PROSITE entry PS50879

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PURL: https://purl.expasy.org/prosite/signature/PS50879

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General information about the entry

Entry name [info]	RNASE_H_1
Accession [info]	PS50879
Entry type [info]	MATRIX
Date [info]	01-SEP-2004 CREATED; 29-SEP-2021 DATA UPDATE; 29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info]	PDOC50879
Associated ProRule [info]	PRU00408

Name and characterization of the entry

Description [info]

RNase H type-1 domain profile.

Matrix / Profile [info]

/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=144;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=139;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.5218980; R2=0.0075296; TEXT='-LogE';
/CUT_OFF: LEVEL=0; SCORE=927; N_SCORE=9.5; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=529; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-31; D=-150; I=-150; B1=-1000; E1=-1000; MI=-380; MD=-380; IM=-380; DM=-380;

...

                A    C    D    E    F    G    H    I    K    L    M    N    P    Q    R    S    T    V    W    Y
/I:         B1=0; BI=-380; BD=-380;
/M: SY='M';  M= -42,  -9, -50, -15, -64, -50, -49,  37, -51,  22,  58, -32,  27, -43, -42,   6, -22, -29, -83, -40;
/M: SY='M';  M= -13, -77,  15,  16, -61, -26, -43, -32, -10, -25,  52,  15,  40,  21,  -8,   0,  -8,  -5, -82, -49;
/M: SY='K';  M=  -4, -75,  12,   8, -26,  19, -10, -66,  51, -64,  11,  31,  12,  -9, -29, -19,   3, -39, -78, -33;
/M: SY='A';  M=  32, -74,   8,  31, -21,   0,  -8, -14,  13, -39,   3, -39, -10,  23,  15, -12, -17, -21,  -1, -44;
/M: SY='V';  M= -41, -74,  -7,  20, -41, -55,   7,  45, -66,   2,   8, -67,  30, -28, -62, -42,  -4,  51, -79, -23;
/M: SY='T';  M= -26,  53, -25,  32, -45, -74, -15,  15, -20, -16, -46, -29, -68, -42, -38, -38,  63,  33, -82, -29;
/M: SY='I';  M=   2, -74, -81, -52,  20, -54, -73,  64, -74,  14, -10, -76, -77, -71, -75, -68, -60,  37,  61,  40;
/M: SY='Y';  M= -35, -44, -74, -48,  75, -77,  15, -51, -68, -50, -51, -40, -82, -67, -66, -67, -66, -60,  38, 111;
/M: SY='T';  M= -14,  14, -40, -35, -12, -68, -69, -26, -61, -59, -58, -52, -64, -63, -67,  20,  94,  24, -84, -46;
/M: SY='D';  M= -66, -80, 116, -32, -87, -64, -54, -85, -39, -84, -82, -36, -67, -54, -63,  -5, -56, -68,-101, -70;
/M: SY='G';  M= -23, -76, -65, -75, -82, 101, -71, -88, -70, -56, -73, -51, -68, -67, -77, -49, -68, -82, -74, -77;
/M: SY='S';  M=  61,   1, -62, -60, -73,  12, -64, -70, -61, -54, -66, -52, -66, -55, -65,  76, -45, -61, -77, -18;
/M: SY='C';  M=  11, 123, -69, -67, -20, -65, -70, -72,  -1, -69, -66, -58, -48, -66, -37,  46,  -3, -39, -86, -40;
/I:         I=-7; MD=-17;
/M: SY='S';  M= -43, -75, -13, -36,  12, -69, -56, -22,  20,  15, -60,  36, -75, -21,  15,  43,  -4, -64, -78, -23; D=-7;
/I:         I=-7; MI=0; MD=-17; IM=0; DM=-17;
/M: SY='G';  M= -17, -60, -15, -54, -89,  67, -59, -64, -55, -56, -55,  27, -21, -52, -13, -13, -46, -70, -89, -84; D=-7;
/I:         I=-7; DM=-17;
/M: SY='N';  M= -65, -80, -15, -28, -63, -45, -20, -85,   4, -89, -78,  98, -28, -59,   3, -58, -26, -66, -97, -39; D=-7;
/I:         I=-7; DM=-17;
/M: SY='P';  M= -27, -91, -57,  -2, -89, -46, -73, -50, -42, -52, -75,  -3,  96, -12, -27,  -5, -20, -80, -88, -85; D=-7;
/I:         I=-7; DM=-17;
/M: SY='G';  M= -13, -82, -72, -77, -84,  78, -75, -83, -21, -27, -49, -39, -76, -51,  -9, -11, -11, -81, -83, -80; D=-7;
/I:         I=-7; DM=-17;
/M: SY='P';  M= -27,  -8, -51,   4, -58, -20, -74, -11,  13, -52, -35, -73,  86, -66,  -8, -41, -54, -44, -85, -42; D=-7;
/I:         I=-7; DM=-17;
/M: SY='G';  M=   6, -83, -72,  -7, -85,  73, -77, -61, -65, -43,  -1, -63, -48, -68, -44, -15, -50, -33, -85, -82; D=-7;
/I:         I=-7; DM=-17;
/M: SY='G';  M= -20, -80, -67, -40, -84,  86, -72, -54,  -9, -86, -76, -56, -72, -24, -22, -13, -30, -82, -79, -49; D=-7;
/I:         I=-7; DM=-17;
/M: SY='W';  M=   5, -50, -81, -73, -16, -27, -16,  13,   8, -27, -31, -75, -57, -49, -21, -69, -31, -38, 123,  57; D=-7;
