PROSITE entry PS00853
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General information about the entry
| Entry name [info] | BETA_ELIM_LYASE |
| Accession [info] | PS00853 |
| Entry type [info] | PATTERN |
| Date [info] |
01-OCT-1993 CREATED;
01-DEC-2004 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00667 |
Name and characterization of the entry
| Description [info] | Beta-eliminating lyases pyridoxal-phosphate attachment site. |
| Pattern [info] |
[YV]-x-D-x(3)-M-S-[GA]-K-K-D-x-[LIVMF]-[LIVMAG]-x-[LIVM]-G-G. |
Numerical results [info]
| Total number of hits | 59 in 59 different sequences |
| Number of true positive hits | 59 in 59 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 9 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 86.76 % |
Comments [info]
| Taxonomic range [info] | Archaea, Eukaryotes, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Site [info] | pyridoxal_phosphate at position 9 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
59 sequences
BELY_TRIV3 (A2EYC4), TNAA1_SYMTH (P31014), TNAA2_SYMTH (P31015), TNAA_AERPE (Q9YCI2), TNAA_CALS4 (Q8R9K5), TNAA_CHRVO (Q7NYV9), TNAA_CITK8 (A8AKE2), TNAA_CLOTE (Q894M8), TNAA_ECO24 (A7ZTR3), TNAA_ECO27 (B7UMH5), TNAA_ECO45 (B7MGC9), TNAA_ECO55 (B7L853), TNAA_ECO57 (Q8XB34), TNAA_ECO5E (B5YXB2), TNAA_ECO7I (B7NR10), TNAA_ECO81 (B7N212), TNAA_ECO8A (B7M560), TNAA_ECOBW (C4ZYY6), TNAA_ECODH (B1X9T7), TNAA_ECOHS (A8A6H0), TNAA_ECOL5 (Q0TB00), TNAA_ECOL6 (Q8FBV2), TNAA_ECOLC (B1IX30), TNAA_ECOLI (P0A853), TNAA_ECOLU (B7NF25), TNAA_ECOSE (B6I3U1), TNAA_ECOSM (B1LL35), TNAA_ESCF3 (B7LK50), TNAA_HAEI8 (Q4QML4), TNAA_HAEIF (O07674), TNAA_HALS3 (B0R7Q6), TNAA_HALSA (Q9HMV2), TNAA_HISS1 (Q0I3R5), TNAA_HISS2 (B0UTZ3), TNAA_KLEAE (Q59342), TNAA_PASMU (Q9CL27), TNAA_PHOLL (Q7N8C9), TNAA_PROIN (Q9ZNA8), TNAA_PROVU (P28796), TNAA_RHOCA (O30971), TNAA_SHIB3 (B2TUR7), TNAA_SHIF8 (Q0SYP7), TNAA_SHIFL (P0A854), TNAA_VIBC3 (A5EYI0), TNAA_VIBCH (Q9KN05), TNAA_VIBCM (C3LUI5), TNAA_VIBPA (Q87JQ6), TNAA_VIBVU (Q8D5Q4), TNAA_VIBVY (Q7MCR1), TNAA_YERE8 (A1JJH3), TPL_CITFR (P31013), TPL_CITIN (P31012), TPL_CLOTE (Q897C2), TPL_ENTAG (P31011), TPL_FUSNN (Q8RHM6), TPL_NOSP7 (B2J908), TPL_PASMU (Q9CMK9), TPL_SYMS1 (O08501), TPL_SYMTH (Q08897)» more
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| UniProtKB/Swiss-Prot False negative sequences |
9 sequences
TNAA_AERHH (A0KJP3), TNAA_AERS4 (A4SNA7), TNAA_HYPNA (Q0C406), TNAA_NITV2 (Q729Z3), TNAA_NITV4 (A1VC86), TNAA_SALRD (Q2S1V4), TNAA_SHESH (A8G097), TPL_INTC7 (E6SFG5), TPL_LACSW (D9R201)» more |
| PDB [Detailed view] |
42 PDB
1AX4; 1C7G; 1TPL; 2C44; 2EZ1; 2EZ2; 2OQX; 2TPL; 2V0Y; 2V1P; 2VLF; 2VLH; 2YCN; 2YCP; 2YCT; 2YHK; 4UP2; 4W1Y; 4W4H; 5D8G; 5W19; 5W1B; 6DUR; 6DVX; 6DXV; 6DYT; 6DZ5; 6ECG; 6MLS; 6MME; 6MO3; 6MPD; 6MQQ; 6NV8; 7FJK; 7TCS; 7TDL; 8V2K; 8V4A; 8V6P; 8V9P; 9BNJ » more |