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Entry: PS51811

General information about the entry

Entry name [info] ZF_CCHC_HIVEP
Accession [info] PS51811
Entry type [info] MATRIX
Date [info] 01-SEP-2016 CREATED;
13-FEB-2019 DATA UPDATE;
13-NOV-2019 INFO UPDATE.
PROSITE Doc. [info] PDOC51811
Associated ProRule [info] PRU01154

Name and characterization of the entry

Description [info] Zinc finger CCHC HIVEP-type profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=31;
/DISJOINT: DEFINITION=PROTECT; N1=4; N2=28;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=3.2393653; R2=0.0753427; TEXT='-LogE';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=354.9797974; R2=0.2525252; PRIORITY=1; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=117; H_SCORE=385; N_SCORE=12.0; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=44; H_SCORE=366; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-29; D=-100; I=-100; B1=-1000; E1=-1000; MI=-255; MD=-255; IM=-255; DM=-255;
...
                A   C   D   E   F   G   H   I   K   L   M   N   P   Q   R   S   T   V   W   Y
/I:         B1=0; BI=-255; BD=-255;
/M: SY='P';  M=-50,-51,  4,  3,-51,  6,-50,-51, -6, -2,  1,  2,  6,  0, -1,-50,-50, -1,-51,-51;
/M: SY='E';  M=  3,-51,-50,  5, -1, -7,  1, -5,-50, -4,-50,  5, -1,  1,  3,  0,  2, -2,-51,-51;
/M: SY='M';  M=-50,-51,-51,-51, -1,-51,  1,  0,-50,  5,  7,  5,  3,-51,-51,  0, -3,  4,-52,-50;
/M: SY='Y';  M=-52,-53,-51,-51,  8,-52,  3,-50,-51,-48,-50,-52,-51,-51,-50,-51,-51,-50,-47, 13;
/M: SY='E';  M=-50,-50,-50,  9,  1,-51,-50, -3,-49, -4,-50,  0,-50,-50,-51,  1,  3,  4,-51,-50;
/M: SY='C';  M=-51, 16,-51,-49,-51,-52,-53,-51,-52,-50,-51,-50,-52,-51,-51,-51,-51,-51,-50,-53;
/M: SY='P';  M=-13,-51,-50,  7,-52,-50, -1,-51,  2,-51,-51,  3,  9, -1,-50, -6,  1,-51,-51,-51;
/M: SY='T';  M=  3,-51,-50,-51,-50,-51,-51,  4,-50,  2,  6,-50,-51, -3, -8,  3,  7,  1,-52,-50;
/M: SY='C';  M=-51, 16,-51,-49,-51,-52,-53,-51,-52,-50,-51,-50,-52,-51,-51,-51,-51,-51,-50,-53;
/M: SY='G';  M=  1,-51,  0,-50,-51,  7, -4,-51,  1,-51,-50,  5,-50,  2,  3, -1, -8,-51,-50,-51;
/M: SY='I';  M=  3,-51,-51,-51, -4,-50,-51,  7,-50,-50,-50,  5,-51,-50,-51, -1,  6,  3,  1,-51;
/M: SY='R';  M= -1,-51,-50,  0,-51,  2,-50, -4, -8,-51, -1,-50,  5,-49,  7,  4,  1, -6,-51,-51;
/M: SY='Y';  M=-52,  9,-52,-51,  8,-52,-51,-50,-51,-49,-51,-51,-52,-51,-50,-51,-51,-50,-48, 11;
/M: SY='R';  M=-50,-51,-50,-50,-50,-51,-51,-51,  7,-51,-50,  0,-50,-49,  9,  0,  2,-51,-51,-50;
/M: SY='S';  M=-50,-51,  4, -3,-51, -3,-51,-51,  6,-51,-50,  3,-50,  2, -1,  6,  1,-51,-51,-51;
/M: SY='W';  M=  5,-51,-51,-50,-50,-50,-51,  3, -3,  1,  0,-51, -2,-50,  6,-50,-50,  1, 11,-49;
/M: SY='E';  M=-50,-50,  9,  9,-53, -7,-50,-52,-49,-50,-51,-50,-50,-49,-51,-50,-51,-51,-51,-51;
/M: SY='N';  M=-50,-51,  3,  1,-51,  1,-51, -3,-50, -5,-50, 10,-51,-50,-51,  3,  3, -2,-52,-51;
/M: SY='Y';  M=-51,-51,-51,-51,  4,-51,-50,-49,-51,  7,-49,-51,-51,-51,-50,-51,-50,-49,  5, 10;
/M: SY='E';  M=-50,-50,  1,  9,-51,-51,-50, -4,  7, -4,-50,-50,-50,  3,-50,-50,-51,-51,-51,-51;
/M: SY='T';  M=  6,-51,-50,-50,-50,-51, -2, -2, -1,  0,-50,  2,-51, -3, -3,-50,  6,  1,-51,  4;
/M: SY='H';  M=-51,-53,-51,-50,-52,-51, 15,-51,-51,-51,-49,-50,-49,-50,-51,-50,-51,-52,-52,-50;
/M: SY='K';  M=-50,-51,-50,-49, -3,-51,  1,-51,  8,-51,  3,  5,-50,  4,  6,-50, -3,-51,-51,-50;
/M: SY='K';  M= -9,-51,-50,-50,-50, -1,  1,  1,  6, -1,  0, -1,-50,  3,  5,  3,-50,-50,-51,-50;
/M: SY='Y';  M=-51,  6,-51,-51,  5,-51,  6,-50,-51,  0,-50,  3,-51,-51,-50, -2,  5,-50,-49,  9;
/M: SY='Y';  M=-52,  4,-51, -2, -3,-52,  4, -3,-51, -1,-50,-52,-51,-50,-50,-51,-51,-50,-48, 13;
/M: SY='C';  M=-51, 15,-51,-49,-51,-52,-52,-51,-52,-50,-51,-50,-52,-51,-51,-51,  1,-51,  5,-53;
/M: SY='Q';  M=-50,-51,-50,-49,-51, -1,  2, -4,  6, -4,-50,  0,  3,  9,-49,  5,-50,-51,-51,-51;
/M: SY='G';  M=  3,-51,  2,  6,-52,  7,-51,-51,  0,-51,-50,-50,-50, -1,-50, -2,-50, -4,-50,-51;
/M: SY='N';  M=  3,-51,-50,-50,-50,-50,  2, -3,-50,  4,  3,  6,  3,-50,  2,  3, -5,-50,-52,-50;
/M: SY='Q';  M= -2,-51, -2, -4,-50, -2,  5,  2,-50,  1,-50, -1, -6,  7,  0,  4, -5, -3,-51,  2;
/I:         E1=0; IE=-255; DE=-255;
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Post-processing [info]

COMPETES_HIT_WITH PS50157; PS51810

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2019_10 which contains 561'356 sequence entries.


Total number of hits 4 in 4 different sequences
Number of true positive hits 4 in 4 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Feature key [info] ZN_FING
Feature description [info] CCHC HIVEP-type
Version [info] 3

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
4 sequences

ZEP1_HUMAN  (P15822    ), ZEP1_MOUSE  (Q03172    ), ZEP3_HUMAN  (Q5T1R4    ), 
ZEP3_MOUSE  (A2A884    )
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