/I:         I=-7; DM=-17;
/M: SY='G';  M=  43, -28, -70, -72, -80,  76, -73, -79, -13, -71, -72, -59, -72, -50, -52, -41, -57, -28, -78, -26; D=-7;
/I:         I=-7; DM=-17;
/M: SY='A';  M=  54, -75, -76, -59,  -2,  22, -27,  -3, -37, -41, -62, -69, -77, -36, -69, -47, -40,   9,  21,  32; D=-7;
/I:         I=-7; DM=-17;
/M: SY='Y';  M= -18, -57, -85, -82,  -8, -33, -66,  43, -78,  11, -36, -81, -84, -77, -62, -73, -64,  47,  -2,  61; D=-7;
/I:         I=-7; DM=-17;
/M: SY='L';  M= -13, -33, -85, -80, -40, -66, -77,  32, -79,  45,  31, -50, -83, -39, -80, -59,   0,  31, -80, -17; D=-7;
/I:         I=-7; DM=-17;
/M: SY='R';  M= -24, -44, -60, -44,  -9, -80, -25,  -2,  -7,  -3,  -5, -55, -63,  14,  48, -11,   9,   1,  30,   4; D=-7;
/I:         I=-7; DM=-17;
/M: SY='Y';  M= -25, -12,  36, -34,  16, -54, -10, -39, -38, -47, -43, -19, -82, -25, -49, -21,  -6, -61,  65,  75; D=-7;
/I:         I=-7; DM=-17;
/M: SY='G';  M= -19, -25, -15, -31, -85,  44, -50, -80,  30, -55, -60,  25,  -3, -20,  26, -23, -16, -53, -86, -77; D=-7;
/I:         I=-7; DM=-17;
/M: SY='D';  M= -26, -84,  38,  23, -85,  36, -11, -84,  10, -68, -76, -18,  -3,  17, -41, -26,  -1, -50, -87, -30; D=-7;
/I:         I=-7; DM=-17;
/M: SY='H';  M= -40, -65, -29, -36, -46,  12,  66, -29,   9, -49, -66, -29, -30,  19,   5, -27,  30, -30,   3,   9; D=-7;
/I:         I=-7; DM=-17;
/M: SY='E';  M= -49, -65,  11,  45, -32, -34,  -6, -42,   0, -47, -71, -27,  -8,  29,  21,  -3,  -1, -20, -86, -53; D=-7;
/I:         I=-7; MI=0; MD=-17; IM=0; DM=-17;
/M: SY='K';  M= -50, -83, -28,  -5, -79, -77, -11,  -8,  66, -75, -68,  -4,  -2, -35,  40, -16, -40,  -9,  -5, -70; D=-7;
/I:         I=-7; DM=-17;
/M: SY='E';  M= -46, -25, -38,  58, -14, -48,   6,  -6, -28, -28, -58, -21, -23,   7, -16, -64,   7,  17,   6, -43; D=-7;
/I:         I=-7; DM=-17;
/M: SY='L';  M= -49, -80, -59, -11, -38, -31, -36,  26,  23,  33,  -5, -13, -79,  14,  16, -45, -46,  -3, -80, -52; D=-7;
/I:         I=-7; MI=0; MD=-17; IM=0; DM=-17;
/M: SY='W';  M= -23, -22, -42,  -4,  18, -48, -23, -19, -18, -50, -42, -64, -78,  15, -36,  44,   0, -10,  59,  -7; D=-7;
/I:         I=-7; DM=-17;
/M: SY='G';  M= -27, -89, -45,  -4,   5,  51, -81, -35, -18, -21, -74, -48, -55, -75, -26, -45, -77, -23,  48, -30; D=-7;
/I:         I=-7; DM=-17;
/M: SY='G';  M=  -5, -57, -74, -41, -22,  41,  -6, -41, -40, -57, -76, -21, -11, -13, -29,  33, -67, -38, -85,  -7; D=-7;
/I:         I=-7; MI=0; MD=-17; IM=0; DM=-17;
/M: SY='E';  M= -21, -92, -19,  41, -26, -25, -61,   5, -11, -28, -74, -35, -11,  -1, -38, -26, -47, -29, -93, -80; D=-7;
/I:         I=-7; MI=0; MD=-17; IM=0; DM=-17;
/M: SY='P';  M= -19,-100, -74, -71, -50,   2, -89, -66, -22, -20, -24, -45,  47,  -2, -49, -13, -46, -66,-100, -92; D=-7;
/I:         I=-7; DM=-17;
/M: SY='Y';  M= -83,  -8, -25, -26,  12, -72,   7,  -2, -84,  16, -66, -84,  30, -65, -87, -37, -14, -70, -22,  32; D=-7;
/I:         I=-7; DM=-17;
/M: SY='E';  M=   8, -80, -36,  34, -40,  21, -48, -38, -15, -20, -64,   1,  31, -47,  -2,   3,  -8, -61, -34, -27; D=-7;
/I:         I=-7; DM=-17;
/M: SY='N';  M= -10, -56,  14,  28, -32,  -5,  27,  -7, -28,  -1, -24,  36,   1,  15,  -1, -47, -15, -30, -80,  -5; D=-7;
/I:         I=-7; DM=-17;
/M: SY='T';  M=  -7,   6, -59, -34, -69, -12,  24, -63, -10, -54, -61,  -7, -64,  13, -62, -14,  90, -22, -84, -17; D=-7;
/I:         I=-7; DM=-17;
/M: SY='T';  M= -49, -62, -57, -59, -69, -62, -65, -62, -57, -67, -62, -46, -60, -58, -64,  57, 102, -54, -86, -66;
/M: SY='N';  M=  39, -66, -43, -58, -76, -51, -23, -71, -52, -77, -67, 109, -23, -53, -59, -44,  -9, -42, -90, -71;
/M: SY='Q';  M= -61, -75, -44, -45, -81, -59, -14, -46, -44, -75, -63,  94, -37,  98, -37, -47, -24, -76, -83, -66;
/M: SY='R';  M= -42, -80, -33, -13, -47, -74, -54, -35,  24, -29,  10, -56, -71,  63,  83, -58, -43, -10, -73, -15;
/M: SY='M';  M=  62, -67, -65, -68, -63,  -4, -64, -48, -66, -20, 105, -66, -70, -61, -68, -54, -18,  -5, -77, -61;
/M: SY='E';  M= -61, -82, -32, 110, -84, -77,  -4, -86, -36, -77, -73, -57, -56, -35, -52, -58, -62, -78, -81, -73;
