PROSITE entry PS51965
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General information about the entry
| Entry name [info] | AG_I_II_AR |
| Accession [info] | PS51965 |
| Entry type [info] | MATRIX |
| Date [info] |
02-JUN-2021 CREATED;
02-JUN-2021 DATA UPDATE; 08-NOV-2023 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC51965 |
| Associated ProRule [info] | PRU01310 |
Name and characterization of the entry
| Description [info] | Streptococcus antigen I/II alanine-rich (Ag I/II A) repeat profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=82; /DISJOINT: DEFINITION=PROTECT; N1=1; N2=82; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=3.3393261; R2=0.0028050; TEXT='-LogE'; /CUT_OFF: LEVEL=0; SCORE=2910; N_SCORE=11.5; MODE=1; TEXT='R'; /CUT_OFF: LEVEL=-1; SCORE=1127; N_SCORE=6.5; MODE=1; TEXT='R?'; /DEFAULT: M0=-32; D=-150; I=-150; B1=-1000; E1=-1000; MI=-380; MD=-380; IM=-380; DM=-380; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=0; BI=-380; BD=-380; /M: SY='Q'; M= 41,-74, 36, 41,-42,-64,-32,-72, 26,-36,-65, -3,-66, 49,-32,-26,-13,-48,-80,-67; /M: SY='A'; M= 62,-71, 24, 22,-78,-61,-63,-62, 25,-53,-65,-29, 14, 16,-56,-28, -1,-28,-80,-71; /M: SY='K'; M= 27,-70, 12, -1,-74,-62,-21,-71, 45,-33,-64, 36,-66, 1,-28, 24, 31,-60,-80,-22; /M: SY='K'; M=-40,-74,-24, 35,-74,-68,-57,-69, 66,-27,-63, 46,-66, 31,-43,-32, 24,-17,-79,-30; /M: SY='A'; M= 71,-69, -1, 43,-79,-59,-63,-71,-13,-63,-65,-43,-65, 31,-15,-47, 10,-61,-79,-71; /M: SY='Q'; M= 47,-75, 46, 6,-83,-39,-57,-76, 15,-74,-66,-35,-66, 80,-51,-12,-35,-69,-80,-68; /M: SY='Y'; M= 20,-78,-72,-70,-23,-49,-15, 7,-66,-33,-51,-70,-79, 4,-65,-62,-63,-30,-39,115; /M: SY='Q'; M= -1,-80, 67, 14,-86,-66,-54,-78, 29,-76,-67,-17,-66, 89,-47,-52,-43,-51,-82,-67; /M: SY='A'; M= 63,-68,-49, -5,-76,-59,-64,-24, 42,-68,-63,-10,-66, 9,-21, 8, 20,-34,-78,-69; /M: SY='D'; M= 51,-73, 75, 21,-82,-61,-60,-50, 25,-76,-70,-20,-66, 1,-56,-38,-31,-68,-85,-71; /M: SY='N'; M=-42,-72,-63,-62,-54,-72,-59,-32, 39, 49, -6, 56,-76, 1,-55,-62,-58, 11,-73, 23; /M: SY='A'; M= 66,-68,-35, 16,-77,-59,-53,-38, 15,-64,-62,-31,-66, 39,-31,-10, 24,-28,-79,-69; /M: SY='A'; M= 78,-66,-32, 3,-76,-56,-66,-43, -7,-57,-62,-31,-67, 15,-56, 15,-12,-19,-78,-70; /M: SY='Y'; M= 29,-78,-66,-64,-35,-69, 32,-63,-40,-60,-55, -4,-77, 28,-60,-37,-62,-64,-42,112; /M: SY='Q'; M= -4,-78, 32, 40,-81,-68,-55,-50, 11,-44,-63, 11,-66, 88,-24,-53,-17,-11,-80,-67; /M: SY='A'; M= 55,-70, 4, 23,-78,-55,-61,-70, 25,-51,-64,-16,-65, 49,-54, -3, 24,-42,-79,-69; /M: SY='E'; M= 22,-77, 25, 83,-80,-45,-57,-77, 20,-32,-68,-10,-62, -4,-52,-36,-55,-56,-81,-72; /M: SY='Y'; M=-62,-73,-74,-67,-45,-39,-63,-16, 28, 38,-45,-69,-77,-12,-41,-42, -7, 47,-33, 62; /M: SY='A'; M= 61,-69, 19, 23,-78,-58,-61,-71, 28,-73,-66, 35,-66, -9,-55, 2,-22,-29,-81,-71; /I: I=-36; MD=-90; /M: SY='R'; M= -2,-81,-22, 34,-82,-73,-58,-72, 51,-77,-67,-55,-69, 44, 67,-57, -5,-74,-79,-68; D=-36; /I: I=-36; MI=0; MD=-90; IM=0; DM=-90; /M: SY='Y'; M= 40,-71,-28, -7,-53,-72,-68, 49,-34,-42,-50,-67,-72,-43,-69,-44, 6, 38,-68, 50; /M: SY='Q'; M=-62,-78, 37, 28,-81,-69,-55,-46, 49,-58,-65, 25,-66, 76,-24,-53, 15,-27,-81,-67; /M: SY='A'; M= 67,-69,-15, 20,-77,-60,-64,-24, 22,-68,-62,-57,-66, 36,-31, -9, 3,-22,-78,-69; /M: SY='E'; M= 59,-72, 16, 62,-46,-62,-61,-75, 29,-73,-67,-25,-63,-16,-41,-50,-14,-65,-79,-70; /M: SY='N'; M=-65,-74,-24,-13,-32,-62,-46,-51, 25,-72,-64, 94,-21, 12,-53,-53,-55,-47,-66, 69; /M: SY='A'; M= 61,-71, 37, -1,-80,-60,-62,-70, 38,-71,-65,-43,-66, 43,-52, -6,-26,-26,-80,-69; /M: SY='A'; M= 73,-68, 6, 2,-78,-57,-63,-69, -5,-52,-63, -1,-67, 35,-34,-15, 8,-46,-79,-70; /M: SY='A'; M= 74,-68,-69,-55,-60,-60,-64, 2, -8,-14,-55,-64,-70, 2,-39,-49, 9,-37,-67, 45; /M: SY='K'; M=-43,-80, 49,-24,-53,-70,-56,-78, 78,-45,-66,-48,-66, 69, 2,-56,-60,-76,-77,-65; /M: SY='A'; M= 69,-68, -6, 34,-76,-59,-64,-43, 10,-51,-63,-31,-66, -1,-28, 10,-25,-21,-79,-70; /M: SY='Q'; M= 27,-76, 33, 35,-56,-65,-56,-77, 39,-75,-67, 10,-65, 64, -5,-25, -7,-71,-80,-68; /M: SY='Y'; M=-70,-79,-69,-73,-26,-77,-14,-42,-66, -4,-49, 16,-83,-62,-65,-66,-63, 0,-37,121; /M: SY='E'; M= 22,-78, 57, 84,-84,-43,-56,-82,-48,-78,-73,-13,-62, 15,-57,-32,-59,-74,-84,-73; /M: SY='Q'; M= 1,-76,-52, 37,-78,-68,-57,-55, 63,-44,-62,-26,-64, 74,-21,-21, 5,-26,-76,-66; /M: SY='D'; M= 50,-72, 62, 9,-75,-60,-57,-74, 47,-75,-68, 25,-66,-43,-51,-40,-41,-59,-79, 5; /M: SY='L'; M= 2,-71,-66, -7,-57,-74,-38,-17, 30, 48, 31, -1,-73, 40,-28,-62,-58, 22,-75,-59; /M: SY='A'; M= 85,-65,-61, 13,-76,-54,-66,-66, 6,-68,-62,-59,-65, -6,-18,-39, -5,-35,-76,-70; /M: SY='A'; M= 57,-70, 1, 39,-77,-61,-61,-46, 38,-70,-64,-54,-63, 31,-29, -8, 13,-36,-78,-68; /M: SY='Y'; M=-44,-29, 7,-29,-42,-67, 38,-18,-11,-46,-56, 66,-75,-27,-31,-56,-18,-29,-53, 96; /M: SY='N'; M=-32,-73, 34, 8,-76,-52,-53,-63, 52,-41,-65, 63,-66, 51,-45,-17, 23,-67,-81,-37; /I: I=-12; MD=-29; /M: SY='A'; M= 68,-76,-54, 2,-86,-42,-77,-50, 1,-77,-72,-70,-76,-14,-70,-37, -2,-21,-88,-80; D=-12; /I: I=-12; MI=0; MD=-29; IM=0; DM=-29; /M: SY='K'; M= 5,-93, 12, 