11,-10, 27, 26, 11, 0,-38, 10,-40; /M: SY='E'; M= 10,-53, 14, 44,-11, -7,-19,-21, -1,-15, -9,-36, 19, 1, -2, -1,-22, -1, 6,-14; /I: E1=0; IE=-380; DE=-380;» more |
Numerical results [info]
| Total number of hits | 69 in 21 different sequences |
| Number of true positive hits | 69 in 21 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 0 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
| Matrix type [info] | protein_domain |
| Scaling database [info] | reversed |
| Author [info] | CJA_Sigrist |
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 7 |
| Feature key [info] | ZN_FING |
| Feature description [info] | CCHHC-type |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
21 sequences
KAT7_HUMAN (O95251), KAT7_MOUSE (Q5SVQ0), KAT7_RAT(Q810T5), LMBL1_CHICK (E1C2V1), LMBL1_HUMAN (Q9Y468), LMBL1_MOUSE (A2A5N8), LMBL1_RAT (D3ZWK4), LMBL3_HUMAN (Q96JM7), LMBL3_MOUSE (Q8BLB7), LMBL4_HUMAN (Q8NA19), LMBL4_MOUSE (B1B1A0), MYT1L_HUMAN (Q9UL68), MYT1L_MOUSE (P97500), MYT1L_RAT (P70475), MYT1_HUMAN (Q01538), MYT1_MOUSE (Q8CFC2), MYT1_XENLA (P70047), ST18_HUMAN (O60284), ST18_MOUSE (Q80TY4), ST18_RAT(Q9QX27), ZTF11_CAEEL (O02274)» more
|
| PDB [Detailed view] |
5 PDB
1PXE; 2CS8; 2JX1; 2JYD; 2MF8 |