We are deeply saddened by the passing of Amos Bairoch (1957–2025), the creator of PROSITE. We wish to dedicate our latest paper, published shortly before his death, to him. He will always be a source of inspiration to us.
Our deepest condolences go out to his family and friends, and to all those who had the privilege of working with him. Rest in peace, Amos. Your work will live on long after you are gone.
Our deepest condolences go out to his family and friends, and to all those who had the privilege of working with him. Rest in peace, Amos. Your work will live on long after you are gone.
PROSITE entry PS01087
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PURL: https://purl.expasy.org/prosite/signature/PS01087
Direct ScanProsite submission
General information about the entry
| Entry name [info] | RADICAL_ACTIVATING |
| Accession [info] | PS01087 |
| Entry type [info] | PATTERN |
| Date [info] |
01-NOV-1995 CREATED;
01-DEC-2004 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00834 |
Name and characterization of the entry
| Description [info] | Radical activating enzymes signature. |
| Pattern [info] |
[GVPS]-x-[GKS]-x-[KRS]-x(3)-[FL]-x(2)-G-x(0,1)-C-x(3)-C-x(2)-C-x-[NLF]. |
Numerical results [info]
| Total number of hits | 51 in 51 different sequences |
| Number of true positive hits | 51 in 51 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 0 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
| Taxonomic range [info] | Archaea, Bacteriophages, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Site [info] | iron_sulfur at position 11 |
| Site [info] | iron_sulfur at position 13 |
| Site [info] | iron_sulfur at position 15 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
51 sequences
BSSD_THAAR (O87941), CUTD_OLEA2 (Q30W71), HPDA_CLOD6 (Q18CP3), HPDA_CLODC (C9XIS7), HPDA_CLODI (Q84F14), HPDA_CLODR (C9YHW3), HPDA_CLOSL (Q38HX2), HPFH_KLEOX (A0A318FEA4), HPSH_BILW3 (E5Y7I3), HYPDA_CLODI (A0A069AMK2), IADAE_TRASO (A0A124EH39), ISLB_BILW3 (E5Y377), ISLB_DESDA (B8J0R0), ISLB_NITV2 (Q727N0), ISLB_OLEA2 (Q312S3), NRDG_BPT4 (P07075), NRDG_ECO57 (P0A9N9), NRDG_ECOLI (P0A9N8), NRDG_HAEIN (P45080), NRDG_PASMU (Q9CM94), NRDG_SALTI (Q8Z138), NRDG_SALTY (Q9L645), NRDG_VIBCH (Q9KM76), PFLA_CLOPA (Q46267), PFLA_ECO57 (P0A9N6), PFLA_ECOL6 (P0A9N5), PFLA_ECOLI (P0A9N4), PFLA_HAEIN (P43751), PFLA_LISIN (P0A443), PFLA_LISMF (Q71ZR3), PFLA_LISMO (P0A442), PFLA_SHIFL (P0A9N7), PFLA_STAA3 (Q2FK43), PFLA_STAA8 (Q2G1D7), PFLA_STAAB (Q2YV52), PFLA_STAAC (Q5HJF3), PFLA_STAAM (Q99WZ6), PFLA_STAAN (Q7A7X5), PFLA_STAAR (Q6GK89), PFLA_STAAS (Q6GCP9), PFLA_STAAW (Q7A1W8), PFLA_STAEQ (Q5HKI0), PFLA_STAES (Q8CTX5), PFLA_STRMU (O68575), PFLC_ECOLI (P32675), PFLE_ECOLI (P75794), Y021_METJA (Q60332), Y1227_METJA (Q58624), Y1632_METJA (Q59026), Y520_HAEIN (P44743), YJJW_ECOLI (P39409)» more
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| PDB [Detailed view] |
5 PDB
pdb_00003c8f; pdb_00003cb8; pdb_00008fo0; pdb_00008fol; pdb_00008fsi |