33,-98,-83, 11,-95, 36,-92,-84,-20,-81, 25,-33,-69,-28,-89,-98,-84; D=-12; /I: I=-12; DM=-29; /M: SY='N'; M=-77,-84,-61,-45,-43,-74,-27,-20,-10,-37,-70, 83,-87,-66,-40,-65,-27,-47,-77, 59; D=-12; /I: I=-12; DM=-29; /M: SY='D'; M= 37,-83, 46, 21,-92,-72,-49,-86, 1,-86,-80, 14,-76, 6,-56,-60, 7,-78,-96,-81; D=-12; /I: I=-12; DM=-29; /M: SY='A'; M= 45,-80,-32, 39,-75,-71,-69,-78,-10,-52,-72,-27,-74, 36, 2,-12,-11,-39,-87,-77; D=-12; /I: I=-12; DM=-29; /M: SY='I'; M= 26,-79, -9,-52,-66,-77,-75, 52, 34,-18,-55,-40,-77,-10,-64,-37,-53, 6,-80, -6; D=-12; /I: I=-12; DM=-29; /M: SY='Q'; M= 1,-79,-46, 20,-75,-47,-67,-18, 24, -7,-18, -1,-74, 55,-58,-39, 6, 13,-84,-71; D=-12; /I: I=-12; DM=-29; /M: SY='A'; M= 85,-65,-41, 5,-75,-54,-65,-65,-11,-50,-61,-59,-65, 23,-60,-10,-15,-36,-76,-44; /M: SY='E'; M= -7,-78, 43, 86,-80,-70,-55,-66, 16,-75,-70,-51,-60, 33,-50,-53, 4,-73,-80,-26; /M: SY='N'; M=-45,-71,-48,-37,-29,-60,-48,-55, 46,-36,-60, 92,-73,-51,-43,-35,-53, 1,-68, 59; /M: SY='A'; M= 56,-69, 7, 55,-76,-53,-60,-69,-14,-43,-64, 8,-63, 21,-41,-25, 31,-46,-80,-69; /M: SY='A'; M= 70,-70,-58, 25,-75,-59,-60,-70, 9,-69,-62,-58,-66, 48, 29,-30,-29,-43,-74,-19; /M: SY='I'; M= 37,-73, -7, -5,-55,-73,-71, 75,-25,-33,-46,-67,-71,-28,-70,-39,-41, 13,-71, 24; /I: I=-36; MD=-90; /M: SY='Q'; M=-36,-80, 39, 10,-56,-71,-58,-74, 56,-41,-20, 3,-69, 57, 23,-44, -4,-35,-81,-67; D=-36; /I: I=-36; MD=-90; /M: SY='K'; M= 51,-73,-58, 19,-81,-54,-62,-75, 57,-74,-31,-37,-66, 49,-37,-14, -2,-67,-78,-70; D=-36; /I: I=-36; MD=-90; /M: SY='R'; M= 40,-77, 14, 16,-47,-53,-61,-48, -1,-60,-67,-19,-72, 28, 56,-27,-15,-46,-79,-17; D=-36; /I: I=-36; MI=-90; MD=-90; IM=-90; DM=-90; /M: SY='N'; M=-67,-74,-46,-64,-52,-60,-43,-71,-55,-74,-27,106,-79,-55,-61,-52,-54,-75,-65, 81; D=-36; /I: I=-36; DM=-90; /M: SY='A'; M= 65,-70, 30, 38,-78,-47,-59,-55,-23,-52,-64, 1,-65, 48,-34,-47,-12,-48,-79,-69; /M: SY='Q'; M= 46,-71, 3, 21,-77,-62,-59,-63, 28,-51,-62,-38,-64, 64,-20, 6, 29,-37,-78,-67; /M: SY='A'; M= 80,-50, 0,-39,-71,-55,-66,-42, 26, 0,-58,-38,-41,-56,-54,-13,-53,-54,-76,-68; /M: SY='K'; M=-62,-79,-54, 23,-52,-71,-29,-73, 86,-15,-61,-52,-65, 62, 10,-57,-60,-72,-14,-41; /M: SY='A'; M= 82,-64,-39, 7,-75,-21,-67,-63,-10,-67,-62,-59,-40,-27,-63, -2, 5, -8,-77,-70; /M: SY='D'; M= 39,-72, 59, 31,-78,-63,-58,-48, 30,-50,-66, 7,-65, 23,-35,-33, 12,-30,-83,-68; /M: SY='Y'; M=-71,-82,-70,-72, -4,-77,-38,-57,-31,-54,-50,-39,-83,-60,-61,-66,-65,-62, 12,132; /M: SY='E'; M= -7,-79, 61, 77,-84,-68,-39,-81, -3,-77,-71, 5,-41, 