PROSITE entry PS52046
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PURL: https://purl.expasy.org/prosite/signature/PS52046
Direct ScanProsite submission
General information about the entry
| Entry name [info] | ZF_C2HC_NPR |
| Accession [info] | PS52046 |
| Entry type [info] | MATRIX |
| Date [info] |
27-NOV-2024 CREATED;
27-NOV-2024 DATA UPDATE; 27-NOV-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC52046 |
| Associated ProRule [info] | PRU01391 |
Name and characterization of the entry
| Description [info] | Zinc finger C2HC NPR-type profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=15; /DISJOINT: DEFINITION=PROTECT; N1=2; N2=14; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.8376615; R2=0.0060848; TEXT='-LogE'; /CUT_OFF: LEVEL=0; SCORE=931; N_SCORE=8.5; MODE=1; TEXT='!'; /CUT_OFF: LEVEL=-1; SCORE=602; N_SCORE=6.5; MODE=1; TEXT='?'; /DEFAULT: M0=-59; D=-150; I=-150; B1=-1000; E1=-1000; MI=-380; MD=-380; IM=-380; DM=-380; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=0; BI=-380; BD=-380; /M: SY='V'; M= 39,-115,-122,-115,-108, -54,-120, -83,-105, -8, -96,-117,-123,-111, 50, -44,-101, 83,-129,-111; /M: SY='C'; M= 22, 87,-114,-110, -67,-108,-115,-113,-111,-117, -39,-106, 63,-109, -55, 72, -37, -6, 0,-116; /M: SY='T'; M= -1,-116, 4, -10, -44, 8,-111, 14,-106, -42, -54, 47,-115, -24, -49, 2, 57, 23,-130,-113; /M: SY='C'; M=-109, 159,-129,-129,-119,-124,-129,-126,-124,-116,-117,-115,-139,-132,-131,-111,-109,-113,-149,-130; /I: I=-45; MI=0; MD=-115; IM=0; DM=-115; /M: SY='V'; M= 21,-116,-160, -49,-108, 29,-121, -14,-113, -2, 8,-113,-121,-113, 1, -14, -72, 73,-128,-112; /M: SY='D'; M= -25,-127, 106, 48,-129,-114, 29,-129, -99, -73,-122, -29,-113, 21,-106,-102,-106,-126,-138, -23; /I: I=-38; MI=0; MD=-97; IM=0; DM=-97; /M: SY='D'; M= -70,-126, 75, 47,-125, -26,-104, -33, -40, -34,-115, -18, -3, -95, 59, 0, -31,-118,-132,-129; /M: SY='G'; M= 8,-121, 44, 25,-120, 57,-110, -98,-106, -29, -1, -10,-115, -12, -20, -7, -4, -1,-127, -45; /I: I=-45; MI=0; MD=-115; IM=0; DM=-115; /M: SY='C'; M=-109, 159,-129,-129,-119,-124,-129,-126,-124,-116,-117,-115,-139,-132,-131,-111,-109,-113,-149,-130; /M: SY='W'; M= 28, 37, -20, -61, -52, 0, 11, -49,-109, -49,-111, -50, 29, -13, -59, 23, 4, -67, 119,-102; /M: SY='H'; M=-117,-129,-101,-101,-115,-119, 157,-134,-106,-116,-101, -90,-117, -95,-100,-106,-115,-133,-151, -84; /M: SY='D'; M= -38,-119, 75, 32, -32, -39, -41, -70,-104, -51, 4, -26,-114, -1,-111, -99, 54, 33,-134,-112; /M: SY='A'; M= 73, -9,-110,-109,-120, 23, 70,-119,-107,-118,-110, -23,-116,-104, -10, 29, -41, -58,-126, -20; /M: SY='C'; M=-109, 159,-129,-129,-119,-124,-129,-126,-124,-116,-117,-115,-139,-132,-131,-111,-109,-113,-149,-130; /M: SY='R'; M= -57, -25,-111,-104,-118, -15, 15,-121, -16, -77, -32, -28, -1, -97, 91, -5, 40, -69, 61,-108; /I: E1=0; IE=-380; DE=-380;» more |
Numerical results [info]
| Total number of hits | 20 in 20 different sequences |
| Number of true positive hits | 20 in 20 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 0 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 1 |
| Matrix type [info] | protein_domain |
| Scaling database [info] | reversed |
| Author [info] | CJA_Sigrist |
| Feature key [info] | ZN_FING |
| Feature description [info] | C2HC NPR-type |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
20 sequences
COCH_PEA(G8GTN7), NBCL_LOTJA (G3LSH3), NBCL_LUPAN (A0A0K0PU92), NBCL_LUPLU (S4VGD0), NH51_ORYSJ (Q2RAQ5), NH52_ORYSJ (Q2QXZ2), NOOT1_MEDTR (Q2HW56), NOOT2_MEDTR (A0A072VIM5), NPR1_ARATH (P93002), NPR1_MALHU (E7BQV0), NPR1_ORYSI (Q5D0W8), NPR1_ORYSJ (Q9FDY4), NPR2_ARATH (Q9SZI3), NPR2_ORYSJ (Q0JJ01), NPR3_ARATH (Q8L746), NPR3_ORYSJ (Q75HA6), NPR4_ARATH (Q5ICL9), NPR5_ARATH (Q9ZVC2), NPR5_ORYSJ (A2CIR7), NPR6_ARATH (Q9M1I7)» more
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| PDB [Detailed view] |
4 PDB
7MK2; 7MK3; 7TAC; 7TAD |