PROSITE entry PS51811
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General information about the entry
| Entry name [info] | ZF_CCHC_HIVEP |
| Accession [info] | PS51811 |
| Entry type [info] | MATRIX |
| Date [info] |
01-SEP-2016 CREATED;
13-FEB-2019 DATA UPDATE; 08-NOV-2023 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC51811 |
| Associated ProRule [info] | PRU01154 |
Name and characterization of the entry
| Description [info] | Zinc finger CCHC HIVEP-type profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=31; /DISJOINT: DEFINITION=PROTECT; N1=4; N2=28; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=3.2393653; R2=0.0753427; TEXT='-LogE'; /NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=354.9797974; R2=0.2525252; PRIORITY=1; TEXT='Heuristic 5.0%'; /CUT_OFF: LEVEL=0; SCORE=117; H_SCORE=385; N_SCORE=12.0; MODE=1; TEXT='!'; /CUT_OFF: LEVEL=-1; SCORE=44; H_SCORE=366; N_SCORE=6.5; MODE=1; TEXT='?'; /DEFAULT: M0=-29; D=-100; I=-100; B1=-1000; E1=-1000; MI=-255; MD=-255; IM=-255; DM=-255; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=0; BI=-255; BD=-255; /M: SY='P'; M=-50,-51, 4, 3,-51, 6,-50,-51, -6, -2, 1, 2, 6, 0, -1,-50,-50, -1,-51,-51; /M: SY='E'; M= 3,-51,-50, 5, -1, -7, 1, -5,-50, -4,-50, 5, -1, 1, 3, 0, 2, -2,-51,-51; /M: SY='M'; M=-50,-51,-51,-51, -1,-51, 1, 0,-50, 5, 7, 5, 3,-51,-51, 0, -3, 4,-52,-50; /M: SY='Y'; M=-52,-53,-51,-51, 8,-52, 3,-50,-51,-48,-50,-52,-51,-51,-50,-51,-51,-50,-47, 13; /M: SY='E'; M=-50,-50,-50, 9, 1,-51,-50, -3,-49, -4,-50, 0,-50,-50,-51, 1, 3, 4,-51,-50; /M: SY='C'; M=-51, 16,-51,-49,-51,-52,-53,-51,-52,-50,-51,-50,-52,-51,-51,-51,-51,-51,-50,-53; /M: SY='P'; M=-13,-51,-50, 7,-52,-50, -1,-51, 2,-51,-51, 3, 9, -1,-50, -6, 1,-51,-51,-51; /M: SY='T'; M= 3,-51,-50,-51,-50,-51,-51, 4,-50, 2, 6,-50,-51, -3, -8, 3, 7, 1,-52,-50; /M: SY='C'; M=-51, 16,-51,-49,-51,-52,-53,-51,-52,-50,-51,-50,-52,-51,-51,-51,-51,-51,-50,-53; /M: SY='G'; M= 1,-51, 0,-50,-51, 7, -4,-51, 1,-51,-50, 5,-50, 2, 3, -1, -8,-51,-50,-51; /M: SY='I'; M= 3,-51,-51,-51, -4,-50,-51, 7,-50,-50,-50, 5,-51,-50,-51, -1, 6, 3, 1,-51; /M: SY='R'; M= -1,-51,-50, 0,-51, 2,-50, -4, -8,-51, -1,-50, 5,-49, 7, 4, 1, -6,-51,-51; /M: SY='Y'; M=-52, 9,-52,-51, 8,-52,-51,-50,-51,-49,-51,-51,-52,-51,-50,-51,-51,-50,-48, 11; /M: SY='R'; M=-50,-51,-50,-50,-50,-51,-51,-51, 7,-51,-50, 0,-50,-49, 9, 0, 2,-51,-51,-50; /M: SY='S'; M=-50,-51, 4, -3,-51, -3,-51,-51, 6,-51,-50, 3,-50, 2, -1, 6, 1,-51,-51,-51; /M: SY='W'; M= 5,-51,-51,-50,-50,-50,-51, 3, -3, 1, 0,-51, -2,-50, 6,-50,-50, 1, 11,-49; /M: SY='E'; M=-50,-50, 9, 9,-53, -7,-50,-52,-49,-50,-51,-50,-50,-49,-51,-50,-51,-51,-51,-51; /M: SY='N'; M=-50,-51, 3, 1,-51, 1,-51, -3,-50, -5,-50, 10,-51,-50,-51, 3, 3, -2,-52,-51; /M: SY='Y'; M=-51,-51,-51,-51, 4,-51,-50,-49,-51, 7,-49,-51,-51,-51,-50,-51,-50,-49, 5, 10; /M: SY='E'; M=-50,-50, 1, 9,-51,-51,-50, -4, 7, -4,-50,-50,-50, 3,-50,-50,-51,-51,-51,-51; /M: SY='T'; M= 6,-51,-50,-50,-50,-51, -2, -2, -1, 0,-50, 2,-51, -3, -3,-50, 6, 1,-51, 4; /M: SY='H'; M=-51,-53,-51,-50,-52,-51, 15,-51,-51,-51,-49,-50,-49,-50,-51,-50,-51,-52,-52,-50; /M: SY='K'; M=-50,-51,-50,-49, -3,-51, 1,-51, 8,-51, 3, 5,-50, 4, 6,-50, -3,-51,-51,-50; /M: SY='K'; M= -9,-51,-50,-50,-50, -1, 1, 1, 6, -1, 0, -1,-50, 3, 5, 3,-50,-50,-51,-50; /M: SY='Y'; M=-51, 6,-51,-51, 5,-51, 6,-50,-51, 0,-50, 3,-51,-51,-50, -2, 5,-50,-49, 9; /M: SY='Y'; M=-52, 4,-51, -2, -3,-52, 4, -3,-51, -1,-50,-52,-51,-50,-50,-51,-51,-50,-48, 13; /M: SY='C'; M=-51, 15,-51,-49,-51,-52,-52,-51,-52,-50,-51,-50,-52,-51,-51,-51, 1,-51, 5,-53; /M: SY='Q'; M=-50,-51,-50,-49,-51, -1, 2, -4, 6, -4,-50, 0, 3, 9,-49, 5,-50,-51,-51,-51; /M: SY='G'; M= 3,-51, 2, 6,-52, 7,-51,-51, 0,-51,-50,-50,-50, -1,-50, -2,-50, -4,-50,-51; /M: SY='N'; M= 3,-51,-50,-50,-50,-50, 2, -3,-50, 4, 3, 6, 3,-50, 2, 3, -5,-50,-52,-50; /M: SY='Q'; M= -2,-51, -2, -4,-50, -2, 5, 2,-50, 1,-50, -1, -6, 7, 0, 4, -5, -3,-51, 2; /I: E1=0; IE=-255; DE=-255;» more |
Post-processing [info]
| COMPETES_HIT_WITH | PS50157; PS51810 |
Numerical results [info]
| Total number of hits | 4 in 4 different sequences |
| Number of true positive hits | 4 in 4 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 0 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
| Matrix type [info] | protein_domain |
| Scaling database [info] | reversed |
| Author [info] | CJA_Sigrist |
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 1 |
| Feature key [info] | ZN_FING |
| Feature description [info] | CCHC HIVEP-type |
| Version [info] | 3 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
4 sequences
ZEP1_HUMAN (P15822), ZEP1_MOUSE (Q03172), ZEP3_HUMAN (Q5T1R4), ZEP3_MOUSE (A2A884)» more
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