/M: SY='L';  M= -43,  -4, -84, -78,   0, -85, -68,  25, -77,  76,  26, -81, -83, -71, -52, -75, -63, -28, -68,  10;
/M: SY='M';  M=   1, -62, -46, -11, -18, -68,  -9,  -8, -10,  17,  66, -62, -71,  32,  18, -29,  34, -12,   5, -17;
/M: SY='A';  M=  91, -64, -69, -63, -76,  16, -71, -50, -65, -68, -62, -62, -68, -61, -69, -43, -54, -25, -77, -73;
/M: SY='V';  M=  41, -60, -80, -73,  -9, -74, -76,  33, -73,  34, -43, -75, -28, -71, -75, -62, -30,  54, -77, -60;
/M: SY='I';  M=  -5,  -6, -62,  -2, -50, -80, -19,  75, -29,  22, -37, -46, -74, -26, -50, -49,   0, -11, -73,   8;
/M: SY='E';  M=   8,  28, -57,  51,  -7, -72,  37, -26,  -5, -12,  50, -42, -68,  27,   1, -36, -14, -14, -76, -13;
/M: SY='A';  M=  78, -33, -69, -66, -74,  47, -72, -53, -67, -37, -62, -61, -69, -64, -71, -38, -47,   2, -77, -72;
/M: SY='L';  M= -67,  26, -85, -78, -17, -86, -70,   3, -79,  84,   4, -83, -84, -72, -76, -77, -52, -37, -72, -54;
/M: SY='E';  M= -13, -78,  -8,  64, -77, -66, -25, -56,  47, -36, -41, -24, -64,  41,  22,  -6, -21, -57, -77, -32;
/I:         I=-14; MD=-34;
/M: SY='A';  M=  34, -70, -26, -31, -31, -55, -37, -51,  13, -36, -45, -70, -86, -17, -29,   0,  -9, -50, -91, -13; D=-14;
/I:         I=-14; MI=0; MD=-34; IM=0; DM=-34;
/M: SY='L';  M=  18, -30,  37, -15, -46, -27, -65, -35, -44,  57,  14, -45, -75, -19, -69, -27,  -8, -40, -24, -25;
/M: SY='K';  M=   5, -73, -36, -42,   9,  -9, -42, -63,  59,  -7, -52, -19, -19,  14,  -7,  20,  14, -38,   8, -54;
/M: SY='P';  M= -45, -80,  11,  48, -65,  11, -26, -51,   8, -56, -69,  -6,  49, -16,  39,  12, -37, -47, -80, -60;
/I:         I=-33; MD=-84;
/M: SY='P';  M= -30, -92,  -4, -60, -54,   1,  -4, -30,  -6, -50, -51, -33,  73, -15, -15, -23, -24, -55,  43, -62; D=-33;
/I:         I=-33; MI=0; MD=-84; IM=0; DM=-84;
/M: SY='C';  M= -37,  99, -43,   8, -62, -16,   4, -55,  17, -55, -66, -26,  28,  26,  -4,   9,  -8, -26, -51, -31;
/M: SY='P';  M= -10,  -2,  -5,  28, -78, -54, -16, -39,  28, -62, -66,  16,  51,  22,  19,  19,  -1, -40, -81, -56;
/M: SY='V';  M= -22, -70, -83, -77, -13, -80, -78,  43, -42,  24,  24, -77, -40, -74, -75, -68, -30,  72, -78, -35;
/M: SY='N';  M= -35, -55,   6,  11, -69, -64, -18,   6, -36, -15, -26,  84, -30, -19, -11, -29,  26,   0, -88, -67;
/M: SY='I';  M= -64, -73, -86, -81,  -8, -89, -79,  77, -79,  48, -24, -80, -79, -75, -80, -74, -60,  34, -74, -55;
/M: SY='Y';  M= -64, -54, -70, -31,  19, -78,  31,  18,  -9, -21, -50, -32, -77, -63,   1, -33,   5,  33,  15,  82;
/M: SY='T';  M= -51, -42, -61, -63, -67, -25, -67, -45, -61, -17,  -9, -50, -64, -61, -67,  44,  94,  -6, -86, -65;
/M: SY='D';  M= -69, -82, 117, -32, -88, -65,  -3, -87, -56, -85, -83, -36, -68, -31, -64, -56, -58, -84,-104, -70;
/M: SY='S';  M= -43,  16, -57, -58, -75, -51, -61, -74, -58, -77, -71, -46, -65, -50, -63, 106, -37, -49, -84, -67;
/M: SY='Q';  M=   7, -12, -39,   2, -26, -67, -42, -67,  33, -49, -21,   4, -68,  84,  34,  -8, -19, -44, -74, -26;
/M: SY='Y';  M= -48, -81, -73, -75,  12, -79, -42, -27, -68, -22, -50, -73, -83, -64, -65, -67, -35, -30,  24, 125;
/M: SY='V';  M=  26, -29, -80, -74, -49, -55, -78,  11, -73,  23,  15, -75, -77, -72, -75, -36, -33,  74, -82, -62;
/M: SY='M';  M=   0, -30, -74, -35,  23, -68, -47,  30,   2,  -8,  38, -42, -76,   5,  22, -64, -31,  35, -13,  25;
/M: SY='N';  M= -12, -76,  13,   7, -81,  21,  19, -80,  45, -79, -55,  59, -68,  50, -23, -10, -41, -77, -82, -68;
/I:         I=-17; MD=-42;
/M: SY='G';  M=  28, -73, -69, -69,  -1,  54, -18,   9, -67, -31, -14, -39, -71,   5, -71,  12,   7, -20,   8,  -9; D=-17;
/I:         I=-17; MD=-42;
/M: SY='I';  M= -10, -75, -86, -81,  -5, -86, -77,  67, -78,  34,  48, -80, -80, -75, -79, -73, -54,  23, -74, -11; D=-17;
/I:         I=-17; MD=-42;
/M: SY='T';  M= -66, -77, -33, -27, -78, -68,  40, -69, -26, -39, -47,  49,  -9, -23,  10,   1,  63, -68,  14, -69; D=-17;
/I:         I=-17; MD=-42;
/M: SY='E';  M= -37, -71, -11,  41, -82, -39, -55, -37,  25, -19, -33, -21, -75,  31,  -5, -15,  11, -27, -88, -54; D=-17;