53,-51,-53,-39,-76,-83,-70; /M: SY='A'; M= 67,-66,-60, -9,-73,-58,-63,-55, 25,-41,-60, -6,-66, 33,-30, -3, 20, -1,-78,-67; /M: SY='A'; M= 66,-69, 28, 6,-78,-58,-61,-72, 51,-52,-64,-53,-65, 26,-49, -8,-54,-63,-77,-69; /M: SY='L'; M=-64,-71,-72,-28,-28,-79,-63,-38, 30, 66, 46,-69,-75, 36,-35,-65,-25, -2,-72,-56; /M: SY='A'; M= 81,-65,-62, 2,-74,-55,-67,-28, 21,-61,-60,-37,-65,-24,-58,-14, 3,-15,-77,-69; /M: SY='Q'; M= 14,-77, 1, 32,-80,-67,-55,-45, 32,-69,-61,-15,-65, 92,-17,-33,-25, -6,-77,-65; /M: SY='Y'; M=-71,-81,-69,-72, -5,-77,-38,-58,-15,-55,-51,-13,-82,-60,-60,-65,-65,-63,-30,130; /M: SY='Q'; M=-21,-78, 30, 63,-83,-66,-52,-78, 16,-76,-67, 43,-63, 76,-48,-51, 1,-75,-81,-68; /M: SY='Q'; M= 43,-71, -1, 26,-78,-62,-60,-70, 47,-71,-64,-31,-64, 51,-48, 2, 31,-34,-78,-68; /M: SY='D'; M= 42,-75, 85, 21,-83,-57,-57,-78, 23,-77,-72,-32,-65, 11,-31,-51,-31,-71,-86,-70; /M: SY='K'; M=-64,-74, -9,-31,-57,-76,-62,-46, 65, 52,-46,-61,-62, 10, -5,-35,-31, -6,-72,-11; /M: SY='A'; M= 87,-64,-64,-23,-76,-52,-67,-38, 5,-68,-62,-59,-57,-13,-61, 17,-35,-55,-76,-70; /M: SY='A'; M= 56,-71, -5, 31,-77,-62,-24,-69, 27,-70,-36,-20,-65, 40, 17,-25, 5,-23,-78,-68; /M: SY='Y'; M=-36,-78,-73,-73,-13,-78,-49, 32,-27,-30,-30,-20,-80,-31,-65,-66,-62, 18, 2,112; /M: SY='D'; M= -6,-78, 70, 33,-82,-66,-54,-77, 41,-56,-69, 24,-65, 53,-14,-53,-31,-51,-84,-68; /M: SY='K'; M= 34,-73,-40, 13,-77,-64,-58,-71, 62,-38,-30,-15,-65, 62,-13,-28, 22,-66,-76,-66; /M: SY='A'; M= 65,-69, 26, 39,-73,-36,-62,-44, 5,-59,-64,-20,-65,-52,-59, -7, -3,-20,-77, -4; /M: SY='N'; M=-63,-72,-21,-56,-23,-69,-56,-54, 56, 31, 24, 63,-73, 0, -4,-59,-56, 1,-76,-14; /I: E1=0; IE=-380; DE=-380;» more |
Numerical results [info]
| Total number of hits | 32 in 8 different sequences |
| Number of true positive hits | 32 in 8 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 0 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
| Matrix type [info] | protein_domain |
| Scaling database [info] | reversed |
| Author [info] | CJA_Sigrist |
| Taxonomic range [info] | Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 6 |
| Feature key [info] | REPEAT |
| Feature description [info] | Ag I/II A |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
8 sequences
PAA_STRCG (Q9LBG3), PAC_STRMG (P11657), PAS_STRIT (Q9KW51), SPAA_STRDO (P21979), SPAP_STRMU (P23504), SSPA_STRGC (A8AUS0), SSPB_STRGC (A8AUS1), SSPB_STRGN (P16952)» more
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| PDB [Detailed view] |
4 PDB
2WD6; 6E36; 6TZL; 6UBV |