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Entry: PS51802

General information about the entry

Entry name [info] ZF_CCHHC
Accession [info] PS51802
Entry type [info] MATRIX
Date [info] 01-JUN-2016 CREATED;
01-JUN-2016 DATA UPDATE;
05-JUN-2019 INFO UPDATE.
PROSITE Doc. [info] PDOC51802
Associated ProRule [info] PRU01143

Name and characterization of the entry

Description [info] Zinc finger CCHHC-type profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=44;
/DISJOINT: DEFINITION=PROTECT; N1=1; N2=44;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.8650764; R2=0.0074719; TEXT='-LogE';
/CUT_OFF: LEVEL=0; SCORE=1022; N_SCORE=9.5; MODE=1; TEXT='R';
/CUT_OFF: LEVEL=-1; SCORE=621; N_SCORE=6.5; MODE=1; TEXT='R?';
/DEFAULT: M0=-14; D=-150; I=-150; B1=-1000; E1=-1000; MI=-380; MD=-380; IM=-380; DM=-380;
...
                A   C   D   E   F   G   H   I   K   L   M   N   P   Q   R   S   T   V   W   Y
/I:         B1=0; BI=-380; BD=-380;
/M: SY='K';  M= 15,-51, -1, 18, -6,-18, 22,-36, 23,-14, 15, -5, 16, -1, 16,  7,-15,-25,-53,-22;
/M: SY='E';  M= 13,  6, 15, 28,-49, -7,-40,-24,  8, -6, -6,-27, 26,-30, 15, 12,-14, -7,-58,-46;
/M: SY='P';  M=  3,-52, 28, -5,-36, -8,-40,  0, -5,-13, 12,  5, 36, -3,  2, 12,-12,  3,-57,-20;
/M: SY='H';  M= -1,-52,  3, 10,-14,-24, 32,-20, 26, -4, -3,  9, 17,-18,  8, -8, -4, -8,-11,  1;
/M: SY='E';  M= -7,-50, -7, 28,-23,-22,-38,-25, 20,-32,-24,  7, 27,  4, -1, 22, 26, -7,-55,-16;
/M: SY='E';  M= -1,-12, 20, 46,-26,-15,-38,-10, -3,-29,-41, 10, 11,  6,-18, 15,  2, -2,-59,-45;
/M: SY='E';  M=-12,-52,  9, 23,-20,  3,  6, -4, -4, 18,-18, -3,  8,  3,  1,-26,  4,  4,-56,-40;
/M: SY='W';  M= -1,-51,-42,-22, -3, 21,-41,  2,-10, 10, 25, 17, 16, -5,  6, 15,-26,-23, 28,-38;
/M: SY='S';  M=-19,-16,-37, -8,-49,  2, 14,-28, 28,-47, -4,-19,  9, 18, 30, 33, 20,-16,-54, -6;
/M: SY='C';  M=-25,142,-56,-55,-49,-53, -5,-55,-40,-47,-46,-43,-37,-58,-57,-25,-20,-44,-77,-57;
/M: SY='P';  M=-19,-60,-23, -4,-57,-27,-44,-47,-35,-33,-44,-42,100,-38,  2, 12,  1,-29,-58,-54;
/M: SY='T';  M=-25,-43,-43,-44,-16,-28,-48, 12,-40,  2, -9,-14,-19,-43,-24,-19, 79, 24,-59,-26;
/M: SY='P';  M=-10,-60,-29, -5,-33,-22,-43,-36,-27,-11,-26,-29, 93,-19, -2,  3,-36,-31, 21,-11;
/M: SY='G';  M=-21,-53,-12,-49,-19, 87,-21,-42,-35,-59,-50,-28,-46,-42,-28,  8,-42,-56,-52,-49;
/M: SY='C';  M=-30,141,-56,-55,-49,-53,-56,-54,-50,-33,-45,-44,-32,-24,-28,-22,-38,-43,-75,-58;
/M: SY='D';  M=-40,-53, 71,-23,-51,-43,-18,-30,  5,-24,-16, 29,-22, -8, 21,  6, 16,-25, 17,-31;
/M: SY='G';  M=-10,-50,-39,-47,-57, 79,-45,-58,-43,-59,-50,-11,-45,-39,-49, 49,-33,-32,-55,-51;
/M: SY='S';  M=-23,  1,-29,-28, -6,-45,-39, 15, 15, -3, 11,-24,-47, 33,  3, 44,  9, -6, -1, -7;
/M: SY='G';  M=-19,-54,-19,-25,-59, 90, -5,-66,-45,-51,-51,-28,-25,-42,-52, -9,-44,-59,-53,-53;
/M: SY='H';  M=-27,-55,-29,-33,-25,-44,125,-59,-33,-47,-15, 40,-48,-26,-12, -6,-39,-58,-73,-10;
/M: SY='V';  M= 12,-46,-53,-49,-12,-50,-50, 38,-40, 19, 11,-32,-13,-45,-50, 15, -2, 44,-54,-21;
/M: SY='T';  M=-33,-47,-16,-26,-48, -8,-37,-42, 37, -7,-24, 31,-44,-20, 11, 34, 49,-24,-59,-43;
/M: SY='G';  M=-29,-53,-41,-38,-17, 77,-45,-32,-29,-55,-47, -8, -7,-40,-11, 20,-17,-34,  6,-18;
/I:         I=-33; MI=0; MD=-84; IM=0; DM=-84;
/M: SY='N';  M=-19,-11,-35,-14, -9,-46,-19,-12, 45,  3,-16, 47,-49,-16, 35, -8, -9,-12,-54,-22;
/M: SY='Y';  M=-30,-54, -3,-42, 52,-40, 39,-26, -8,  6,-29,-10,-56,-15, -4, -9,-31,-38,-26, 79;
/M: SY='T';  M= 20,-47, 10, 19,  5,-26,-10,-40, -8,-15, -3,  7,-17,  3,-18, 25, 34,-15,-56,-39;
/M: SY='T';  M=-20,-47,-38,-38,  7, -3,  9,-25, -1,-28,-25, 13,-46,-18, 30, 37, 44, -7,-52,  4;
/M: SY='H';  M=-45,-58,-15,-31,-13,-48,134,-61,-36,-46,-33,-21,-48, -8,-31,-11,-29,-60,-75,-16;
/M: SY='R';  M=-18,-55, -1, -9, 26,-50, 37,-11,-11,-36,-36,-15,-51, -8, 67, -2, -6,-26,-45, 28;
/M: SY='T';  M= -9,  8,-36,-10,-29,-41,-18,-21, -5,-21,-22,  5,-45,-29, 45, 47, 47,-38,-59,-41;
/M: SY='L';  M=  8,-17,-49,-20,-17,-17,-21, 17,-43, 37, -2,-35, -8, 19,-27, -7,-19, 19,-49, 13;
/I:         I=-38; MD=-97;
/M: SY='S';  M=  0,-49, 15, 27,-21,-19,-38,-45,-17,-15,-42,-15,-45, 12,-28, 58,-11,-15,-12,-12; D=-38;
/I:         I=-38; MI=0; MD=-97; IM=0; DM=-97;
/M: SY='G';  M= 24, 15,-13, 10,-24, 56,  8,-40,-30,-43,-28, -2,-31,-23,-23,  8,-14,-22,-55,-31;
/M: SY='C';  M=-39,137,-21,-33,-49,-43,-11,-52,-29,-27,-44,-19,-35,-28,-54,-32,-29,-30,-75,-55;
/M: SY='P';  M=-29,  1,-44,-26,-40,-29,-47,-50,-31,-58,-47,-48,113, -3,-50,-30,-37,-35,-57,-57;
/M: SY='Y';  M=-36,-53,-48,-42,-15,-54,-18, 19,  9, 25,  3,-27,-54,-11, 35, -7,-15,-13, -2, 66;
/M: SY='Y';  M= 45,-20,-41,  3, 19,-27,-37,-31, -6,-12,-35,-28,-32,-35, -2, 15,  3,-22,-40, 46;
/M: SY='H';  M= 11,-52, 25, -1,-14,-30, 70,-18,-15,-24,-12, 16,  9,  7,  1, -9, 19,-43, -5,-22;
/M: SY='N';  M= -8,-52,  2,  6,-51,-41,  1,-16, 36,-29,-23, 53, -5, 19, 25, 11,-24,-30,-58,-26;
/I:         I=-38; MD=-97;
/M: SY='N';  M=  2,-32,-25,-18,-32,-18, 10,-15,-16, -2, 21, 56,  9, -4,  9, 13,  3,-18,-60,-42; D=-38;
/I:         I=-38; MI=-97; MD=-97; IM=-97; DM=-97;
/M: SY='W';  M=-32,-54,-27,-37,-39,-18,  1, -7, 22,  5, 33,-28, -6, 22,  3, 19, 11,-23, 79,-21; D=-38;
/I:         I=-38; DM=-97;
/M: SY='K';  M=  7,-52,-21,-18,-36, -9,  1,-22, 39, -6, 24,  0, 15,  6, 20,  3,-20,-10,-55,-42; D=-38;
/I:         I=-38; DM=-97;
/M: SY='K';  M=  2,-52, 15, 17,-23,-44,  0,-28, 31,-12,-39, 11,-10, 27, 26, 11,  0,-38, 10,-40;
/M: SY='E';  M= 10,-53, 14, 44,-11, -7,-19,-21, -1,-15, -9,-36, 19,  1, -2, -1,-22, -1,  6,-14;
/I:         E1=0; IE=-380; DE=-380;
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2019_05 which contains 560'292 sequence entries.


