PROSITE entry PS52013
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General information about the entry
| Entry name [info] | ZF_C6H2 |
| Accession [info] | PS52013 |
| Entry type [info] | MATRIX |
| Date [info] |
03-MAY-2023 CREATED;
03-MAY-2023 DATA UPDATE; 27-MAR-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC52013 |
| Associated ProRule [info] | PRU01357 |
Name and characterization of the entry
| Description [info] | Zinc finger C6H2-type profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=56; /DISJOINT: DEFINITION=PROTECT; N1=6; N2=51; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.6833065; R2=0.0077849; TEXT='-LogE'; /CUT_OFF: LEVEL=0; SCORE=1968; N_SCORE=18.0; MODE=1; TEXT='!'; /CUT_OFF: LEVEL=-1; SCORE=491; N_SCORE=6.5; MODE=1; TEXT='?'; /DEFAULT: M0=-54; D=-150; I=-150; B1=-1000; E1=-1000; MI=-380; MD=-380; IM=-380; DM=-380; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=0; BI=-380; BD=-380; /M: SY='M'; M= -7,-120, -42, 20,-118, 19,-110, 0, 14, -79, 51, -36, 11, 17,-107, 44, 14, -18,-126, -45; /M: SY='H'; M= -8,-122, -36, -48, -72, -25, 55, 13, 0, -38, 10, 30, 3, 23, 47, -24, -13, 11, -20, -25; /M: SY='P'; M= 5,-119,-114, -65, -21, -83, 23, 27, 23, -10, 17, -56, 35, -12, -32, 5, 33, 26,-124, -37; /M: SY='C'; M=-109, 159,-129,-129,-119,-124,-129,-126,-124,-116,-117,-115,-139,-132,-131,-111,-109,-113,-149,-130; /M: SY='S'; M= 32, 21, -12, 27, -59,-109, -23, -39, -63, -31, -35, 2, -59, 47,-108, 54, -8, -11, 49,-110; /M: SY='G'; M= 3,-118, -35,-112, -48, 72,-112,-120, -40, -45,-114, 18,-115,-106, 9, 36, 32, -44,-125,-117; /I: I=-29; MD=-75; /M: SY='P'; M= -8, -28, -23, -1, -54, -48, -47, -40, -75, -23,-132, -44, 63,-131,-140, -24, -52, -78,-151,-141; D=-29; /I: I=-29; MD=-75; /M: SY='G'; M= -63,-149, -3, 5, -55, 32,-132,-154, -74,-153,-145, 20, -30, 15, -74, 6,-130,-151,-153,-143; D=-29; /I: I=-29; MI=0; MD=-75; IM=0; DM=-75; /M: SY='C'; M=-109, 159,-129,-129,-119,-124,-129,-126,-124,-116,-117,-115,-139,-132,-131,-111,-109,-113,-149,-130; /I: I=-28; MD=-70; /M: SY='G'; M= -37,-142, -46,-133,-147, 68,-134, -80, -17, -92,-138, -16, -1,-128,-134, 1, -57,-142,-144,-141; D=-28; /I: I=-28; MI=0; MD=-70; IM=0; DM=-70; /M: SY='K'; M= -76,-141, -69, -12,-141, 12, -19, -56, 59, -67,-129, 12,-132, -6, -32, -46, -59, -25,-143,-132; D=-28; /I: I=-28; DM=-70; /M: SY='N'; M= -3,-122, 11, 38,-124, 6, -41, -75, 21, -78,-113, 50, 43, 34,-103, 3, -32, -2,-128, -52; /M: SY='T'; M= 36, -31, -2, 6,-119, -34, -19, -58, 33, -25,-108, 19, 16, -41,-104, -24, 57, -2,-129,-115; /M: SY='P'; M= 39, -42, -4, 15, -36, -56,-111, -78, -11, -51,-111, 16, 63, -17,-110, 14, 46, -33,-128,-116; /M: SY='S'; M= 52, -36, -51, -50, -35, 18,-110,-116, -6,-117, -1, -36, -58, -48, 8, 67, -6, -33,-125,-114; /I: I=-29; MD=-75; /M: SY='K'; M= -44,-120, -37, -28, -15,-114, -11, -71, 62, -38,-109, 33,-114, 26, 30, 21, 48, -46,-126,-110; D=-29; /I: