PROSITE entry PS51962
View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission
General information about the entry
| Entry name [info] | COV_NSP1 |
| Accession [info] | PS51962 |
| Entry type [info] | MATRIX |
| Date [info] |
02-JUN-2021 CREATED;
23-FEB-2022 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC51962 |
| Associated ProRule [info] | PRU01307 |
Name and characterization of the entry
| Description [info] | Coronavirus (CoV) Nsp1 globular domain profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=123; /DISJOINT: DEFINITION=PROTECT; N1=6; N2=118; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.4485769; R2=0.0089645; TEXT='-LogE'; /CUT_OFF: LEVEL=0; SCORE=954; N_SCORE=11.0; MODE=1; TEXT='!'; /CUT_OFF: LEVEL=-1; SCORE=452; N_SCORE=6.5; MODE=1; TEXT='?'; /DEFAULT: M0=-38; D=-150; I=-150; B1=-1000; E1=-1000; MI=-380; MD=-380; IM=-380; DM=-380; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=0; BI=-380; BD=-380; /M: SY='R'; M= 19, -72, -66, -61, 3, -68, 34, -60, -54, 18, -54, -60, 32, -57, 43, 15, 35, -59, -69, 34; /M: SY='H'; M= -55, 23, 21, 20, -68, -64, 66, -31, 6, -68, -62, -49, -66, 21, -55, 59, 5, -5, -80, 12; /M: SY='N'; M= -60, -70, 59, -50, -75, -58, -52, -64, 17, -73, -67, 92, -71, -52, -56, 6, -49, 22, -92, -69; /M: SY='H'; M= -65, -81, -55, -48, -72, -70, 127, -77, -50, -65, 37, -47, -69, 79, -2, -56, -65, -78, -88, -44; /M: SY='V'; M= -56, -67, -84, -78, 28, -85, -81, 7, -76, 18, -40, -79, -80, -77, -76, -69, -54, 89, -78, -54; /M: SY='S'; M= 13, -67, -61, -56, -70, -61, -61, -60, 40, -63, 50, -52, -66, -51, 20, 60, 35, 0, -79, -64; /M: SY='C'; M= -62, 61, -82, -77, -49, -84, -75, 42, -76, 59, -37, -76, -80, -73, -77, -68, 10, 38, -78, -59; /I: I=-24; MD=-60; /M: SY='T'; M= 29, -82, -78, -73, -82, -78, -82, -73, -5, -3, -70, -73, 44, -75, -77, -61, 56, -69, -93, -82; D=-24; /I: I=-24; MD=-60; /M: SY='V'; M= -12, -80, -96, -90, 24, -94, -94, -39, -88, -7, -57, -91, -93, -90, -89, -79, -67, 74, -90, -67; D=-24; /I: I=-24; MI=0; MD=-60; IM=0; DM=-60; /M: SY='A'; M= 40, -82, -81, -83, 12, -79, -84, -67, -81, -75, -74, 27, -88, -82, -86, -65, 25, 22, -94, -77; D=-24; /I: I=-24; DM=-60; /M: SY='D'; M= -4, -78, 69, 36, -84, -8, -57, -84, -50, -82, -76, 41, -69, -51, 35, 14, -58, -78, -90, -73; D=-24; /I: I=-24; DM=-60; /M: SY='C'; M= -68, 98, 97, -45, -84, -69, -61, -86, -62, -82, -81, 20, -76, -64, -71, -60, -60, -80,-105, -77; D=-24; /I: I=-24; DM=-60; /M: SY='M'; M= -18, -76, -68, -6, -60, -72, -61, -55, -55, -15, 54, -65, 18, -57, 47, 38, -57, 