PROSITE entry PS51810
View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission
General information about the entry
| Entry name [info] | ZF_CCHC_FOG |
| Accession [info] | PS51810 |
| Entry type [info] | MATRIX |
| Date [info] |
01-SEP-2016 CREATED;
01-SEP-2016 DATA UPDATE; 08-NOV-2023 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC51810 |
| Associated ProRule [info] | PRU01153 |
Name and characterization of the entry
| Description [info] | Zinc finger CCHC FOG-type profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=34; /DISJOINT: DEFINITION=PROTECT; N1=4; N2=31; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.6549518; R2=0.0111699; TEXT='-LogE'; /CUT_OFF: LEVEL=0; SCORE=1553; N_SCORE=20.0; MODE=1; TEXT='R'; /CUT_OFF: LEVEL=-1; SCORE=345; N_SCORE=6.5; MODE=1; TEXT='R?'; /DEFAULT: M0=-68; D=-100; I=-100; B1=-1000; E1=-1000; MI=-255; MD=-255; IM=-255; DM=-255; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=0; BI=-255; BD=-255; /M: SY='P'; M= 2,-154, -3, -18, -2, -32, -61, -1, 13, -4, -24, -26, 42, 4, -47, 16, 4, 4,-156, -48; /M: SY='P'; M= -7,-155, -21, -14, -72, -11, -44, -39, -50, -30, -34, -8, 60, 8, 13, 15, 6, 27,-161, -92; /M: SY='P'; M= 15,-155, 18, -24, -61, -38, -35, -71, 30, 12, -52, 15, 42, 7, -11, 0, -18, -50,-158, -51; /M: SY='P'; M= 13,-101, -37, -32,-148, -14, 4, -58, -7, -10, 0, -40, 62, 43, -72, 7, 5, -11,-156, 0; /M: SY='D'; M= -26, -96, 57, -68, -41, 24, -46, -54, 8, -34, -13, 29, 11, 6, -91, 16, -8, -19,-160, -26; /M: SY='Y'; M= -25, -81, 26, -36,-142, 12, 17, -11, 10, -59, -68, -27, 9, 44, 4, -31, -58, 12,-150, 50; /M: SY='H'; M= -11, -88,-143,-139, 40,-150, 79, -83, 33, -14, -28, -21,-151,-134, 32, 10, 20, -87,-147, 33; /M: SY='Y'; M= -47,-156, -77, 26, 8, -62, 5, 12, 15, -39, 11,-142, 14, -84, -27, -53, 20, -53,-136, 85; /M: SY='C'; M=-141, 157,-161,-161,-152,-157,-161,-158, -76,-149,-149,-147,-171,-164,-162,-144, -78,-146,-181,-162; /M: SY='K'; M= 12, -20, -25, 28, 12, -76, -58, -89, 40, -40, -3, -56, 7, 21, 18, -9, 19, -17,-155, -85; /M: SY='E'; M= 42,-151, 27, 48, -74, -72, -7,-143,-109, -24, -25, -29, 26, -40,-143, 21, 8, -5,-161, -60; /M: SY='C'; M=-141, 158,-161,-161,-151,-157,-161,-157,-157, -89,-148,-147,-172,-164,-163,-144,-141,-145,-181,-161; /M: SY='D'; M=-139, -89, 69, -24, -67, 53, -18,-163, 28,-162,-153, 66,-148, -91, -11, -40,-137,-160,-164,-150; /M: SY='I'; M=-145,-158,-167,-165,-130,-171,-167, 111,-160, -92,-117,-158,-156,-157,-163,-154,-139, 5,-156,-138; /M: SY='W'; M= -56, -44,-142, -57,-151, -67, -27,-102, 26,-150,-144, -58, -96, 34, 50, 52, 35, 7, 60, -83; /M: SY='F'; M=-157,-155,-168,-164, 122,-164,-145,-132,-159,-124,-133,-158,-168,-167,-156,-155,-149,-137,-121, 46; /M: SY='N'; M= -56, 30,-133, -49,-111, -95, -3,-130, -62,-121, -21, 77,-151, -51, 