/I:         I=-17; MD=-42;
/M: SY='W';  M= -84,-102, -94, -27, -41, -15,  28, -57, -54,   1, -21, -44, -91, -79, -58, -56, -89, -86, 134, -35; D=-17;
/I:         I=-17; MD=-42;
/M: SY='W';  M= -15, -94,-100, -69, -69, -11, -57,  39, -83,  13,  17, -93, -94, -88, -93, -86, -81, -12,  74, -42; D=-17;
/I:         I=-17; MD=-42;
/M: SY='H';  M= -13, -96, -28, -10, -36, -70,  59, -44, -26,   0, -21, -67,  29, -24, -46, -40, -56, -58, -98, -41; D=-17;
/I:         I=-17; MD=-42;
/M: SY='G';  M= -60, -29, -43, -51, -89,  44, -64,  -9,  -7, -44, -82,  22, -91, -53, -62, -41, -43, -47, -96, -20; D=-17;
/I:         I=-17; MD=-42;
/M: SY='W';  M= -98,-119,-113, -99, -65, -64, -40, -97, -40, -94, -94, -66,-103, -91, -35, -90, -90,-107, 140,  27; D=-17;
/I:         I=-17; MI=0; MD=-42; IM=0; DM=-42;
/M: SY='K';  M= -66,-103, -83, -22,-101, -98, -85, -48,  59, -90, -24, -79, -92,  -1,  12, -53, -55, -37,-101, -91; D=-17;
/I:         I=-17; DM=-42;
/M: SY='K';  M= -18, -99, -84, -58, -98, -92, -37, -78,  41, -83, -33, -60, -92, -25,  38, -20, -13, -40,-101, -88; D=-17;
/I:         I=-17; DM=-42;
/M: SY='N';  M= -88, -99, -72, -54,-100, -80, -38,-101,   8,-102, -90,  64, -96, -68,  54, -72, -79, -70,-107, -90; D=-17;
/I:         I=-17; DM=-42;
/M: SY='G';  M= -75, -98,  -1, -62,-104,  64, -53,-108, -37,-107, -96,  22, -52, -77, -82, -50, -84, -97,-101, -97; D=-17;
/I:         I=-17; DM=-42;
/M: SY='W';  M= -92,-108,-108, -30,  19, -96,-107, -33, -90, -23, -80, -63, -98, -90, -93, -97, -96, -41, 141, -50; D=-17;
/I:         I=-17; DM=-42;
/M: SY='K';  M= -40, -10, -78, -15, -57, -90, -77, -29,  50,   4,   9, -74, -85, -20,  22, -75, -22, -17, -90, -77; D=-17;
/I:         I=-17; DM=-42;
/M: SY='T';  M= -50, -81, -71, -73, -84, -25, -78, -72,   6, -68, -76,  16, -78, -71, -10, -29,  76, -35,   4, -80; D=-17;
/I:         I=-17; DM=-42;
/M: SY='A';  M=  51, -77, -72, -70, -58, -46, -74, -59, -38, -46, -75,  15, -48, -26, -34,  47, -21, -63, -91, -79; D=-17;
/I:         I=-17; DM=-42;
/M: SY='D';  M=  21, -78,  31,  20, -16, -12, -33, -58,   7, -44, -71,  19, -72,  18, -32,   6,   3, -57,   0, -66; D=-17;
/I:         I=-17; DM=-42;
/M: SY='K';  M= -27, -72, -27, -37, -19,  46, -68,  -9,  58, -35, -68, -21,  -7, -57,   9, -14, -64, -72, -78, -70; D=-17;
/I:         I=-17; DM=-42;
/M: SY='K';  M= -26, -44,   4,  31, -47, -26, -55, -74,  67, -42, -55, -29, -40,  50, -15, -13,   2, -44,  16, -31;
/M: SY='P';  M= -32, -84,  -9,  14, -76, -31, -14, -66,  -7, -38, -32, -44, 101, -46, -66,  -2, -10, -73, -77,   4;
/M: SY='V';  M= -24, -69,  -5, -69, -59, -57, -76,  24, -57, -11, -48, -21, -75, -55, -34,  20,   5,  73,  -6, -63;
/M: SY='K';  M= -17, -58, -58,  13, -73, -58, -17, -20,  76, -11,   8, -36,   3,  -5,  -3,   0,  -1, -53, -77, -66;
/M: SY='N';  M= -23, -71,  12, -40, -77, -56,  41, -76, -26, -79, -19, 102, -59, -10, -12,  20, -37, -59, -93, -67;
/M: SY='E';  M=   6, -16,   4,  31, -69, -65, -29,  10,  22, -27, -23, -14,  16,  29,   4, -33, -28,  19, -79, -20;
/I:         I=-38; MI=0; MD=-97; IM=0; DM=-97;
/M: SY='D';  M= -48, -80,  76,  48, -81, -31, -20, -44, -16, -37, -71, -16,  33,  -9, -22,  -5, -12, -47, -88, -71;
/M: SY='L';  M= -68, -73, -46, -53,  -2, -86, -71,  40, -15,  73, -24, -79, -42, -70, -40, -76, -63, -39, -13, -26;
/M: SY='W';  M= -70, -86, -87, -29,  23, -79, -21,   4, -70,   4, -40, -83, -79,  15, -50, -75, -73,  11, 146,   2;
/M: SY='Q';  M=   8, -77, -27,  23, -76, -59, -51, -46,  40, -19, -23,  24,  -4,  70,   0,  -7, -43, -39, -77, -38;
/M: SY='Q';  M=  13, -76, -56,  30, -25, -71, -27, -49,  11,  13, -49, -55, -70,  53,  50,  -6, -23, -59, -73,  -2;
/M: SY='L';  M= -40, -12, -85, -79,  -7, -86, -73,  51, -78,  69, -20, -81, -82, -73, -53, -75, -62,   3, -71,  -4;
/M: SY='D';  M= -13, -61,  61,   1, -46, -60, -30,  29, -14,  16,  -7, -46, -26,  34, -59, -16, -45, -10, -80, -15;
/M: SY='E';  M=  31, -76,   4,  61, -79, -54, -15, -67,   2, -43, -66, -26,  -8,  45,  16,  -5, -32, -48, -79, -51;
/M: SY='L';  M=  25,  12, -58,  16, -25, -74,  -3,   4, -52,  48, -45, -69, -56,   7, -21, -33, -23,   4, -74,  -8;
