PROSITE entry PS51879

View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
PURL: https://purl.expasy.org/prosite/signature/PS51879

Direct ScanProsite submission

General information about the entry

Entry name [info]	RST
Accession [info]	PS51879
Entry type [info]	MATRIX
Date [info]	13-FEB-2019 CREATED; 26-FEB-2020 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC51879
Associated ProRule [info]	PRU01227

Name and characterization of the entry

Description [info]

RST domain profile.

Matrix / Profile [info]

/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=72;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=67;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.6216993; R2=0.0081038; TEXT='-LogE';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=9288.8437500; R2=6.3417087; PRIORITY=1; TEXT='Heuristic 0.5%';
/CUT_OFF: LEVEL=0; SCORE=849; H_SCORE=14673; N_SCORE=9.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=479; H_SCORE=12327; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-73; D=-100; I=-100; B1=-1000; E1=-1000; MI=-255; MD=-255; IM=-255; DM=-255;

...

                A    C    D    E    F    G    H    I    K    L    M    N    P    Q    R    S    T    V    W    Y
/I:         B1=0; BI=-255; BD=-255;
/M: SY='R';  M= -57,-226, -50,  -2,-221, -35, -19, -35,  44, -19, -27,  -4,  17,   6,  54,   2,  -5,   4, -56,-215;
/M: SY='R';  M=  10, -85,-120, -69, -44,   9, -43, -10,  26, -43,  18,  19,  13, -15,  38, -11,  14, -11, -17,-214;
/M: SY='P';  M= -32,-101, -82, -55, -44, -61,  15, -63,   1, -58, -36,  22, 103, -85, -22,   1, -41, -45,-230,-128;
/M: SY='T';  M= -11, -51,-102, -96,-223,  -9, -36, -79,  41, -83, -45,   3,  29,  13,  20,  27,  51, -53,-228, -27;
/M: SY='S';  M= -38, -34, -97, -91,-131,   7, -14, -73, -53, -33,-111, -19,   1, -45, -19,  88,   0, -17,-232,-217;
/M: SY='P';  M=  -2,-229,-120, -48,-140, -60,-146, -81,  19, -77, -38, -47, 103, -74, -28,   1,   3, -13,-230,-224;
/M: SY='W';  M= -44,  -8,-225,-114, -38, -58, -20, -72,   3, -37,-130, -72, -21,  43,   6,  14, -63, -37, 143, -24;
/M: SY='M';  M= -30, -38, -20,-221, -35,-228,-215,  46,-108, -30, 104, -33, -71, -55, -50,-216, -71,  48,-223,  12;
/M: SY='P';  M= -50,-227, -55, -67, -68, -67, -31,-219, -28, -62,  13,-208,  96, -39, -25,  62,   0, -85,-230,-220;
/M: SY='F';  M= -94,-221,-235,-231, 115,-232,-218, -11,-227,  -6, -15,-226,-233, -82,-225, -44,-214,  -5, -35, -15;
/M: SY='P';  M=   6,  -2, -43, -19, -52,  -9,  21,-220, -48, -82, -72, -36,  86, -39,  -9,  37,  -6, -52, -75, -51;
/M: SY='M';  M=  10, -80,  -2, -24,-211,-220,-213, -37,  15,   5,  89, -15, -49, -35, -34, -34,  28,  25,-229,-211;
