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| Entry: PS51879 |
General information about the entry
| Entry name [info] | RST |
| Accession [info] | PS51879 |
| Entry type [info] | MATRIX |
| Date [info] |
13-FEB-2019 CREATED;
26-FEB-2020 DATA UPDATE; 10-FEB-2021 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC51879 |
| Associated ProRule [info] | PRU01227 |
Name and characterization of the entry
| Description [info] | RST domain profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=72; /DISJOINT: DEFINITION=PROTECT; N1=6; N2=67; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.6216993; R2=0.0081038; TEXT='-LogE'; /NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=9288.8437500; R2=6.3417087; PRIORITY=1; TEXT='Heuristic 0.5%'; /CUT_OFF: LEVEL=0; SCORE=849; H_SCORE=14673; N_SCORE=9.5; MODE=1; TEXT='!'; /CUT_OFF: LEVEL=-1; SCORE=479; H_SCORE=12327; N_SCORE=6.5; MODE=1; TEXT='?'; /DEFAULT: M0=-73; D=-100; I=-100; B1=-1000; E1=-1000; MI=-255; MD=-255; IM=-255; DM=-255; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=0; BI=-255; BD=-255; /M: SY='R'; M= -57,-226, -50, -2,-221, -35, -19, -35, 44, -19, -27, -4, 17, 6, 54, 2, -5, 4, -56,-215; /M: SY='R'; M= 10, -85,-120, -69, -44, 9, -43, -10, 26, -43, 18, 19, 13, -15, 38, -11, 14, -11, -17,-214; /M: SY='P'; M= -32,-101, -82, -55, -44, -61, 15, -63, 1, -58, -36, 22, 103, -85, -22, 1, -41, -45,-230,-128; /M: SY='T'; M= -11, -51,-102, -96,-223, -9, -36, -79, 41, -83, -45, 3, 29, 13, 20, 27, 51, -53,-228, -27; /M: SY='S'; M= -38, -34, -97, -91,-131, 7, -14, -73, -53, -33,-111, -19, 1, -45, -19, 88, 0, -17,-232,-217; /M: SY='P'; M= -2,-229,-120, -48,-140, -60,-146, -81, 19, -77, -38, -47, 103, -74, -28, 1, 3, -13,-230,-224; /M: SY='W'; M= -44, -8,-225,-114, -38, -58, -20, -72, 3, -37,-130, -72, -21, 43, 6, 14, -63, -37, 143, -24; /M: SY='M'; M= -30, -38, -20,-221, -35,-228,-215, 46,-108, -30, 104, -33, -71, -55, -50,-216, -71, 48,-223, 12; /M: SY='P'; M= -50,-227, -55, -67, -68, -67, -31,-219, -28, -62, 13,-208, 96, -39, -25, 62, 0, -85,-230,-220; /M: SY='F'; M= -94,-221,-235,-231, 115,-232,-218, -11,-227, -6, -15,-226,-233, -82,-225, -44,-214, -5, -35, -15; /M: SY='P'; M= 6, -2, -43, -19, -52, -9, 21,-220, -48, -82, -72, -36, 86, -39, -9, 37, -6, -52, -75, -51; /M: SY='M'; M= 10, -80, -2, -24,-211,-220,-213, -37, 15, 5, 89, -15, -49, -35, -34, -34, 28, 25,-229,-211; /M: SY='L'; M=-217, -80, -95,-225, -42,-235,-218, -85,-119, 95, -61, -91,-233,-220, -64,-226, -67, -65,-221,-203; /M: SY='F'; M=-218,-222,-235,-229, 84,-234, -38, 53,-227, 46, 29,-227,-231, -83,-225, -57,-212, -30,-209, -73; /M: SY='P'; M= 43, -51, -22, -43, -82, -46,-108,-220, -9, -41,-133, -68, 63, -44, 11, 58, -31,-107, -65,-113; /M: SY='A'; M= 52,-219, -94, 8, -71, -95, -35, 34, 15, -28, 19,-212,-218, -52, -21, -22, 11, 22,-227,-213; /M: SY='I'; M=-215,-222,-233, -62, -95,-236,-224, 75,-226, 66, 27,-228,-228,-221,-227, -59, -92, -10,-223,-205; /M: SY='S'; M= -51, -80,-209, -36, -89, -27,-209, -23, 6, -50, -41, -67, -61, 58, 19, 78, -66, -6,-228,-214; /M: SY='P'; M= -29,-226, 21, -24,-227, -52, -30,-120, 53,-124,-147, 50, 54, -82, 25, 7, 5,-112, -54, -74; /M: SY='H'; M=-111, -23, -94, -32, 52,-143, 65, -13, 42, -32, -35, 7,-221, 48, -64, 25, -62, -48, -20, -2; /M: SY='L'; M=-115,-219, -95,-225, -94,-234, -61, 