23, -73, 37; D=-24; /I: I=-24; DM=-60; /M: SY='C'; M= 12, 50, -56, 42, -70, -70, -59, -62, -48, 12, -57, 17, 15, 36, 47, -57, -59, -8, -79, -67; /M: SY='I'; M= -59, 33, -82, -77, -49, -83, -78, 57, -76, 46, -38, -76, -79, -73, -77, -6, -56, 56, -78, -59; /M: SY='S'; M= -58, 38, -60, -57, -67, -66, -60, -63, 38, 23, -57, 29, 27, -53, 36, 39, 11, -63, -79, -65; /M: SY='G'; M= 38, -71, -68, -68, -68, 66, -71, -3, 16, 5, -57, -59, -70, -63, -66, -53, -60, 10, -75, -69; /M: SY='W'; M= -61, -74, -67, -60, 61, -70, -63, -7, -60, -1, -55, 1, 30, 61, -63, 23, 26, -59, 66, -46; /M: SY='G'; M= -55, -79, 15, 58, -83, 64, -63, -84, -57, -82, -74, -53, 53, -53, -66, 16, -59, -79, -79, -76; /M: SY='W'; M= -68, 91, 36, -68, 42, -74, -73, 3, -70, 1, -60, 13, -80, -72, -74, -68, -66, -62, 120, -45; /M: SY='C'; M= -14, 91, -70, -67, 48, -13, 46, -66, -68, -13, -60, -61, 52, -67, -71, 39, -56, -64, -74, -55; /M: SY='V'; M= -55, -69, -70, 21, -5, -80, -75, 41, -67, -43, 30, -69, -72, -66, -71, -8, 18, 73, -80, -59; /M: SY='Q'; M= -19, -81, 47, 59, -80, -70, -55, -15, -45, -70, -64, -52, 6, 77, 23, -55, -60, -14, -80, -67; /M: SY='S'; M= -14, -72, 26, 56, -80, 31, -59, -80, 3, -79, -72, -48, -62, -47, -57, 67, -50, -73, -81, -70; /I: I=-16; MD=-41; /M: SY='E'; M= 1, -87, -61, 55, -88, -80, -73, -79, -67, -18, -77, 23, -80, 5, -73, 15, -68, -17, -96, -84; D=-16; /I: I=-16; MD=-41; /M: SY='T'; M= -85, -97, -99, -98, -83,-100, -97, 9, -97, 22, -72, -90,-100, -92,-100, 20, 23, -71,-107, -88; D=-16; /I: I=-16; MI=0; MD=-41; IM=0; DM=-41; /M: SY='A'; M= 90, -62, -70, -63, -71, -54, -72, -52, -65, -60, -57, -65, -68, -62, -69, -45, -52, 36, -78, -69; /M: SY='L'; M= -64, -71, -75, 11, 35, -83, -64, -36, -71, 63, -38, -77, -80, -67, -71, -71, -61, 36, -61, 47; /M: SY='Q'; M= -26, -74, -51, 31, -78, -63, -54, -67, 3, -71, -62, 35, -66, 79, 22, 44, -52, 4, -79, -65; /M: SY='Y'; M= -61, -75, -55, 52, 24, -73, 31, -59, -53, -3, -55, -59, -69, 41, -5, 16, -2, -4, -62, 59; /M: SY='Y'; M= 35, -70, -71, -68, -52, 6, -63, 17, -61, -54, -52, -65, -73, -63, 22, -55, 17, 44, -64, 63; /M: SY='S'; M= -52, -72, -53, 21, -77, -61, -57, -78, 63, -77, -68, -48, -64, -43, 38, 74, -47, -71, -78, -66; /M: SY='E'; M= 43, -72, 3, 60, -68, -62, -56, -71, -51, -70, -64, -54, -63, 43, -57, 22, 18, -64, -71, 37; /M: SY='H'; M= 45, 54, -69, -61, -65, -68, 65, 21, -63, -53, 33, -62, -72, 46, -64, -55, -57, 36, -82, -59; /M: SY='L'; M= 30, -68, -79, -73, -43, -76, -65, -37, -73, 73, -36, -77, -80, -68, -72, -66, -60, 10, -66, 38; /M: SY='K'; M= 