/M: SY='M';  M=  -6,  25, -71, -28,  -9, -65, -21,  13, -13,  31,  44, -29, -31,  -1,  -4,   3,   8,   8, -23, -32;
/M: SY='Q';  M=  13, -75, -22,   8, -69, -42,  18,   0,  23,   0, -42,  -4, -47,  50,  13,  17, -13, -39, -77, -23;
/I:         I=-9; MI=0; MD=-23; IM=0; DM=-23;
/M: SY='K';  M= -40, -76, -40, -33,   2, -10, -24, -56,  50, -33, -55,  10,  31,   9,  41, -24, -34, -64,   7, -54; D=-9;
/I:         I=-9; DM=-23;
/M: SY='H';  M= -47, -82, -46,  21,  -5, -55, 105, -33,  16, -25, -21, -43,  -3,  -1,   0, -18, -37, -54, -86, -41; D=-9;
/I:         I=-9; DM=-23;
/M: SY='Q';  M= -15, -79,  18,  -3, -62, -36, -23, -46,  24, -67, -12,  22,  32,  43,  28, -14,  19, -47, -81, -30; D=-9;
/I:         I=-9; DM=-23;
/M: SY='V';  M= -26, -29, -40, -78,  24, -63, -81,  64, -45,  -1, -42, -76, -65, -76, -77, -70, -57,  66, -76, -55;
/M: SY='Y';  M= -15, -76,  13,   9,   9, -16, -17, -33,  -6, -65, -42,  -9,  -1,   1,   5,   2,  28, -25, -62,  67;
/M: SY='W';  M= -40, -81, -59, -80,  34, -72, -82,  39, -76,  17, -27, -83, -42, -75, -77, -75, -68,  25, 129,  -1;
/M: SY='H';  M= -14, -39, -21,   5, -15,   6,  66,  21, -17, -15,  -1, -34, -70,  16,   9,  -4,  26, -32, -79, -33;
/M: SY='W';  M= -73, -91, -77, -38, -27, -75,  93, -73, -10, -52, -64, -70, -77, -62, -64, -72, -77, -37, 151,  26;
/M: SY='V';  M= -56,  31, -79, -14, -57, -84, -82,  35, -71, -30, -45, -75, -78, -73, -19, -50, -28,  86, -86, -63;
/M: SY='K';  M= -66, -82, -61, -14, -39, -73, -61, -38,  68, -62, -66, -40,  66, -42,  61, -60, -16, -73, -76, -68;
/M: SY='G';  M=  44, -72, -65, -41, -78,  75, -70, -52, -65, -78, -70, -55, -69, -62, -27,  21, -43, -49,  17, -73;
/M: SY='H';  M= -51, -82, -24, -36, -67, -72, 142, -49, -60, -41, -54, -46, -71, -25, -54, -60, -68, -81, -98,  -7;
/M: SY='S';  M=  22, -70, -14, -22, -74, -61, -60, -36,  28, -58, -45,   6, -21,  32,  -1,  51,  31, -33, -79, -24;
/I:         I=-26; MI=0; MD=-67; IM=0; DM=-67;
/M: SY='G';  M= -42, -79,   6, -15, -34,  77,   0,   3, -69, -18, -21, -17, -45, -54, -75, -45, -35, -39, -22, -34; D=-26;
/I:         I=-26; DM=-67;
/M: SY='H';  M=   9, -75,  23, -27, -38, -33,  87,  27, -59, -43, -58,  27, -71, -56,  -3,  15,   3, -30, -87, -57; D=-26;
/I:         I=-26; DM=-67;
/M: SY='P';  M=  -4, -46, -44,  12, -72,  11, -24, -21,  26, -15, -62, -58,  60,   1,  20,  -8,  -9, -32, -76,  -8;
/M: SY='G';  M=  -9, -78,   0,  38, -11,  65, -15, -74, -44,  -6, -41, -51, -70,  15, -67, -56, -47, -51, -45,   5;
/M: SY='N';  M= -37, -69, -38, -59, -79, -52, -30, -78, -50, -85, -72, 121, -75, -52, -59, -31, -49, -80, -98, -74;
/M: SY='E';  M=  -6, -80,  19,  82, -82, -46,  -9, -57, -27, -76, -70,  21, -64,  31,  15, -56, -33, -40, -84, -71;
/M: SY='R';  M=  -5, -78, -62,  30, -46, -76, -50, -19, -11,  16,  18, -63, -73,  32,  64, -61, -18, -18, -74,   3;
/M: SY='C';  M=  69,  83, -75, -70, -70, -63, -77,   0, -70, -60, -22, -67, -74, -69, -74, -52,  -2,  29, -84, -72;
/M: SY='D';  M= -70, -83, 116, -34, -88, -49, -55, -88, -57, -86, -85, -33, -69, -56, -65, -58, -59, -85,-102, -34;
/M: SY='Q';  M=  19, -75, -28,  36, -25, -32,   5, -59,  35, -19,   8, -57, -40,  40,  10,  -4, -11, -16, -78, -50;
/M: SY='L';  M=  12, -71, -82, -53, -46, -66, -69, -16, -76,  79, -18, -80, -82, -27, -75, -71, -55, -24, -73, -15;
/M: SY='A';  M=  80, -13, -72, -66, -70, -58, -73, -20, -67, -26, -15, -66, -71, -64, -71, -27,   7,  24, -80, -70;
/M: SY='R';  M= -55, -64, -59, -54, -75, -68, -58, -39,  35, -42, -64,  34, -30,  15,  66,  32,  16, -17, -81, -67;
/M: SY='Q';  M=  11, -76, -26,  27, -34, -42, -59, -19,  19, -20, -18, -12, -68,  63,  18,  10,   0, -42, -77, -31;
/M: SY='A';  M=  55, -72, -52, -14, -29,  53, -58, -12, -42, -52, -12, -51,  -1,   3, -70, -33, -60,  -7, -77, -71;
/M: SY='A';  M=  55, -26, -74, -50,   6, -67, -71,  35, -41,   4,  26, -33, -46, -65, -29,  -6, -17,   3, -75, -38;
/M: SY='R';  M=  -4, -70,   7,  15,  -4, -58, -61,   5,  10,  -3,  -3, -31, -30,  33,  33,   4, -10, -27, -74,   4;
/I:         E1=0; IE=-380; DE=-380;