23,-225, 76, -4, -60,-230, -45,-224,-152,-209, 50,-225,-205; /M: SY='P'; M= -11,-228, 61, -69,-162, -61, 8,-224, -36,-203,-220, -17, 94, -73,-131, 37, -50, -69,-234,-222; /M: SY='P'; M= -13, -96, -79, -35, -95, -75, -21, -91, 41, -76,-215,-207, 91, -5, 16, 39, -39,-158,-227, -65; /M: SY='D'; M= -9, -83, 61, 0,-132, -56, 6, -90, 19, -44, -52, -9, 22, -22, -46, 54, -32, -29,-234,-132; /M: SY='K'; M= 2, -93, 48, -27,-227,-100, -42, -47, 63,-158, -57, -43,-217, 31, 57, -42, 3,-121,-228, -73; /M: SY='M'; M= 9, -14, -9, -66, -35, -33,-213, 23, -19, -33, 110,-214,-221,-210, -2, -29, -52, 23, -88,-207; /M: SY='M'; M= -1, -14, 34, 30, -40, -64, 3, -24, 4, -30, 70, 21, -55, 43, -17, -37, -50, -49,-227, -36; /M: SY='Q'; M= -37, -26,-121, 28, -49,-114, -10, -20,-207, 53, 19,-132,-221, 75, -93, -10, -14, -25,-223, -50; /M: SY='I'; M=-132, -45,-234,-228,-100,-236,-225, 72,-106, 61, 12,-228,-228,-222, -98,-223,-120, 36,-224,-205; /M: SY='Q'; M= -41, -92, -31, 5, -2,-114, 30, -30, -28, -13, -17, 31,-218, 75, 8, 12, 22, -21, -24, -31; /M: SY='T'; M= 1, -32, -32, -11,-220, -8, 29, -25, 48, -54, 7, 7, -91, -11, 14, 7, 52, -97,-229,-110; /M: SY='H'; M= -84, -1, 1,-212, -3,-120, 81, 6,-111, 42, -84, -6,-224, -9,-214, 9, 9, -77, -56, 52; /M: SY='Y'; M=-121, -10,-219,-103, 37,-226, 56,-206,-214, -74, -49,-217, -96,-211, -64, -54, -92, -63, 4, 126; /I: I=-30; MD=-77; /M: SY='E'; M= 0, -25, 33, 50,-135, -22, -55, -71, 8, -41, -69, 46, -91, 17, -6, 8, -15, -39, -63, -28; D=-30; /I: I=-30; MI=-77; IM=-77; DM=-77; /M: SY='D'; M= -42, -18, 55, 36, -99,-101, -7, -46, 47, -2, -86, -26,-216, 29, 10, -5, -23, -49,-230,-132; /M: SY='F'; M=-219, -55,-102, -65, 83,-132, 32,-148, -52, 50, -1,-222,-231, -45, -43, -92,-111, -73,-201, 64; /M: SY='K'; M= -75,-228,-209, -67,-224,-142,-107, -59, 84, -55, 3,-202,-133, 39, 77, -92,-102, -76,-223,-212; /M: SY='E'; M= 18,-109, -17, 54, -91, -50,-128, -50, 50,-219, -14, 13,-214, -42, 30, 13, -37, -16,-228,-216; /M: SY='N'; M= -88, -1, -25, -68,-228, 37, -27,-230, 59,-110, -65, 76,-219, -52, 39, -28,-207,-227, -37,-218; /M: SY='K'; M= -71,-228,-105, 59,-229,-181,-103, -98, 91,-225, -33, -45,-213, 17, 20,-146,-209, -81,-225,-217; /M: SY='I'; M=-213,-225, -80,-135,-117,-104,-229, 97,-226, 1, 56,-225,-225,-223,-229,-222, -52, 22,-226,-207; /M: SY='S'; M= -13, -52, -73,-117,-223, -37, -9,-104, -15, -81,-215, 1, 24, -67, -38, 74, 64, -72, -61,-103; /M: SY='R'; M= -63, -42,-211,-199,-227,-112,-206,-100, 76,-225, -29, -79,-221, -62, 96,-108, -98,-113, -38,-214; /M: SY='E'; M= -39, -56, 72, 73, -86, -31, 23, -89, -90, -53, -63, -23, -22, 4, -59, -15,-112, -70,-236,-110; /M: SY='Q'; M= -38,-107, 49, 62,-225, -16, 11, -29, -83,-110, -41, -39,-216, 62, -47, -27, -23, -7,-230, -7; /M: SY='F'; M=-222, -51,-237,-231, 107,-118,-217,-130,-228, 40, 56,-229,-234,-230,-225,-225,-216, -97, 6, -68; /M: SY='V'; M=-120, -41,-109,-101, -41,-144,-229, 68,-225, 12, 25,-226, -58,-224,-227, -73, -37, 70,-228, -60; /M: SY='R'; M=-214, -82,-102,-108,-113,-134, -53, -61, 72,-109, -30, -40, -85, 56, 82, -46, -89,-132, -67,-214; /M: SY='K'; M=-103, -60,-129, -43, -11, -74, 45, -90, 57, -6, -11, -15,-104, 49, 43, -42, -16, -11,-225, -33; /M: SY='M'; M= -46, -54,-235,-227, -26,-233,-221, -7,-225, 61, 85,-229,-230,-221,-188,-222, -60, 46, -8,-205; /M: SY='R'; M=-217,-233,-215,-203,-225,-162,-205, -39, 14,-223, -36, -78,-225,-193, 114, -47,-120,-119,-226, -48; /M: SY='Q'; M= -42, -32, -5, -19, -52, -7, 0, -25, -11, 13, -2, 35,-221, 51, -41, 41, -21, -51,-230,-179; /M: SY='I'; M= -85,-105,-234,-112, -72,-238, -40, 97,-146, -12, -91,-226,-226,-225,-230, -70, -31, 33,-226, -23; /M: SY='V'; M= 40,-217,-229,-223,-153,-224, -61, 6,-222, -99,-198,-223,-226,-223,-225, -77, -2, 89,-235,-215; /M: SY='G'; M= -80, -82,-135,-114,-234, 106,-222,-242,-134,-237,-227,-202,-220,-218, -72,-120,-219,-235,-226,-229; /M: SY='D'; M= -75,-232, 116, 20,-238,-121, -74,-236,-131,-152, -63, -6,-218,-125, -73,-207,-209,-232,-250,-222; /M: SY='Q'; M= -53,-230, 16, 26,-231, -80, 15,-107, 61,-116, -79, 1, -67, 72, 18, -57, -6,-225,-230,-108; /M: SY='M'; M= -63,-221,-233,-225, -48,-233,-219, -1, -65, 66, 83,-228,-115, -65, -68, -56, -65, 27,-226,-206; /M: SY='L'; M=-218, -32,-235,-228,-116,-237,-220, -19,-107, 92, -12,-233,-235, -93,-226, -74, -92,-103,-223,-206; /M: SY='R'; M= -23,-226,-219,-101, -23,-197, -15, 19, 43, 6, -71, -96, -92,-204, 67, -43, 6, 2, -85, -45; /M: SY='S'; M= 18, -69, -29, -7,-103,-211, -7, -71, -47, -9, 16,-138, -83, 43, -34, 73, 7,-152, -27,-214; /M: SY='T'; M= 61,-217,-220, -92,-216,-103,-225, 37,-117,-114, -69,-118, -91, -77,-222, -41, 62, 31,-232,-217; /M: SY='I'; M= 15, -75,-232,-228, -63,-231, -82, 84,-226, 16, -2, -80,-227, -76,-228, -73, -47, 24,-227, -93; /M: SY='K'; M= -20,-101,-138, -61,-142,-130, -4, -44, 66,-120, 37, -13,-112, 18, 22, 11, 40, -68,-227, -6; /M: SY='K'; M= -11,-225, -37, 18, -66, -54, -47,-225, 55, -52,-116, 11,-218, 47, 16, 43, -38, -86,-229, -79; /M: SY='L'; M= -68, 2,-229, -72, 17,-134, 17, 31,-115, 55, -1, -84,-104, -58,-101, -24,-212, 10, -81, 42; /M: SY='Q'; M= -90, -28, -72, -90, -42, -40, 47,-110, -4, -60, -72, -33, -35, 99, 59, -65, -39,-105,-228,-101; /M: SY='Q'; M= -3, 18, -4, -38, -64, 23, -6,-108, -33, -71, 38, 24, -56, 48, -10, 19, -26, -44,-226, 17; /M: SY='Q'; M=-103, 34, -41, -42,-126, -77, -76, -74, 63, -48, -33, -26, -56, 82, -30, 7, -94, -86, -68, -5; /M: SY='P'; M= 0,-159, -49, -6, -61, -26, -9, -18, -1, -8, 16, -32, 36, 26, -20, -27, -16, 5,-235,-220; /M: SY='Q'; M= -16,-115, -53,-105, -31, -46, 0, -33, -6, -37, -47, 0, 32, 49, -16, 17, -27, -37,-106, -47; /M: SY='P'; M= -25, -31,-225, -42, -66, -24, -14, -51, -19, -6, -65, -10, 33, 7, 0, 22, -18, -38, -37, -59; /I: E1=0; IE=-255; DE=-255;» more |
Numerical results [info]
| Total number of hits | 8 in 8 different sequences |
| Number of true positive hits | 8 in 8 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 0 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
| Matrix type [info] | protein_domain |
| Scaling database [info] | reversed |
| Author [info] | CJA_Sigrist |
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 1 |
| Feature key [info] | DOMAIN |
| Feature description [info] | RST |
| Version [info] | 2 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
8 sequences
RCD1_ARATH (Q8RY59 ), SRO1_ARATH (O82289 ), SRO2_ARATH (Q9ZUD9 ), SRO3_ARATH (O64592 ), SRO4_ARATH (Q9STU1 ), SRO5_ARATH (Q9FJJ3 ), TAF4B_ARATH (F4K4L7 ), TAF4_ARATH (Q6SJR1 )» more
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| PDB [Detailed view] |
2 PDB
5N9Q; 5OAO |
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