6, -71, -65, -55, -67, -70, -64, -52, 65, -12, -56, -58, -70, -51, 44, 17, -54, 44, -77, -64; /M: SY='N'; M= -56, -70, 3, 24, -77, -60, -54, -74, 46, -76, -67, 68, -64, 13, -48, 35, 43, -70, -84, -68; /M: SY='G'; M= -55, -79, -63, -62, -82, 79, -68, -83, 38, -83, -72, -54, 64, -61, -61, -53, -12, -79, -75, -76; /M: SY='F'; M= -57, -71, -60, 29, 69, 14, -65, -64, -61, -62, -62, -57, 32, -61, -67, 31, 54, -62, -66, -49; /M: SY='C'; M= 3, 70, 20, 2, -72, -70, -62, -67, 54, 0, 17, -57, 44, 11, -2, -59, -59, -66, -79, -68; /I: I=-45; MD=-115; /M: SY='G'; M= 4, -88, -76, -71, -88, 57, -75, 7, -66, -81, -73, -66, -80, 55, 16, -63, -75, -75, -85, -80; D=-45; /I: I=-45; MI=-115; IM=-115; DM=-115; /M: SY='C'; M= -65, 82, -82, -78, -44, -83, -66, 32, -75, 62, 52, -77, -82, -71, -75, -72, -62, -41, -68, 38; /M: SY='V'; M= -56, -70, -73, -67, -56, -75, -68, 16, -57, 34, -45, -66, -76, -60, 46, 39, -53, 55, -79, -60; /M: SY='F'; M= -69, -74, -70, 30, 95, -81, -63, 0, 11, 6, -50, -70, -77, -67, -64, -69, -64, -21, -50, 27; /M: SY='V'; M= -53, -69, -69, 18, -58, -77, -72, -30, -64, 3, -46, -69, -74, 31, -67, 10, -52, 84, -83, -62; /M: SY='P'; M= 40, -77, -58, 32, -81, -61, -65, -73, -58, -78, -68, -63, 97, -56, -67, 28, -53, -69, -79, -76; /M: SY='W'; M= -65, 56, -69, 17, 5, -78, -63, 2, 29, 32, 55, -68, -74, 16, -58, -67, -63, -54, 75, 27; /M: SY='H'; M= -12, -77, 20, -61, -52, 44, 80, -73, -59, -68, -60, -52, -71, -57, 6, -54, 18, -71, -61, 79; /M: SY='M'; M= -59, 34, -75, -70, -52, -76, -67, -36, -6, 52, 55, -9, -77, -64, -12, 10, -55, 45, -78, -59; /M: SY='Q'; M= 10, -74, -65, -52, -64, -70, -58, -57, 2, 44, -48, -60, -73, 74, 50, 5, -59, -58, -73, -60; /I: I=-36; MD=-90; /M: SY='D'; M= -86,-104, 65, -67,-105, 15, 37,-110, -73,-104, -96, -65, -92, -76, 24, -79, -85,-105,-113, -88; D=-36; /I: I=-36; MD=-90; /M: SY='C'; M= 37, 52, -94, -90, 4, -87, 32, -82, -90, -4, -76, -86, -97, -88, -92, -76, -12, -77, -99, -79; D=-36; /I: I=-36; MI=0; MD=-90; IM=0; DM=-90; /M: SY='M'; M= -83, -96, 21, -15, -88, -97, -88, -6, -85, -74, 53, -81, 16, -84, -91, -80, 24, 6,-107, -87; D=-36; /I: I=-36; DM=-90; /M: SY='G'; M= -56, 54, -65, -64, -81, 77, -67, -84, 21, -82, -71, -55, 45, -60, 30, -54, -64, -79, -77, -75; /M: SY='H'; M= -62, 56, 4, -62, 32, 4, 60, 35, -64, -20, -51, -4, -75, 49, -66, -61, -60, 24, -76, -53; /M: SY='L'; M= -19, -70, -64, -7, 23, -71, -60, -48, -59, 61, -44, 45, -12, -60, 21, 3, -58, -52, -72, -55; /M: SY='P'; M= -64, -86, 39, 32, -85, -2, -63, -78, 16, -83, -72, -59, 