» more

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_03 which contains 573'661 sequence entries.

Total number of hits	486 in 486 different sequences
Number of true positive hits	486 in 486 different sequences
Number of 'unknown' hits	0
Number of false positive hits	0
Number of false negative sequences	0
Number of 'partial' sequences	0

Precision (true positives / (true positives + false positives))	100.00 %
Recall (true positives / (true positives + false negatives))	100.00 %

Comments [info]

Taxonomic range [info]	Archaea, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info]	1
Matrix type [info]	protein_domain
Scaling database [info]	reversed
Author [info]	CJA_Sigrist
Feature key [info]	DOMAIN
Feature description [info]	RNase H type-1
Version [info]	8

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences

486 sequences

EBSB_ENTFA  (P36921), NYNRI_HUMAN (Q9P2P1), NYNRI_MOUSE (Q5DTZ0),

PO113_HUMAN (P63132), POK10_HUMAN (P10266), POK11_HUMAN (Q9UQG0), 
POK18_HUMAN (Q9QC07), POK19_HUMAN (Q9WJR5), POK25_HUMAN (P63136), 
POK6_HUMAN  (Q9BXR3), POK7_HUMAN  (P63135), POK8_HUMAN  (P63133), 
POL_ALV (Q7SQ98), POL_ALVA(Q04095), POL_AVIRE   (P03360), 
POL_BAEVM   (P10272), POL_BIV29   (P19560), POL_BLVAU   (P25059), 
POL_BLVJ(P03361), POL_CAEVC   (P33459), POL_COYMV   (P19199), 
POL_EIAV9   (P11204), POL_EIAVC   (P32542), POL_EIAVY   (P03371), 
POL_FENV1   (P31792), POL_FFV (O93209), POL_FIVPE   (P16088), 
POL_FIVSD   (P19028), POL_FIVT2   (P31822), POL_FLV (P10273), 
POL_FOAMV   (P14350), POL_GALV(P21414), POL_HTL1A   (P03362), 
POL_HTL1C   (P14078), POL_HTL1L   (P0C211), POL_HTL32   (Q0R5R2), 
POL_HTL3P   (Q4U0X6), POL_HTLV2   (P03363), POL_HV190   (O93215), 
POL_HV192   (O12158), POL_HV193   (O89290), POL_HV196   (Q9QBY3), 
POL_HV197   (Q9QBZ9), POL_HV19N   (O41798), POL_HV1A2   (P03369), 
POL_HV1AN   (Q77373), POL_HV1B1   (P03366), POL_HV1B5   (P04587), 
POL_HV1B9   (Q73368), POL_HV1BR   (P03367), POL_HV1EL   (P04589), 
POL_HV1ET   (Q75002), POL_HV1H2   (P04585), POL_HV1JR   (P20875), 
POL_HV1LW   (P0C6F2), POL_HV1M2   (Q9QBZ1), POL_HV1MA   (P04588), 
POL_HV1MN   (P05961), POL_HV1MP   (Q9QBZ5), POL_HV1MV   (Q79666), 
POL_HV1N5   (P12497), POL_HV1ND   (P18802), POL_HV1OY   (P20892), 
POL_HV1RH   (P05959), POL_HV1S2   (Q9WC54), POL_HV1S9   (Q9WC63), 
POL_HV1SE   (O89940), POL_HV1U4   (P24740), POL_HV1V9   (Q9Q720), 
POL_HV1VI   (Q9QSR3), POL_HV1Y2   (P35963), POL_HV1YB   (Q9IDV9), 
POL_HV1YF   (O91080), POL_HV1Z2   (P12499), POL_HV2BE   (P18096), 
POL_HV2CA   (P24107), POL_HV2D1   (P17757), POL_HV2D2   (P15833), 
POL_HV2EH   (Q89928), POL_HV2G1   (P18042), POL_HV2KR   (Q74120), 
POL_HV2NZ   (P05962), POL_HV2RO   (P04584), POL_HV2SB   (P12451), 
POL_HV2ST   (P20876), POL_HV2UC   (Q76634), POL_IPHA(P04026), 
POL_IPMA(P11368), POL_IPMAI   (P12894), POL_JEMBR   (Q82851), 
POL_JSRV(P31623), POL_KORV(Q9TTC1), POL_MLVAV   (P03356), 
POL_MLVBM   (Q7SVK7), POL_MLVCB   (P08361), POL_MLVF5   (P26810), 
POL_MLVFF   (P26809), POL_MLVFP   (P26808), POL_MLVMS   (P03355), 
POL_MLVRD   (P11227), POL_MLVRK   (P31795), POL_MMTVB   (P03365), 
POL_MMTVC   (P11283), POL_MPMV(P07572), POL_OMVVS   (P16901), 
POL_RSVP(P03354), POL_RSVSB   (O92956), POL_SFV1(P23074), 
POL_SFV3L   (P27401), POL_SFVCP   (Q87040), POL_SIVCZ   (P17283), 
POL_SIVEK   (Q1A249), POL_SIVG1   (Q02836), POL_SIVGB   (P22382), 
POL_SIVM1   (P05896), POL_SIVM2   (P05897), POL_SIVMB   (Q1A267), 
POL_SIVS4   (P12502), POL_SIVSP   (P19505), POL_SIVTN   (Q8AII1), 
POL_SIVV1   (P27973), POL_SIVV2   (P12500), POL_SIVV3   (P12501), 
POL_SIVVG   (P27980), POL_SIVVT   (P05895), POL_SMRVH   (P03364), 
POL_SRV1(P04025), POL_SRV2(P51517), POL_VILV(P03370), 
POL_VILV1   (P23426), POL_VILV2   (P23427), POL_VILVK   (P35956), 