I=-29; MD=-75; /M: SY='L'; M=-119, -26,-132,-127, 23, -68,-117, -45, -69, 77, 57, -9,-134,-121,-124, -72,-114, -96,-120, -29; D=-29; /I: I=-29; MI=0; MD=-75; IM=0; DM=-75; /M: SY='Q'; M= -9, 27,-106, 10, -45,-117, -53,-124, 46,-122,-113, -42,-117, 90, 16, 13, -16, -57,-127,-115; D=-29; /I: I=-29; DM=-75; /M: SY='C'; M=-109, 159,-129,-129,-119,-124,-129,-126,-124,-116,-117,-115,-139,-132,-131,-111,-109,-113,-149,-130; /M: SY='P'; M=-114,-139,-114,-102,-133,-116,-116,-122, -33,-131,-118,-119, 132, -22,-119,-111,-107,-126,-126,-130; /M: SY='T'; M= -70,-116,-111,-107,-110,-120, -16, 22, 51, 5, -98, -12,-115, -20, -32, -31, 74, 30,-128,-109; /M: SY='C'; M=-109, 159,-129,-129,-119,-124,-129,-126,-124,-116,-117,-115,-139,-132,-131,-111,-109,-113,-149,-130; /M: SY='L'; M= -74,-120, -63, -60, -45,-125, 0, 40, 33, 41, 4, -13,-121, 33, -37, -69, 1, 34,-124,-105; /M: SY='K'; M= -11, -39, 16, 34,-127, -76,-104, -60, 87,-123,-114, 13,-111, 26, -38, -2, -32,-119,-125,-115; /M: SY='L'; M= -16,-120, -34, -9, -9,-124, -18, 9, -4, 67, 14, -9,-123, 36, -20, -68, -67, -95,-118, -15; /M: SY='G'; M= -36,-122, 18, -5,-127, 71,-107,-128, 40, -85,-118, 52, -63, -8, -55, -1,-105, -66,-126,-119; /M: SY='I'; M= -31,-120, -51,-117, -38, -78, -27, 66, 1, 58, -86, -23,-124, -26, 5,-116, -59, -7,-121,-104; /I: I=-20; MI=0; MD=-51; IM=0; DM=-51; /M: SY='P'; M= -4, -25, 12, 9,-148, -73, -37,-141, -5, -89,-136, -60, 57, -34, -25, -21, -19, -82,-150,-140; D=-20; /I: I=-20; DM=-51; /M: SY='P'; M= -19,-124, 16, -17,-121, 23, 10, 9, 9, -86,-111, -4, 50, -50, -35, 15, 2, 16,-130, -53; D=-20; /I: I=-20; DM=-51; /M: SY='S'; M= 33, -39,-108, -52,-123, -27,-111, -19, -39,-121,-115, -15,-115, -13, -53, 92, -31, -63,-130,-117; D=-20; /I: I=-20; DM=-51; /M: SY='Y'; M= -26, -7,-125,-122, 81,-126, 10, -10,-117, -28,-100, -53, -25, -50, -21, -22, -63, -6, -9, 85; D=-20; /I: I=-20; DM=-51; /M: SY='F'; M=-125,-122,-136,-132, 124,-132,-113, -99,-127, -91,-100,-126,-135,-136,-124,-123,-117,-104, -89, 40; D=-20; /I: I=-20; DM=-51; /M: SY='C'; M=-109, 159,-129,-129,-119,-124,-129,-126,-124,-116,-117,-115,-139,-132,-131,-111,-109,-113,-149,-130; /M: SY='S'; M= -41, 6, 17,-105,-123, 25,-108,-121,-106,-124,-117, 10,-112,-101,-112, 90, 45,-114,-132,-116; /M: SY='Q'; M= -70,-131,-101, -16,-135,-115, -97,-122, -28,-119,-106, -26, -7, 132, -30, -51,-108, -59,-121,-110; /M: SY='E'; M= 13,-122, 68, 70,-126, -36,-105,-118, -21, -58,-115, -26, -55, 16,-105, -20, 16, -14,-132,-117; /I: I=-28; MI=0; MD=-70; IM=0; DM=-70; /M: SY='C'; M=-109, 159,-128,-128,-119,-124, -18,-126,-124,-116,-116,-114,-139,-131,-130,-111,-109,-114,-149,-128; /M: SY='F'; M=-122,-120,-133,-128, 124,-130,-111, -97,-124, -61, -98,-123,-133, -24,-121,-120,-115,-102, -87, 41; /M: SY='K'; M= -9,-124, -25, -43,-126,-116,-104,-126, 97,-124,-113, -7,-113, 2, 53, -53, -38,-120,-122,-113; /I: I=-24; MI=0; MD=-60; IM=0; DM=-60; /M: SY='K'; M= 40,-117, -15, 1, -44, -6,-107,-115, 42, -86, 14, 24, -56, -1, 12, 32, 6, -31,-125,-113; /M: SY='N'; M= 19, 10, 2,-106, -13, -65, 29, -61,-104, -77,-111, 87,-118,-102,-109, 56, -31, -20,-128, 8; /M: SY='W'; M=-122, -40,-144,-127, 5,-122,-133,-117,-119,-114,-116,-139,-128,-119,-122,-127,-131,-129, 176, 53; /M: SY='P'; M= 10,-122, -16,-101,-124, 3, -2,-118, 53, -50,-113, 37, 68,-101, -20, 22, -21, -28,-127,-117; /I: I=-45; MD=-115; /M: SY='T'; M= -19,-120, -39, 39, -70, -51, -35, 14, 4, -18,-105, 10,-114, 40, 2, 3, 50, -2,-128,-112; D=-45; /I: I=-45; MI=-115; IM=-115; DM=-115; /M: SY='H'; M=-117,-129,-101,-101,-115,-119, 157,-134,-106,-116,-101, -90,-117, -95,-100,-106,-115,-133,-151, -84; /M: SY='K'; M= -65,-123, -59, -91, -32,-116,-105,-123, 110,-123,-112, 11,-112, -28, -20, -67,-104, -50,-120,-111; /M: SY='A'; M= 34,-117, -37, -1, -46, -70,-109, -13, 29, 22,-101, 10,-116, 22, 7, 23, 1, -10,-124,-110; /M: SY='I'; M= -44,-119,-121, -55, -5,-126, -33, 42, 22, 40, -29, -35,-122, -45, -50, -28, 11, 41, 19, -6; /I: I=-38; MI=0; MD=-97; IM=0; DM=-97; /M: SY='H'; M=-117,-129,-101,-101,-115,-119, 157,-134,-106,-116,-101, -90,-117, -95,-100,-106,-115,-133,-151, -84; /M: SY='K'; M= -1,-121, -18, 23, -27,-116, -37, -70, 63, -17,-107, -26, -5, -12, 0, -2, 30, -23, 17, 16; /M: SY='P'; M= 3,-120, -14, 21, -41, -79, -19, -8, 30, 18, 28, -25, 32, -18, -30, 13, -1, 2,-125,-110; /M: SY='A'; M= 53, -15, 18, 13, -15, -8,-113, -31, -10, -15, 10, -67, 12, 0, -51, -15, -10, -8, 29,-111; /M: SY='K'; M= 10,-121, 4, -3, -59, 4,-108, -49, 60, -21,-109, 25, 14, 5, -11, -22, 15, -19,-125,-114; /M: SY='P'; M= 27,-121, 5, 21, -67, 11,-108, -74, -19, -33, -4, 8, 44, 43, -29, 8, -31, 1,-125, -41; /M: SY='P'; M= 16,-121, -5, 14,-115, 20,-109, -19, 22, -16, 14, 22, 26, -21, -18, -50, 13, -4, 0, -9; /M: SY='N'; M= 14, -38, 5, 18, -32, -57,-106, -41, 12, -2, 12, 43, -38, 15, -3, 10, 20, -17, -13, -19; /I: E1=0; IE=-380; DE=-380;» more |
Numerical results [info]
| Total number of hits | 13 in 13 different sequences |
| Number of true positive hits | 13 in 13 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 0 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
| Matrix type [info] | protein_domain |
| Scaling database [info] | reversed |
| Author [info] | CJA_Sigrist |
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 1 |
| Feature key [info] | ZN_FING |
| Feature description [info] | C6H2-type |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
13 sequences
MAP11_DANRE (Q4QRK0), MAP11_DICDI (Q54WU3), MAP11_HUMAN (P53582), MAP11_MOUSE (Q8BP48), MAP1A_ARATH (Q9SLN5), MAP1B_PLAF7 (Q8IJP2), MAP1_BOVIN (A6QLA4), MAP1_CHICK (Q5ZIM5), MAP1_PONAB (Q5RBF3), MAP1_SCHPO (O59730), MAP1_XENLA (Q7ZWV9), MAP1_XENTR (Q5I0A0), MAP1_YEAST (Q01662)» more
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| PDB [Detailed view] |
5 PDB
4IU6; 7SEK; 8BQD; 8BQX; 8P2K |