102, -56, -62, -60, -59, -79, -81, -78; /M: SY='D'; M= -60, -79, 70, -4, -84, 43, -56, -83, 46, -81, -72, 17, -66, 50, -49, -52, -60, -80, -82, -70; /M: SY='P'; M= -61, -81, 38, -54, -80, 34, 50, -77, -57, -79, -69, -53, 86, -60, 9, -54, 32, -76, -84, -70; /M: SY='Y'; M= -26, -81, -72, -67, -37, -76, -51, -56, -52, -59, -55, -70, 7, -57, 56, -65, -64, 17, 82, 101; /M: SY='V'; M= 6, -65, -78, -73, -57, -78, -82, -24, -71, -43, -45, -72, -75, -74, -74, -59, 24, 94, -87, -63; /M: SY='M'; M= -66, -74, -81, -77, 43, -80, -55, 47, -70, -35, 108, -73, -76, -65, -69, -71, -62, -41, -53, 74; /M: SY='G'; M= -13, -72, -72, -75, -59, 66, -72, 29, -72, 40, -48, -62, -72, -69, -76, -57, 9, -12, -74, -65; /M: SY='V'; M= -60, -70, 10, -65, -52, -81, -72, 2, 28, 51, -40, -70, -77, -66, -63, -68, -57, 63, -79, -59; /I: I=-23; MD=-58; /M: SY='F'; M= -69, -78, -62, 51, 68, -82, 20, -13, -56, 1, -57, -66, -74, -58, 35, -65, 20, -61, -67, -47; D=-23; /I: I=-23; MD=-58; /M: SY='R'; M= -78,-100, -84, -80,-101, 49, -82,-107, 12,-101, -90, -73, -91, -71, 56, -76, -87,-101, -95, -91; D=-23; /I: I=-23; MI=0; MD=-58; IM=0; DM=-58; /M: SY='R'; M= -70, -83, -66, -64, -83, -77, -65, -80, 1, -82, -74, 43, -81, -56, 74, 10, 18, -17, -92, -75; D=-23; /I: I=-23; DM=-58; /M: SY='Y'; M= -72, -83, -76, -74, 5, 7, 28, -65, -67, 21, -60, 3, -85, 4, 21, -68, 17, -25, -76, 33; D=-23; /I: I=-23; DM=-58; /M: SY='C'; M= -67, 50, -75, -68, 4, -81, -76, 15, 25, -68, -66, -66, -79, 34, -65, 16, 39, -7, -87, -70; D=-23; /I: I=-23; DM=-58; /M: SY='S'; M= -4, -67, -68, -67, -58, 16, -67, -48, -66, 46, -48, -59, -71, -61, -69, 59, 18, 13, -78, -62; /M: SY='C'; M= -61, 102, 58, -57, -4, 15, -67, 2, 11, -67, -66, -53, -75, -64, -3, -12, -59, -9, -85, -67; /M: SY='N'; M= 46, 23, -57, 3, -66, -60, -59, -63, -54, 0, 27, 66, -71, -55, 17, -51, 4, -61, 66, -63; /I: I=-38; MI=0; MD=-97; IM=0; DM=-97; /M: SY='Y'; M= -66, -80, -58, 15, 14, -74, 31, -67, 32, -30, -56, 1, -73, 42, 39, -60, -63, -68, -53, 85; /M: SY='C'; M= -3, 83, -75, -71, 7, -9, -72, 15, -70, 5, 33, -66, 30, -69, -74, 13, -3, 22, -78, -62; /M: SY='V'; M= 27, -66, 24, -63, -62, -13, -70, -42, -65, 5, 19, -59, -70, -65, -70, -15, 49, 54, -83, -64; /M: SY='N'; M= -62, 51, -13, -61, -62, -69, 46, -54, -11, 0, -56, 57, 49, -61, -64, -56, 20, 27, -81, 16; /I: I=-33; MD=-84; /M: SY='H'; M= -75, -80, 20, -66, 73, -78, 85, -66, -5, 0, -59, 30, -82, -67, -66, -68, -68, -70, -71, -42; D=-33; /I: I=-33; MD=-84; /M: SY='G'; M= 4, -76, 3, -67, -76, 53, -70, -72, 16, -6, 27, -58, -73, -64, -67, 14, 