POL_WDSV(O92815), POL_WMSV(P03359), POL_XMRV3   (Q2F7J3), 
POL_XMRV4   (Q2F7J0), POL_XMRV6   (A1Z651), RNH1_CRIFA  (Q07762), 
RNH1_HALH5  (Q9KEI9), RNH1_HUMAN  (O60930), RNH1_MOUSE  (O70338), 
RNH1_RAT(Q5BK46), RNH1_SCHPO  (Q9UST8), RNH1_YEAST  (Q04740), 
RNHL_BACSU  (P54162), RNHPH_MYCTU (P9WLH5), RNHX1_ARATH (P0C2F6), 
RNH_ACET2   (A3DD79), RNH_ACICJ   (A5FZ26), RNH_ACIF2   (B7J4E2), 
RNH_ACIF5   (B5EMD8), RNH_ACISJ   (A1W6Q8), RNH_ACTP2   (A3MZE1), 
RNH_ACTSZ   (A6VMP9), RNH_AERHH   (A0KIK4), RNH_AERS4   (A4SPI4), 
RNH_AFIC5   (B6JJ39), RNH_AGRFC   (Q8UHA7), RNH_ALBFT   (Q21YF6), 
RNH_ALCBS   (Q0VQ76), RNH_ALIF1   (Q5E3G5), RNH_ALISL   (B6EJV2), 
RNH_ALKEH   (Q0A753), RNH_ANAD2   (B8J731), RNH_ANADE   (Q2IJL8), 
RNH_ANADF   (A7HB50), RNH_ANAMM   (Q5PBQ8), RNH_ANASK   (B4UMK8), 
RNH_AROAE   (Q5NYP6), RNH_BARBK   (A1URX4), RNH_BARHE   (Q6G4C3), 
RNH_BARQU   (Q6G0C8), RNH_BART1   (A9IQR5), RNH_BAUCH   (Q1LT02), 
RNH_BLOFL   (Q7VQB6), RNH_BLOPB   (Q493H7), RNH_BORA1   (Q2KV56), 
RNH_BORBR   (Q7WCJ8), RNH_BORPE   (Q7VRX8), RNH_BRADU   (Q89UU3), 
RNH_BRASB   (A5EAL2), RNH_BRASO   (A4Z216), RNH_BRUA2   (Q2YMI3), 
RNH_BRUA4   (A6WWG8), RNH_BRUAB   (Q57EP4), RNH_BRUME   (P66673), 
RNH_BRUO2   (A5VP47), RNH_BRUSI   (B0CKG2), RNH_BRUSU   (P66674), 
RNH_BUCAP   (Q08885), RNH_BUCBP   (P59434), RNH_CALS4   (Q8RA67), 
RNH_CALS8   (A4XKQ3), RNH_CAMC1   (A8Z6F7), RNH_CAMC5   (A7H185), 
RNH_CAMJ8   (A8FNU8), RNH_CAMJE   (Q9PM39), RNH_CAMJJ   (A1W1N8), 
RNH_CAMJR   (Q5HSF7), RNH_CAUSK   (B0T025), RNH_CAUVC   (Q9A341), 
RNH_CAUVN   (B8H4W7), RNH_CERS1   (A3PMR3), RNH_CERS5   (A4WNV1), 
RNH_CHESB   (Q11KC5), RNH_CHLCH   (Q3APT0), RNH_CHLL2   (B3EH35), 
RNH_CHLL3   (Q3B2H0), RNH_CHLP8   (B3QM41), RNH_CHLPB   (B3EMT1), 
RNH_CHLPD   (A1BE10), RNH_CHLPM   (A4SFZ9), RNH_CHRSD   (Q1QW64), 
RNH_CHRVO   (Q7NYL8), RNH_CITK8   (A8AKR0), RNH_CLOB1   (A7FR34), 
RNH_CLOBH   (A5HYU6), RNH_CLOBL   (A7GAG3), RNH_COXB1   (B6J5V1), 
RNH_COXB2   (B6J1Y7), RNH_COXBN   (A9KGQ0), RNH_COXBR   (A9NB52), 
RNH_COXBU   (Q83EK3), RNH_CROS8   (A7MI34), RNH_CUPMC   (Q1LL89), 
RNH_CUPNH   (Q0K8W6), RNH_CUPPJ   (Q46Z81), RNH_CYAP4   (B8HPS9), 
RNH_DECAR   (Q47FN9), RNH_DESRM   (A4J7B3), RNH_DICNV   (A5EXP9), 
RNH_DINSH   (A8LLC1), RNH_ECO24   (A7ZHV1), RNH_ECO27   (B7UJB0), 
RNH_ECO45   (B7MBJ0), RNH_ECO55   (B7LHC0), RNH_ECO57   (P0A7Y6), 
RNH_ECO5E   (B5Z0I8), RNH_ECO7I   (B7NKW4), RNH_ECO81   (B7MQ23), 
RNH_ECO8A   (B7M213), RNH_ECOBW   (C4ZRV1), RNH_ECODH   (B1XD78), 
RNH_ECOHS   (A7ZWF6), RNH_ECOL5   (Q0TLC3), RNH_ECOL6   (P0A7Y5), 
RNH_ECOLC   (B1IPU4), RNH_ECOLI   (P0A7Y4), RNH_ECOLU   (B7N876), 
RNH_ECOSE   (B6HZS7), RNH_ECOSM   (B1LHM3), RNH_ECTM1   (A4XU11), 
RNH_EDWI9   (C5BEV5), RNH_EHRCJ   (Q3YR62), RNH_EHRCR   (Q2GHJ9), 
RNH_EHRRG   (Q5FG88), RNH_ENT38   (A4W6V4), RNH_ERWT9   (B2VHJ5), 
RNH_ERYLH   (Q2ND39), RNH_ESCF3   (B7LW89), RNH_FRAAA   (Q0RJ31), 
RNH_FRAP2   (B0TZ91), RNH_FRAT1   (Q14IN1), RNH_FRATF   (A7NBM9), 
RNH_FRATH   (Q2A3X6), RNH_FRATM   (B2SFV9), RNH_FRATN   (A0Q6W0), 
RNH_FRATO   (Q0BMB7), RNH_FRATW   (A4IYE6), RNH_GEOMG   (Q39X47), 
RNH_GEOSL   (Q74BH0), RNH_GEOUR   (A5G5F6), RNH_GLUOX   (Q5FUH9), 
RNH_GRABC   (Q0BQX7), RNH_HAEDU   (Q7VM15), RNH_HAEI8   (Q4QP49), 
RNH_HAEIG   (A5UFU3), RNH_HAEIN   (P43807), RNH_HAHCH   (Q2SJ45), 
RNH_HALHL   (A1WXD7), RNH_HALSA   (Q9HSF6), RNH_HELAH   (Q17XJ7), 
RNH_HELPH   (Q1CTK9), RNH_HELPJ   (Q9ZLH3), RNH_HELPY   (P56120), 
RNH_HERAR   (A4G7G3), RNH_HYDCU   (Q31H49), RNH_HYPNA   (Q0C3M1), 
RNH_IDILO   (Q5QZL3), RNH_JANMA   (A6SXA4), RNH_JANSC   (Q28V43), 
RNH_KLEP3   (B5Y1G2), RNH_KLEP7   (A6T512), RNH_LACP7   (A9KLJ9), 
RNH_LEGPA   (Q5X5I2), RNH_LEGPC   (A5IBM5), RNH_LEGPH   (Q5ZVQ7), 
RNH_LEGPL   (Q5WWW5), RNH_MANSM   (Q65S82), RNH_MARMM   (Q0AMI4), 
