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PROSITE entry PS52037


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General information about the entry

Entry name [info] ZF_RG_C
Accession [info] PS52037
Entry type [info] MATRIX
Date [info] 24-JAN-2024 CREATED;
24-JAN-2024 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC52036
Associated ProRule [info] PRU01381

Name and characterization of the entry

Description [info] Zinc finger reverse gyrase C-terminal-type profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=28;
/DISJOINT: DEFINITION=PROTECT; N1=3; N2=26;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.2025275; R2=0.0117856; TEXT='-LogE';
/CUT_OFF: LEVEL=0; SCORE=1426; N_SCORE=19.0; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=365; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-107; D=-150; I=-150; B1=-1000; E1=-1000; MI=-380; MD=-380; IM=-380; DM=-380;
...
                A    C    D    E    F    G    H    I    K    L    M    N    P    Q    R    S    T    V    W    Y
/I:         B1=0; BI=-380; BD=-380;
/M: SY='I';  M=-214,-224,-234,-230,-195,-238,-229, 106,-226,  38,-182,-226,-225,-222, -89,-223,-208, -48,-222,-204;
/M: SY='K';  M=-109,-225,-206,-195,-218,   0,-205,-122, 104,-223,-213, -84,-214,-192,  21, -55, -40,-106,-216,  29;
/M: SY='R';  M=-214,-229,-209,-196,-225,-223,-223,-230,  73,-224,-213,-201,-219,-188, 108,-108,-211,-224,-223,-212;
/M: SY='C';  M=-209, 161,-229,-229,-220,-225,-229,-227,-225,-217,-217,-216,-240,-233,-232,-212,-210,-214,-250,-230;
/M: SY='R';  M= -30,-222, -98,   9, -88,-128,-207,  -1,  25,  34,  20,  -9, -18, -11,  58,  17, -76, -37,-221,  -8;
/M: SY='N';  M= -51,-220,  34,  25,-224,-128,-201, -97,  53, -97,-215,  76,-214, -35,  15,  34, -40, -24,-232,-216;
/I:         I=-42; MI=0; MD=-106; IM=0; DM=-106;
/M: SY='C';  M=-215, 154, -91,-233,-225,-230, 134,-232, -64,-223,-223,-220,-245,-237,-235,-217,-215,-220,-254,-235;
/I:         I=-42; MD=-106;
/M: SY='G';  M=-199,-223,-119, -84,-134,  99,-211,-233,   2,-110,-220,  50,-216, -91, -34, -73,-210,-229,-223,-122; D=-42;
/I:         I=-42; MI=-106; MD=-106; IM=-106; DM=-106;
/M: SY='H';  M= -22,-225, -96,  44, -79,-218,  99,-220,  19,-214,-206, -27,-216,-194,  35, -51,   9,-103,-212,  79; D=-42;
/I:         I=-42; DM=-106;
/M: SY='Q';  M=-107,-227, -37,-185,-230,-214,-198,-152,-191,-118,-148, -89,-213, 133,-192, -28,  29, -34,-222,-209;
/M: SY='F';  M=-217,-219,-232,-228, 116,-230,   0,   9,-224, -97,-195,-117,-230,-229,-222,-219,-201,  27,  12,  18;
/M: SY='T';  M= -15,-211,-212,-212, -67,-215,-218, -77,-210,-125,-202,-203, -27,-211,-216,  32,  95,  62,-233,-211;
/M: SY='D';  M=-106,-224,  75,  51,-226,  36, -32, -73,  18, -78, -35, -45,-212,  17,-103,  20, -61, -90,-229, -39;