20, -69, -83, -73; D=-33; /I: I=-33; MD=-84; /M: SY='H'; M= -67, -84, 39, 18, -71, -73, 105, -78, -63, -75, -68, -53, -74, -56, -64, 25, -64, -12, 65, -5; D=-33; /I: I=-33; MD=-84; /M: SY='R'; M= -65, -80, -72, -64, -72, -80, -67, -51, 2, -61, 44, 9, 30, 23, 53, -66, -62, 51, -86, -69; D=-33; /I: I=-33; MD=-84; /M: SY='P'; M= 30, -86, -76, -69, -92, -11, -79, -83, -72, -88, -79, -71, 70, 13, -79, 14, 16, -78, -92, -86; D=-33; /I: I=-33; MI=-84; IM=-84; DM=-84; /M: SY='Y'; M= -11, -70, -72, -68, 40, -75, -62, 9, -64, 20, 23, 8, -76, 18, -8, -61, 17, 36, -64, 40; /I: I=-19; MD=-47; /M: SY='Q'; M= 10, -87, -78, -66, -84, -80, 10, -70, -63, -17, -68, -71, -85, 65, 23, 9, -70, 12, -92, -75; D=-19; /I: I=-19; MD=-47; /M: SY='E'; M= -11, -86, -71, 46, -67, -89, -73, -65, -73, 33, 26, -80, -82, -67, -78, -73, 14, -66, -84, 16; D=-19; /I: I=-19; MD=-47; /M: SY='Y'; M= -16, -86, -87, -82, 24, -89, -70, -61, -80, 28, 27, -83, -90, 13, -80, -75, 14, -65, -68, 58; D=-19; /I: I=-19; MD=-47; /M: SY='M'; M= -6, -82, -74, -78, -73, -78, -71, -63, -70, -69, 49, 43, -85, -71, -1, -1, 16, 22, -90, 15; D=-19; /I: I=-19; MD=-47; /M: SY='M'; M= 32, -81, -86, -80, 21, -80, -83, 15, -7, -64, 35, -77, -84, -77, -78, -1, -1, 7, -86, -69; D=-19; /I: I=-19; MD=-47; /M: SY='D'; M= -13, -90, 57, 31, -97, 4, -71, -93, -66, -91, -86, -60, -78, 31, -73, -1, -1, -87, -99, -84; D=-19; /I: I=-19; MD=-47; /M: SY='P'; M= -11, -92, -76, 12, -82, -12, -78, -74, 2, 20, -17, -79, 57, 13, -74, -74, -74, -76, -89, -82; D=-19; /I: I=-19; MD=-47; /M: SY='D'; M= 4, -98, 61, 19,-103, -86, -80, -92, -78, -97, -94, 12, -90, -75, -86, -76, -79, -15,-114, -94; D=-19; /I: I=-19; MD=-47; /M: SY='G'; M= -73,-101, -88,-100,-107, 79, -95,-115, -94,-110, -99, -74, -92, -91,-101, -73, -92,-108, -98,-102; D=-19; /I: I=-19; MD=-47; /M: SY='V'; M= -15, -91,-102, -97, -80, -99,-104, 20, -96, -67, -69, -95, -99, -95, -98, -5, -74, 59,-107, -86; D=-19; /I: I=-19; MD=-47; /M: SY='C'; M= -17, 82, -94, -83, -92, -97, -88, -9, -79, -19, -78, -86,-101, 47, 7, -82, -85, -80,-104, -90; D=-19; /I: I=-19; MD=-47; /M: SY='Y'; M= -89, -97,-101,-100, 19, -15, -79, -67, -95, 8, 26, -96,-104, -92, -93, -91, -87, -7, -72, 65; D=-19; /I: I=-19; MD=-47; /M: SY='G'; M= -74, -98, -89, -98,-101, 70, -92,-101, -92, -97, 24, -75, -91, -89, -98, -73, -3, -97, -99, -97; D=-19; /I: I=-19; MD=-47; /M: SY='R'; M= 4, -95, -81, -79, -98, -88, -80, -96, -62, -96, -87, 24, -93, -72, 60, -72, 27, -89,-105, -90; D=-19; /I: I=-19; MD=-47; /M: SY='G'; M= -73, -93, -86, -91, -95, 