PROSITE entry PS01090

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General information about the entry

Entry name [info]	TATD_2
Accession [info]	PS01090
Entry type [info]	PATTERN
Date [info]	01-NOV-1995 CREATED; 01-NOV-1995 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC00836

Name and characterization of the entry

Description [info]	TatD deoxyribonuclease family signature 2.
Pattern [info]	P-[LIVM]-x-[LIVM]-H-x-R-x-[TA]-x-[DE].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_04 which contains 571'864 sequence entries.

Total number of hits	26 in 26 different sequences
Number of true positive hits	22 in 22 different sequences
Number of 'unknown' hits	0
Number of false positive hits	4 in 4 different sequences
Number of false negative sequences	37
Number of 'partial' sequences	1

Precision (true positives / (true positives + false positives))	84.62 %
Recall (true positives / (true positives + false negatives))	37.29 %

Comments [info]

Taxonomic range [info]	Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info]	1
Version [info]	1

Cross-references [info]

UniProtKB/Swiss-Prot True positive sequences	22 sequences TATD2_HUMAN (Q93075), TATD_ECOLI (P27859), TATD_ENT38 (A4WFX9), TATD_ENTLS (E3G381), TATD_ERWAE (D4ICL5), TATD_ERWBE (D8MKW4), TATD_ERWT9 (B2VG45), TATD_ESCF3 (B7LTZ5), TATD_KLEP3 (B5XYH5), TATD_PANAM (D4GGR2), TATD_PANSA (E6WHK1), TATD_RAHSY (E8XYF5), TATD_SALTY (Q9L6M2), TATD_SHIF8 (Q0SZ31), TATD_YERPY (B1JP69), Y017_UREPA (Q9PRC8), Y081_HAEIN (P44500), Y355_BUCAI (P57436), Y454_HAEIN (P44718), YABD_BACSU (P37545), YBF5_YEAST (P34220), YJJV_ECOLI (P39408) » more Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits: [Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format] Retrieve the sequence logo from the alignment
UniProtKB/Swiss-Prot False negative sequences	37 sequences DTD3_SYNY3 (P73335), TAT3A_XENLA (Q05AV0), TATD1_BOVIN (Q148G4), TATD1_DANRE (Q6GML7), TATD1_ENCCU (Q8SW70), TATD1_ENTBH (B7XJI2), TATD1_HUMAN (Q6P1N9), TATD1_MOUSE (Q6P8M1), TATD1_VAIC1 (C4VAS3), TATD3_BOVIN (A1A4M4), TATD3_DANRE (Q503T5), TATD3_HUMAN (Q17R31), TATD3_MOUSE (Q3U1C6), TATD_CITK8 (A8ACY8), TATD_CITRI (D2TUZ4), TATD_CROS8 (A7MQN1), TATD_CROTZ (C9XTA5), TATD_DICD3 (E0SLH6), TATD_EDWTE (D0Z9R0), TATD_MUSP7 (C6C4V4), TATD_MYCTU (O08343), TATD_PANVC (E1SKR8), TATD_PECAS (Q6DAQ1), TATD_PECCP (C6DI71), TATD_PECPW (D0KC77), TATD_SERP5 (A8G8C4), Y009_MYCGE (P47255), Y009_MYCPN (P78005), Y1582_METJA (Q58977), Y1664_HAEIN (P45305), Y325_BUCBP (Q89AG7), Y343_BUCAP (Q8K9J1), Y761_METJA (Q58171), YCFH_ECO57 (P0AFQ9), YCFH_ECOL6 (P0AFQ8), YCFH_ECOLI (P0AFQ7), YNF8_SCHPO (Q9UUF1) » more
UniProtKB/Swiss-Prot 'Partial' sequences	1 sequence YMES_GEOSE (P23918)
UniProtKB/Swiss-Prot False positive sequences	4 sequences GLGE_CORGL (Q8NR39), PKHG7_HUMAN (Q6ZR37), TOF1_EMENI (Q5AXH3), TOF1_PHANO (Q0UJF3) » more
PDB [Detailed view]	4 PDB 1XWY; 1ZZM; 4P5U; 4PE8