/M: SY='E';  M= -87,-223,  47,  55,  12,   4,  -8, -49, -40, -28,-142, -34,   9, -42, -36,  35, -11, -63,  10,  23;
/M: SY='E';  M= -39,-221,  35,  53, -25, -24, -78, -11, -10,  -5, -65, -12, -45, -44,   2,  21, -13,  17,-223,  11;
/I:         I=-17; MD=-42;
/M: SY='D';  M=-100,-143,  63,  36,-242, -66, -77,-141, -21,-113, -93,  17, -29,  -2,-109,  19, -68, -60,-249, -58; D=-17;
/I:         I=-17; MI=0; MD=-42; IM=0; DM=-42;
/M: SY='K';  M= -15,-220,-150,  31, -15,-216, -31, -44,  67, -71,-131, -50, -91,  10,  21,  21,  24,  21,-223,-101;
/M: SY='C';  M=-208, 162,-228,-228,-219,-224,-228,-225,-224,-216,-216,-214,-239,-232,-231,-211,-208,-213,-248,-229;
/M: SY='P';  M=-213,-237,-214,-203,-231,-216,-114, -58,-106,-129,-216,-121, 133,-213, -94, -84,-101, -62,-227,-229;
/M: SY='Y';  M= -97,-224,-209, -97, -40,-219,-199,  21,  51, -67, -67,  40,-221,-101,  61, -22, -97, -16, -57,  82;
/M: SY='C';  M=-209, 161, -48,-227,-219,-224,-228,-226,-224,-216, -87,-214,-239,-231,-230,-211,-209,-214,-249,-229;
/M: SY='G';  M=-115,-223, -74, -97,-228, 101,   8,-233,   3,-229,  -5, -26,-141,-209, -48, -21,-212,-228,-223,-221;
/M: SY='S';  M=-120,-213, -98,-114, -90,  22, -76,-221,-146,-224,-217, -42,-212,-199,-193, 107,  15,-106,-229,-101;
/M: SY='T';  M= -53,-220,  14,  54,-222, -65,-206, -62,  31, -73,-102,  -8, -21,  -7,  27,  14,  62, -50,-229, -83;
/M: SY='N';  M= -61,-221,  46,  32, -51,-216, -73,  -4,   1,   5, -47,  65,-120,   0,   4, -57, -44,  25,-230, -77;
/M: SY='I';  M=-127,-221, -81,  19,  32,-232,-222,  79,-101, -13,-190,-221,-223, -88,-221,-127,-115,  57,-216,  17;
/M: SY='R';  M= -81,-221,  38, -40,   7,-221, -23,  17, -18,  12, -32, -34,-220,  -8,  39,  -1,  22,   9, -96,  38;
/I:         I=-38; MI=0; MD=-97; IM=0; DM=-97;
/M: SY='D';  M=-110,-221, 100,-188,-229,-207,-119,-227,  21,-228,-223, -32,-213,-199,-145,  70, -11,-222,-239,-216;
/I:         I=-45; E1=0; MI=0; IE=0; DE=-115;
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_05 which contains 572'214 sequence entries.


Total number of hits 18 in 18 different sequences
Number of true positive hits 18 in 18 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Archaea, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Feature key [info] ZN_FING
Feature description [info] RG C-terminal-type
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
18 sequences

RGYR1_AERPE (Q9YCB6), RGYR1_SACS2 (Q97ZZ8), RGYR1_SULAC (Q08582), 
RGYR1_SULTO (Q971T7), RGYR2_AERPE (Q9YC75), RGYR2_SACS2 (Q97ZF5), 
RGYR2_SULAC (P0DW67), RGYR2_SULTO (Q975P6), RGYRA_NANEQ (Q74MA4), 
RGYRB_METKA (F1SVH1), RGYR_ARCFU  (O29238), RGYR_CALS4  (Q8R979), 
RGYR_PYRAB  (Q9UZ86), RGYR_PYRFU  (P95479), RGYR_PYRHO  (O58530), 
RGYR_SACSH  (P74759), RGYR_THEKO  (Q6F598), RGYR_THEMA  (O51934)
» more

PDB
[Detailed view]
10 PDB

1GKU; 1GL9; 4DDT; 4DDU; 4DDV; 4DDW; 4DDX; 7FSE; 7FSF; 8OFB