46, -91, -93, -88, -24, -87, -74, -90, -85, -94, 27, 27, -89,-102, -93; D=-19; /I: I=-19; MI=0; MD=-47; IM=0; DM=-47; /M: SY='N'; M= -58, -75, 21, -57, -76, 57, -54, -72, -53, -69, 63, 68, -70, 37, 18, -52, -59, -73, -81, -68; /M: SY='F'; M= -12, -70, -72, -9, 68, -78, -68, 21, 23, 35, -45, -68, -74, -66, -63, -63, 21, -3, -63, -44; /M: SY='H'; M= -62, 22, -65, -57, -12, -75, 57, 12, 22, -16, -54, -57, 15, 35, 40, -57, 34, 12, -79, -57; /I: I=-42; MI=0; MD=-106; IM=0; DM=-106; /M: SY='G'; M= -49, -77, -64, -76, -83, 103, -71, -91, -70, -86, -75, -50, -68, -67, -77, -49, -68, -84, -74, -78; /M: SY='W'; M= -66, -80, -92, -78, 29, -77, -80, -45, -72, -48, 84, -83, -78, -70, -73, -75, -69, 39, 145, -36; /M: SY='F'; M= -67, -71, -86, -80, 75, -86, -72, 41, -78, 55, -37, -79, -82, -78, -77, -74, -62, 16, -60, -40; /M: SY='V'; M= -61, -69, -85, -79, 62, -85, -78, 36, -77, 23, -40, -79, -81, -78, -77, -71, -57, 71, -68, -46; /M: SY='P'; M= -68, -87, -70, -59, 51, -71, -67, -69, -59, -71, -65, -72, 113, -66, 20, -65, -61, -73, -69, -60; /M: SY='H'; M= 7, -71, -69, -67, 43, -68, 66, -51, -66, 4, 37, -61, -74, -61, -65, 39, -55, 8, -60, 62; /M: SY='N'; M= 9, -70, 59, -51, -75, 7, -56, -62, -56, -70, -65, 72, -69, 23, -62, -49, 19, 22, -89, -69; /M: SY='C'; M= 22, 82, 11, -66, 52, 23, -68, -1, -68, -62, -63, -57, -74, -66, -72, 43, -55, -59, -72, -56; /M: SY='M'; M= -59, -73, 8, 46, -69, -63, -54, 11, -54, -60, 75, 72, 19, -50, -60, 21, -52, -60, -83, -66; /M: SY='P'; M= -62, -76, -70, -66, -50, 8, -61, -8, -67, 32, -51, -67, 73, -65, -71, 4, 19, -57, -62, 63; /M: SY='V'; M= -31, -72, -64, 40, 47, -75, -70, -41, -64, -19, -53, -69, 45, -63, -69, 10, -55, 61, -72, -55; /M: SY='Y'; M= -61, -71, -71, -66, -45, -78, -61, 29, -65, 41, -42, -65, -73, 36, -66, -58, 55, 6, -63, 61; /M: SY='E'; M= 39, -71, -55, 51, -75, 43, -63, -64, -57, -66, 36, -57, -65, 11, -63, 18, -56, 6, -77, -69; /M: SY='E'; M= -63, -80, 41, 63, -65, -2, 47, -79, 34, -73, -66, -51, -65, -44, 25, -58, -62, -76, -69, 52; /M: SY='F'; M= -67, -77, 12, -52, 63, -75, 30, -63, 41, 0, -55, -57, -74, 53, 37, -62, -63, -65, -61, 20; /M: SY='W'; M= -65, -77, 59, -7, 28, -67, -61, 2, -8, -66, -65, 48, -70, 16, -61, -56, 26, -66, 104, -50; /M: SY='F'; M= -65, -71, 9, -74, 66, -84, -73, 38, -76, 41, -40, -74, -80, -76, -76, -71, -60, 45, -65, -44; /M: SY='Q'; M= -33, -71, -72, -61, -55, -78, -67, 10, 15, 52, -40, -68, -75, 58, -59, -63, -6, 42, -76, -58; /I: I=-33; MI=0; MD=-84; IM=0; DM=-84; /M: SY='F'; M= -69, -71, -86, -80, 74, -86, -70, 29, -78, 