We are deeply saddened by the passing of Amos Bairoch (1957–2025), the creator of PROSITE. We wish to dedicate our latest paper, published shortly before his death, to him. He will always be a source of inspiration to us.
Our deepest condolences go out to his family and friends, and to all those who had the privilege of working with him. Rest in peace, Amos. Your work will live on long after you are gone.
Our deepest condolences go out to his family and friends, and to all those who had the privilege of working with him. Rest in peace, Amos. Your work will live on long after you are gone.
PROSITE entry PS01229
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PURL: https://purl.expasy.org/prosite/signature/PS01229
Direct ScanProsite submission
General information about the entry
| Entry name [info] | COF_2 |
| Accession [info] | PS01229 |
| Entry type [info] | PATTERN |
| Date [info] |
01-NOV-1997 CREATED;
01-NOV-1997 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC00944 |
Name and characterization of the entry
| Description [info] | Hypothetical cof family signature 2. |
| Pattern [info] |
[LIVMFC]-G-D-[GSANQ]-x-N-D-x(3)-[LIMFY]-x(2)-[AV]-x(2)-[GSCP]-x(2)- [LMP]-x(2)-[GAS]. |
Numerical results [info]
| Total number of hits | 142 in 142 different sequences |
| Number of true positive hits | 84 in 84 different sequences |
| Number of 'unknown' hits | 1 |
| Number of false positive hits | 57 in 57 different sequences |
| Number of false negative sequences | 7 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 59.57 % |
| Recall (true positives / (true positives + false negatives)) | 92.31 % |
Comments [info]
| Taxonomic range [info] | Eukaryotes, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
84 sequences
COF_CITK8 (A8AK07), COF_CROS8 (A7MFJ6), COF_ECO24 (A7ZIK4), COF_ECO27 (B7UJR9), COF_ECO45 (B7MDA5), COF_ECO55 (B7L683), COF_ECO57 (Q8XE50), COF_ECO5E (B5Z3V4), COF_ECO7I (B7NJ48), COF_ECO81 (B7MQG2), COF_ECO8A (B7M3T9), COF_ECOBW (C4ZTK3), COF_ECODH (B1XFN4), COF_ECOHS (A7ZXA4), COF_ECOK1 (A1A8B5), COF_ECOL5 (Q0TKJ5), COF_ECOL6 (Q8FKA2), COF_ECOLC (B1IZE7), COF_ECOLI (P46891), COF_ECOLU (B7N900), COF_ECOSE (B6HZQ3), COF_ECOSM (B1LJK3), COF_ECOUT (Q1RF89), COF_ENT38 (A4W7B7), COF_ESCF3 (B7LMD3), COF_KLEP3 (B5Y0T3), COF_KLEP7 (A6T5I9), COF_SALA4 (B5EXJ7), COF_SALAR (A9MM14), COF_SALCH (Q57SA6), COF_SALDC (B5FKW1), COF_SALEP (B5QU47), COF_SALG2 (B5R6V8), COF_SALHS (B4T9F2), COF_SALNS (B4SWV0), COF_SALPA (Q5PFM4), COF_SALPB (A9MWC0), COF_SALPK (B5BD74), COF_SALSV (B4TMD5), COF_SALTI (Q8Z8U7), COF_SALTY (Q8ZRB6), COF_SERP5 (A8GAR8), COF_SHIB3 (B2U4Q1), COF_SHIBS (Q325F5), COF_SHIDS (Q32JB1), COF_SHIF8 (Q0T7D7), COF_SHIFL (Q83M49), COF_SHISS (Q3Z4V2), COF_YERE8 (A1JNL2), COF_YERP3 (A7FLB5), COF_YERPA (Q1C4L7), COF_YERPB (B2K6W6), COF_YERPE (Q7CK25), COF_YERPG (A9QZP3), COF_YERPN (Q1CL56), COF_YERPP (A4TPD3), COF_YERPS (Q66DS5), COF_YERPY (B1JHR2), NTDB_BACSU (O07565), SUPH_ECOLI (P75792), Y003_HAEIN (P44447), Y125_MYCGE (P47371), Y263_MYCGE (P47505), Y264_MYCPN (P75511), Y265_MYCGE (P47507), Y381_MYCPN (P75401), Y383_MYCPN (P75399), Y533_STRP6 (Q5XD45), Y597_HAEIN (P44771), Y732_MYCCT (P53661), YBEY_ARATH (Q8L5Z4), YBHA_ECOLI (P21829), YBJI_ECOLI (P75809), YCSE_BACSU (P42962), YIDA_ECOL6 (P0A8Y6), YIDA_ECOLI (P0A8Y5), YIDA_SHIFL (P0A8Y7), YIGL_ECO57 (Q8X8L6), YIGL_ECOLI (P27848), YKRA_BACSU (Q45494), YPDA_GEOSE (P21878), YUPP_METHO (P43051), YWPJ_BACSU (P94592), YXEH_BACSU (P54947)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
7 sequences
BPPI_STRP6 (Q5XAQ1), Y028_BUCAI (P57140), Y029_BUCAP (Q8KA73), Y030_BUCBP (Q89B25), Y427_MYCPN (P75360), YITU_BACSU (P70947), YWTE_BACSU (P96741)» more |
| UniProtKB/Swiss-Prot 'Unknown' sequences |
1 sequence
SPFA_ASPFU (Q4WYP6) |
| UniProtKB/Swiss-Prot False positive sequences |
57 sequences
AT132_HUMAN (Q9NQ11), AT132_MOUSE (Q9CTG6), ATC4_SCHPO (O14072), ATC9_SCHPO (O74431), ATSY_SYNE7 (P37385), ATSY_SYNP6 (P07893), ATU2_SCHPO (O59666), CADA_LISMN (Q60048), CATP5_CAEEL (Q21286), COPA_ECO57 (Q8XD24), COPA_ECOLI (Q59385), COPA_ENTHA (P32113), COPA_SALTI (Q8Z8S4), COPA_SALTY (Q8ZR95), COPA_STAHJ (Q4L970), COPA_VIBCH (Q9KPZ7), COPA_YERPE (Q8ZCA7), CTA5_SCHPO (O14022), CTPB_MYCLE (P46840), CTPC_MYCBO (P0A503), CTPC_MYCLE (Q9CCL1), CTPC_MYCMM (B2HEM2), CTPC_MYCTO (P9WPT4), CTPC_MYCTU (P9WPT5), CTPD_MYCS2 (A0R3A7), CTPJ_MYCTO (P9WPT6), CTPJ_MYCTU (P9WPT7), FIXI_BRADU (Q59207), FIXI_RHILV (O33533), FIXI_RHIME (P18398), HMA2_ARATH (Q9SZW4), HMA2_ORYSJ (A3BF39), HMA3B_ARATH (P0CW78), HMA3_ORYSJ (Q8H384), HMA4_ARATH (O64474), HMCT_HELFE (Q9RQB4), HMCT_HELPJ (Q9ZL53), HMCT_HELPY (Q59465), KDPB_AGRFC (Q8U9D9), KDPB_CAUVC (Q9A7X7), KDPB_DEIRA (Q9RZP0), KDPB_PSEAE (P57698), KDPB_RHILO (Q98GX6), KDPB_RHIME (Q92XJ0), KDPB_THEAC (P57700), KDPB_THEVO (Q97BF6), KDPB_XANAC (Q8PPC9), KDPB_XANCP (Q8PCM1), PGP_AERPE (Q9YE03), PGP_METKA (Q8TYT9), SPF1_YEAST (P39986), Y290_HAEIN (P77868), YH2M_CAEEL (Q27533), YPK9_YEAST (Q12697), ZNTA_ECOLI (P37617), ZNTA_SHISS (Q3YW59), ZOSA_BACSU (O31688)» more |
| PDB [Detailed view] |
6 PDB
pdb_00001nrw; pdb_00001rlm; pdb_00001rlo; pdb_00001rlt; pdb_00002hf2; pdb_00003gyg |