/M: SY='L';  M=-217, -80, -95,-225, -42,-235,-218, -85,-119,  95, -61, -91,-233,-220, -64,-226, -67, -65,-221,-203;
/M: SY='F';  M=-218,-222,-235,-229,  84,-234, -38,  53,-227,  46,  29,-227,-231, -83,-225, -57,-212, -30,-209, -73;
/M: SY='P';  M=  43, -51, -22, -43, -82, -46,-108,-220,  -9, -41,-133, -68,  63, -44,  11,  58, -31,-107, -65,-113;
/M: SY='A';  M=  52,-219, -94,   8, -71, -95, -35,  34,  15, -28,  19,-212,-218, -52, -21, -22,  11,  22,-227,-213;
/M: SY='I';  M=-215,-222,-233, -62, -95,-236,-224,  75,-226,  66,  27,-228,-228,-221,-227, -59, -92, -10,-223,-205;
/M: SY='S';  M= -51, -80,-209, -36, -89, -27,-209, -23,   6, -50, -41, -67, -61,  58,  19,  78, -66,  -6,-228,-214;
/M: SY='P';  M= -29,-226,  21, -24,-227, -52, -30,-120,  53,-124,-147,  50,  54, -82,  25,   7,   5,-112, -54, -74;
/M: SY='H';  M=-111, -23, -94, -32,  52,-143,  65, -13,  42, -32, -35,   7,-221,  48, -64,  25, -62, -48, -20,  -2;
/M: SY='L';  M=-115,-219, -95,-225, -94,-234, -61,  23,-225,  76,  -4, -60,-230, -45,-224,-152,-209,  50,-225,-205;
/M: SY='P';  M= -11,-228,  61, -69,-162, -61,   8,-224, -36,-203,-220, -17,  94, -73,-131,  37, -50, -69,-234,-222;
/M: SY='P';  M= -13, -96, -79, -35, -95, -75, -21, -91,  41, -76,-215,-207,  91,  -5,  16,  39, -39,-158,-227, -65;
/M: SY='D';  M=  -9, -83,  61,   0,-132, -56,   6, -90,  19, -44, -52,  -9,  22, -22, -46,  54, -32, -29,-234,-132;
/M: SY='K';  M=   2, -93,  48, -27,-227,-100, -42, -47,  63,-158, -57, -43,-217,  31,  57, -42,   3,-121,-228, -73;
/M: SY='M';  M=   9, -14,  -9, -66, -35, -33,-213,  23, -19, -33, 110,-214,-221,-210,  -2, -29, -52,  23, -88,-207;
/M: SY='M';  M=  -1, -14,  34,  30, -40, -64,   3, -24,   4, -30,  70,  21, -55,  43, -17, -37, -50, -49,-227, -36;
/M: SY='Q';  M= -37, -26,-121,  28, -49,-114, -10, -20,-207,  53,  19,-132,-221,  75, -93, -10, -14, -25,-223, -50;
/M: SY='I';  M=-132, -45,-234,-228,-100,-236,-225,  72,-106,  61,  12,-228,-228,-222, -98,-223,-120,  36,-224,-205;
/M: SY='Q';  M= -41, -92, -31,   5,  -2,-114,  30, -30, -28, -13, -17,  31,-218,  75,   8,  12,  22, -21, -24, -31;
/M: SY='T';  M=   1, -32, -32, -11,-220,  -8,  29, -25,  48, -54,   7,   7, -91, -11,  14,   7,  52, -97,-229,-110;
/M: SY='H';  M= -84,  -1,   1,-212,  -3,-120,  81,   6,-111,  42, -84,  -6,-224,  -9,-214,   9,   9, -77, -56,  52;
/M: SY='Y';  M=-121, -10,-219,-103,  37,-226,  56,-206,-214, -74, -49,-217, -96,-211, -64, -54, -92, -63,   4, 126;
/I:         I=-30; MD=-77;
/M: SY='E';  M=   0, -25,  33,  50,-135, -22, -55, -71,   8, -41, -69,  46, -91,  17,  -6,   8, -15, -39, -63, -28; D=-30;
/I:         I=-30; MI=-77; IM=-77; DM=-77;