15, 65, 21,-150,-163, 5; /M: SY='S'; M=-135,-152,-136, -87, -46,-121, -77,-155, 40,-121, -83, 48,-150, -84, 14, 80, -54,-151,-153, 41; /M: SY='H'; M= -12,-154,-151, 5, -36,-158, 52, 12, -79, 41, 31, -57, 3, -36,-108, -66, -42, 23,-154, 20; /M: SY='E'; M= -62,-156, 37, 62,-160,-145, -87,-157, 24,-158,-152, 41,-146, -86, 8, 46, -59, -33,-166,-151; /M: SY='N'; M= -46,-147, -49,-141,-154, -95,-136,-147,-135, -65,-146, 99,-149,-137,-143, 2, 77, -51,-173,-151; /M: SY='Y'; M=-153,-157,-161,-159, 67,-164,-135,-127,-155, 52,-123,-159,-167,-152,-152,-154,-147,-133,-124, 100; /M: SY='Q'; M= -89,-157, -67, -4, -87,-140, -94, 29, -17, 39, -12, -21,-155, 50, 25, -48, -6, -14,-152, 20; /M: SY='A'; M= 88, -66,-152,-145,-152, -61,-154, -37, -86,-141,-138,-146,-150,-145,-151,-127, 1, 37,-161,-151; /M: SY='H'; M=-151,-163,-135,-136,-150,-153, 153,-168,-140,-151,-136, -31,-152,-129,-134,-141,-149,-168,-185,-119; /M: SY='K'; M= -86,-160,-140,-126,-157, -79,-140, -83, 97, -14,-142,-134,-148, 59, -11,-139,-141, -54, -63,-146; /M: SY='Q'; M= -11,-155, -97, -42,-120,-150,-138,-146, 59, -35, 60, -27,-148, 67, 28, -55, 37,-144,-157,-144; /M: SY='Y'; M= -80,-159,-111,-151, 69,-157, 80,-139,-147, -26,-132, -8,-162, -99, -77, -67,-146,-101,-125, 104; /M: SY='Y'; M= -97,-109,-152,-154, -13,-158, -56,-139,-147,-135,-132,-152, -59, -91,-144, -38,-146,-143,-111, 136; /M: SY='C'; M=-142, 156,-162,-162,-153,-158,-162,-160,-158,-151,-151,-148,-173,-166,-165, -70, -95,-147,-183,-163; /M: SY='S'; M= 29, -72,-141,-105,-120, -68,-143, -90, -25, -76,-147, -18, 59, 12, -37, 76, -9,-110,-161,-151; /M: SY='S'; M= 32,-150,-140,-100,-156, 21, 40,-106, 33,-155,-147, -11,-110, -46, -93, 65, 8, -54,-162,-147; /M: SY='R'; M= -34,-160,-142, -64,-156, -25, 46,-109, 0, -97,-111, -55, -64, -43, 99, -25, 14,-154,-160, -95; /M: SY='H'; M= 10, -84, -78, -13, -63, -44, 73, -56, -20, -53, -35, 11, 41, 55, 16, -11, 1, -79, -15, -98; /I: E1=0; IE=-255; DE=-255;» more |
Post-processing [info]
| COMPETES_HIT_WITH | PS50157; PS51811 |
Numerical results [info]
| Total number of hits | 32 in 7 different sequences |
| Number of true positive hits | 32 in 7 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 0 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
| Matrix type [info] | protein_domain |
| Scaling database [info] | reversed |
| Author [info] | CJA_Sigrist |
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 5 |
| Feature key [info] | ZN_FING |
| Feature description [info] | CCHC FOG-type |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
7 sequences
FOG1_DANRE (P60622), FOG1_HUMAN (Q8IX07), FOG1_MOUSE (O35615), FOG1_XENLA (Q9I9K0), FOG2_HUMAN (Q8WW38), FOG2_MOUSE (Q8CCH7), USH_DROME (Q9VPQ6)» more
|
| PDB [Detailed view] |
5 PDB
1FU9; 1FV5; 1JN7; 1Y0J; 2L6Z |