Total number of hits 67 in 20 different sequences
Number of true positive hits 67 in 20 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 7
Feature key [info] ZN_FING
Feature description [info] CCHHC-type
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
20 sequences

KAT7_HUMAN  (O95251    ), KAT7_MOUSE  (Q5SVQ0    ), KAT7_RAT    (Q810T5    ), 
LMBL1_CHICK (E1C2V1    ), LMBL1_HUMAN (Q9Y468    ), LMBL1_MOUSE (A2A5N8    ), 
LMBL1_RAT   (D3ZWK4    ), LMBL3_HUMAN (Q96JM7    ), LMBL3_MOUSE (Q8BLB7    ), 
LMBL4_HUMAN (Q8NA19    ), LMBL4_MOUSE (B1B1A0    ), MYT1L_HUMAN (Q9UL68    ), 
MYT1L_MOUSE (P97500    ), MYT1L_RAT   (P70475    ), MYT1_HUMAN  (Q01538    ), 
MYT1_MOUSE  (Q8CFC2    ), MYT1_XENLA  (P70047    ), ST18_HUMAN  (O60284    ), 
ST18_MOUSE  (Q80TY4    ), ST18_RAT    (Q9QX27    )
» more

PDB
[Detailed view]
5 PDB

1PXE; 2CS8; 2JX1; 2JYD; 2MF8

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