/M: SY='D';  M= -42, -18,  55,  36, -99,-101,  -7, -46,  47,  -2, -86, -26,-216,  29,  10,  -5, -23, -49,-230,-132;
/M: SY='F';  M=-219, -55,-102, -65,  83,-132,  32,-148, -52,  50,  -1,-222,-231, -45, -43, -92,-111, -73,-201,  64;
/M: SY='K';  M= -75,-228,-209, -67,-224,-142,-107, -59,  84, -55,   3,-202,-133,  39,  77, -92,-102, -76,-223,-212;
/M: SY='E';  M=  18,-109, -17,  54, -91, -50,-128, -50,  50,-219, -14,  13,-214, -42,  30,  13, -37, -16,-228,-216;
/M: SY='N';  M= -88,  -1, -25, -68,-228,  37, -27,-230,  59,-110, -65,  76,-219, -52,  39, -28,-207,-227, -37,-218;
/M: SY='K';  M= -71,-228,-105,  59,-229,-181,-103, -98,  91,-225, -33, -45,-213,  17,  20,-146,-209, -81,-225,-217;
/M: SY='I';  M=-213,-225, -80,-135,-117,-104,-229,  97,-226,   1,  56,-225,-225,-223,-229,-222, -52,  22,-226,-207;
/M: SY='S';  M= -13, -52, -73,-117,-223, -37,  -9,-104, -15, -81,-215,   1,  24, -67, -38,  74,  64, -72, -61,-103;
/M: SY='R';  M= -63, -42,-211,-199,-227,-112,-206,-100,  76,-225, -29, -79,-221, -62,  96,-108, -98,-113, -38,-214;
/M: SY='E';  M= -39, -56,  72,  73, -86, -31,  23, -89, -90, -53, -63, -23, -22,   4, -59, -15,-112, -70,-236,-110;
/M: SY='Q';  M= -38,-107,  49,  62,-225, -16,  11, -29, -83,-110, -41, -39,-216,  62, -47, -27, -23,  -7,-230,  -7;
/M: SY='F';  M=-222, -51,-237,-231, 107,-118,-217,-130,-228,  40,  56,-229,-234,-230,-225,-225,-216, -97,   6, -68;
/M: SY='V';  M=-120, -41,-109,-101, -41,-144,-229,  68,-225,  12,  25,-226, -58,-224,-227, -73, -37,  70,-228, -60;
/M: SY='R';  M=-214, -82,-102,-108,-113,-134, -53, -61,  72,-109, -30, -40, -85,  56,  82, -46, -89,-132, -67,-214;
/M: SY='K';  M=-103, -60,-129, -43, -11, -74,  45, -90,  57,  -6, -11, -15,-104,  49,  43, -42, -16, -11,-225, -33;
/M: SY='M';  M= -46, -54,-235,-227, -26,-233,-221,  -7,-225,  61,  85,-229,-230,-221,-188,-222, -60,  46,  -8,-205;
/M: SY='R';  M=-217,-233,-215,-203,-225,-162,-205, -39,  14,-223, -36, -78,-225,-193, 114, -47,-120,-119,-226, -48;
/M: SY='Q';  M= -42, -32,  -5, -19, -52,  -7,   0, -25, -11,  13,  -2,  35,-221,  51, -41,  41, -21, -51,-230,-179;
/M: SY='I';  M= -85,-105,-234,-112, -72,-238, -40,  97,-146, -12, -91,-226,-226,-225,-230, -70, -31,  33,-226, -23;
/M: SY='V';  M=  40,-217,-229,-223,-153,-224, -61,   6,-222, -99,-198,-223,-226,-223,-225, -77,  -2,  89,-235,-215;
/M: SY='G';  M= -80, -82,-135,-114,-234, 106,-222,-242,-134,-237,-227,-202,-220,-218, -72,-120,-219,-235,-226,-229;
/M: SY='D';  M= -75,-232, 116,  20,-238,-121, -74,-236,-131,-152, -63,  -6,-218,-125, -73,-207,-209,-232,-250,-222;
/M: SY='Q';  M= -53,-230,  16,  26,-231, -80,  15,-107,  61,-116, -79,   1, -67,  72,  18, -57,  -6,-225,-230,-108;