69, -35, -80, -83, -76, -76, -76, -64, -40, -59, -40; /M: SY='R'; M= 6, 50, -65, -58, -77, 33, -59, -82, -35, -75, -66, -56, -74, -48, 97, -57, -64, -73, -77, -67; /M: SY='K'; M= -64, -79, -57, -44, -77, -72, 25, -80, 94, -77, -65, -50, -66, -40, 65, -58, -60, -76, -74, -63; /M: SY='N'; M= -61, 61, -57, -63, -59, 22, -54, -68, 0, -5, -60, 67, -74, -57, 31, -53, 21, -67, -70, 50; /M: SY='G'; M= -11, -76, -65, -75, -71, 97, -67, -85, -69, -81, -72, -52, -69, -66, -75, -50, -67, -79, -67, 32; /I: E1=0; IE=-380; DE=-380;» more |
Numerical results [info]
| Total number of hits | 54 in 54 different sequences |
| Number of true positive hits | 54 in 54 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 0 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
| Taxonomic range [info] | Eukaryotic viruses |
| Maximum number of repetitions [info] | 1 |
| Matrix type [info] | protein_domain |
| Scaling database [info] | reversed |
| Author [info] | CJA_Sigrist |
| Feature key [info] | DOMAIN |
| Feature description [info] | CoV Nsp1 globular |
| Version [info] | 2 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
54 sequences
R1AB_BC133 (P0C6W1), R1AB_BC279 (P0C6V9), R1AB_BC512 (P0C6W0), R1AB_BCHK3 (P0C6W2), R1AB_BCHK4 (P0C6W3), R1AB_BCHK5 (P0C6W4), R1AB_BCHK9 (P0C6W5), R1AB_BCRP3 (P0C6W6), R1AB_CVBEN (P0C6W7), R1AB_CVBLU (P0C6W8), R1AB_CVBM (P0C6W9), R1AB_CVBQ (P0C6X0), R1AB_CVH22 (P0C6X1), R1AB_CVHN1 (P0C6X2), R1AB_CVHN2 (P0C6X3), R1AB_CVHN5 (P0C6X4), R1AB_CVHNL (P0C6X5), R1AB_CVHOC (P0C6X6), R1AB_CVM2 (P0C6X8), R1AB_CVMA5 (P0C6X9), R1AB_CVMJD (P26627), R1AB_CVMJH (P0C6Y0), R1AB_CVPPU (P0C6Y5), R1AB_FIPV (Q98VG9), R1AB_MERS1 (K9N7C7), R1AB_PEDV7 (P0C6Y4), R1AB_SARS (P0C6X7), R1AB_SARS2 (P0DTD1), R1A_BC133 (P0C6F7), R1A_BC279 (P0C6F5), R1A_BC512 (P0C6F6), R1A_BCHK3 (P0C6F8), R1A_BCHK4 (P0C6T4), R1A_BCHK5 (P0C6T5), R1A_BCHK9 (P0C6T6), R1A_BCRP3 (P0C6T7), R1A_CVBEN (P0C6T8), R1A_CVBLU (P0C6T9), R1A_CVBM(P0C6U0), R1A_CVBQ(P0C6U1), R1A_CVH22 (P0C6U2), R1A_CVHN1 (P0C6U3), R1A_CVHN2 (P0C6U4), R1A_CVHN5 (P0C6U5), R1A_CVHNL (P0C6U6), R1A_CVHOC (P0C6U7), R1A_CVM2(P0C6U9), R1A_CVMA5 (P0C6V0), R1A_CVMJH (P0C6V1), R1A_CVPPU (P0C6V2), R1A_MERS1 (K9N638), R1A_PEDV7 (P0C6V6), R1A_SARS(P0C6U8), R1A_SARS2 (P0DTC1)» more
|
| PDB [Detailed view] |
41 PDB
2GDT; 2HSX; 3ZBD; 6IVC; 6IVD; 6LP9; 6ZLW; 6ZM7; 6ZME; 6ZMI; 6ZMO; 6ZMT; 6ZN5; 6ZOJ; 6ZOK; 6ZON; 6ZP4; 7EQ4; 7K3N; 7K5I; 7K7P; 7OPL; 8A4Y; 8A55; 8AOU; 8AYS; 8AZ8; 8CRF; 8CRK; 8CRM; 8PPL; 8RF2; 8RF3; 8RF4; 8RF5; 8RF6; 8RF8; 8RFC; 8RFD; 8RFF; 8T4S » more |