/M: SY='M';  M= -63,-221,-233,-225, -48,-233,-219,  -1, -65,  66,  83,-228,-115, -65, -68, -56, -65,  27,-226,-206;
/M: SY='L';  M=-218, -32,-235,-228,-116,-237,-220, -19,-107,  92, -12,-233,-235, -93,-226, -74, -92,-103,-223,-206;
/M: SY='R';  M= -23,-226,-219,-101, -23,-197, -15,  19,  43,   6, -71, -96, -92,-204,  67, -43,   6,   2, -85, -45;
/M: SY='S';  M=  18, -69, -29,  -7,-103,-211,  -7, -71, -47,  -9,  16,-138, -83,  43, -34,  73,   7,-152, -27,-214;
/M: SY='T';  M=  61,-217,-220, -92,-216,-103,-225,  37,-117,-114, -69,-118, -91, -77,-222, -41,  62,  31,-232,-217;
/M: SY='I';  M=  15, -75,-232,-228, -63,-231, -82,  84,-226,  16,  -2, -80,-227, -76,-228, -73, -47,  24,-227, -93;
/M: SY='K';  M= -20,-101,-138, -61,-142,-130,  -4, -44,  66,-120,  37, -13,-112,  18,  22,  11,  40, -68,-227,  -6;
/M: SY='K';  M= -11,-225, -37,  18, -66, -54, -47,-225,  55, -52,-116,  11,-218,  47,  16,  43, -38, -86,-229, -79;
/M: SY='L';  M= -68,   2,-229, -72,  17,-134,  17,  31,-115,  55,  -1, -84,-104, -58,-101, -24,-212,  10, -81,  42;
/M: SY='Q';  M= -90, -28, -72, -90, -42, -40,  47,-110,  -4, -60, -72, -33, -35,  99,  59, -65, -39,-105,-228,-101;
/M: SY='Q';  M=  -3,  18,  -4, -38, -64,  23,  -6,-108, -33, -71,  38,  24, -56,  48, -10,  19, -26, -44,-226,  17;
/M: SY='Q';  M=-103,  34, -41, -42,-126, -77, -76, -74,  63, -48, -33, -26, -56,  82, -30,   7, -94, -86, -68,  -5;
/M: SY='P';  M=   0,-159, -49,  -6, -61, -26,  -9, -18,  -1,  -8,  16, -32,  36,  26, -20, -27, -16,   5,-235,-220;
/M: SY='Q';  M= -16,-115, -53,-105, -31, -46,   0, -33,  -6, -37, -47,   0,  32,  49, -16,  17, -27, -37,-106, -47;
/M: SY='P';  M= -25, -31,-225, -42, -66, -24, -14, -51, -19,  -6, -65, -10,  33,   7,   0,  22, -18, -38, -37, -59;
/I:         E1=0; IE=-255; DE=-255;

» more

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_03 which contains 573'661 sequence entries.

Total number of hits	8 in 8 different sequences
Number of true positive hits	8 in 8 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	0
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	100.00 %

Comments [info]

Taxonomic range [info]	Eukaryotes
Maximum number of repetitions [info]	1
Matrix type [info]	protein_domain
Scaling database [info]	reversed
Author [info]	CJA_Sigrist
Feature key [info]	DOMAIN
Feature description [info]	RST
Version [info]	2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

8 sequences

RCD1_ARATH  (Q8RY59), SRO1_ARATH  (O82289), SRO2_ARATH  (Q9ZUD9),

SRO3_ARATH  (O64592), SRO4_ARATH  (Q9STU1), SRO5_ARATH  (Q9FJJ3), 
TAF4B_ARATH (F4K4L7), TAF4_ARATH  (Q6SJR1)

» more

Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

PDB
[Detailed view]

3 PDB

5N9Q; 5OAO; 7AC1