RNH_MARN8   (A1U0U9), RNH_METCA   (Q60AW8), RNH_METEP   (A9W185), 
RNH_METFK   (Q1H190), RNH_MIMIV   (Q5UPY1), RNH_MOOTA   (Q2RKU0), 
RNH_MYCGI   (A4T6Y5), RNH_MYCS2   (A0R3Q8), RNH_MYCSM   (Q07705), 
RNH_NEIG1   (Q5F7K9), RNH_NEIMA   (Q9JTD9), RNH_NEIMB   (Q9JYE5), 
RNH_NEIMF   (A1KV38), RNH_NEOSM   (Q2GDA1), RNH_NITEC   (Q0AE34), 
RNH_NITEU   (Q82XV8), RNH_NITHX   (Q1QH30), RNH_NITMU   (Q2Y8K1), 
RNH_NITOC   (Q3J7D4), RNH_NITV2   (Q72E89), RNH_NITV4   (A1VFS4), 
RNH_NITV9   (B8DIU7), RNH_NITWN   (Q3SP51), RNH_NOVAD   (Q2G9E3), 
RNH_OLEA2   (Q30X61), RNH_ORITB   (A5CEP5), RNH_PARC0   (A1TQI7), 
RNH_PARDP   (A1B840), RNH_PARL1   (A7HQX4), RNH_PARM1   (Q2W9A9), 
RNH_PASMU   (P57813), RNH_PECAS   (Q6D1V7), RNH_PECCP   (C6DC65), 
RNH_PELPD   (A1AT66), RNH_PHEZH   (B4R8T3), RNH_PHOLL   (Q7N807), 
RNH_PHOLU   (Q8GF77), RNH_POLAQ   (A4SXM6), RNH_POLNA   (A1VMW5), 
RNH_POLSJ   (Q12B88), RNH_PROA2   (B4S5K2), RNH_PROM1   (A2C030), 
RNH_PROMA   (Q7VDY9), RNH_PROMH   (B4EUG3), RNH_PROMT   (Q46HH3), 
RNH_PSE14   (Q48KX6), RNH_PSEA6   (Q15TA7), RNH_PSEA8   (B7VB62), 
RNH_PSEAB   (Q02KV8), RNH_PSEAE   (Q9I2S9), RNH_PSEE4   (Q1I7T4), 
RNH_PSEF5   (Q4KBI1), RNH_PSEP1   (A5W169), RNH_PSEP7   (A6V705), 
RNH_PSEPF   (Q3KE77), RNH_PSEPG   (B0KN00), RNH_PSEPK   (Q88FF5), 
RNH_PSEPW   (B1JBN1), RNH_PSESM   (Q87YT0), RNH_PSET1   (Q3IIS1), 
RNH_PSEU2   (Q4ZVL1), RNH_PSYIN   (A1SS86), RNH_RALN1   (Q8XZ91), 
RNH_RHIEC   (Q2KBL2), RNH_RHIJ3   (Q1MKH6), RNH_RHILO   (Q985W1), 
RNH_RHIME   (Q92RG0), RNH_RHOBA   (Q7UF86), RNH_RHOP2   (Q2J0F8), 
RNH_RHOPA   (Q6N1Y3), RNH_RHOPS   (Q131J2), RNH_RHOPT   (B3Q6U1), 
RNH_RHORT   (Q2RPU6), RNH_RICAH   (A8GPT6), RNH_RICBR   (Q1RJL7), 
RNH_RICCK   (A8EXT7), RNH_RICCN   (Q92GL5), RNH_RICFE   (Q4UN27), 
RNH_RICM5   (A8F2L0), RNH_RICPR   (Q9ZCK3), RNH_RICTY   (Q68W20), 
RNH_RIPO1   (B7JVG1), RNH_ROSDO   (Q16AK0), RNH_RUEPO   (Q5LNJ2), 
RNH_RUEST   (Q1GDG1), RNH_RUTMC   (A1AW38), RNH_SACEN   (A4FMU3), 
RNH_SALA4   (B5F8X2), RNH_SALAR   (A9MPF1), RNH_SALCH   (Q57SZ6), 
RNH_SALDC   (B5FJ58), RNH_SALEP   (B5R449), RNH_SALG2   (B5R5L3), 
RNH_SALHS   (B4TK85), RNH_SALNS   (B4SV39), RNH_SALPA   (Q5PFD8), 
RNH_SALPB   (A9MZ19), RNH_SALPC   (C0Q6N2), RNH_SALPK   (B5BDW5), 
RNH_SALSV   (B4TYH0), RNH_SALTI   (P0A2C0), RNH_SALTY   (P0A2B9), 
RNH_SERP5   (A8GA77), RNH_SHEAM   (A1S6T0), RNH_SHEB2   (B8E599), 
RNH_SHEB5   (A3D440), RNH_SHEB8   (A6WMW8), RNH_SHEB9   (A9L0F2), 
RNH_SHEDO   (Q12MM4), RNH_SHEFN   (Q081L4), RNH_SHEHH   (B0TRM1), 
RNH_SHELP   (A3QET0), RNH_SHEON   (Q8EE30), RNH_SHEPC   (A4Y6C1), 
RNH_SHESA   (A0KXS6), RNH_SHESH   (A8FUS8), RNH_SHESM   (Q0HI86), 
RNH_SHESR   (Q0HUI2), RNH_SHESW   (A1RK75), RNH_SHEWM   (B1KHK0), 
RNH_SHIB3   (B2U352), RNH_SHIBS   (Q325T2), RNH_SHIDS   (Q32JP9), 
RNH_SHIFL   (P0A7Y7), RNH_SHISS   (Q3Z5E9), RNH_SINMW   (A6U6V5), 
RNH_SODGM   (Q2NVF9), RNH_SOLUE   (Q01RW8), RNH_STRCO   (Q9X7R6), 
RNH_STUS1   (A4VLR0), RNH_SULNB   (A6QCI9), RNH_SULTO   (F9VN79), 
RNH_SYMTH   (Q67K93), RNH_SYNAS   (Q2LWY9), RNH_SYNC1   (Q3A827), 
RNH_SYNFM   (A0LGJ7), RNH_SYNWW   (Q0AV47), RNH_SYNY3   (Q55801), 
RNH_THEP3   (B0K9M0), RNH_THEPX   (B0K1A7), RNH_THET2   (Q72IE1), 
RNH_THET8   (P29253), RNH_THEVB   (Q8DM24), RNH_THIDA   (Q3SIB2), 
RNH_TOLAT   (C4LC60), RNH_TREDE   (Q73K21), RNH_TREPA   (O83372), 
RNH_TREPS   (B2S2V0), RNH_TRIEI   (Q115G0), RNH_TROW8   (Q83HK9), 
RNH_TROWT   (Q83GM3), RNH_VEREI   (A1WFG9), RNH_VESOH   (A5CX29), 
RNH_VIBA3   (B7VIP1), RNH_VIBC1   (A7MY21), RNH_VIBC3   (A5F633), 
RNH_VIBCH   (Q9KPX8), RNH_VIBCM   (C3LPN8), RNH_VIBPA   (Q87MG2), 
RNH_VIBVU   (Q8DBD5), RNH_VIBVY   (Q7MII6), RNH_WIGBR   (Q8D3D3), 
RNH_WOLPM   (Q73I74), RNH_WOLWR   (C0R2X2), RNH_XANAC   (Q8PNH8), 
RNH_XANC8   (Q4URM3), RNH_XANCP   (Q8PBX8), RNH_XANE5   (Q3BWP3), 
RNH_XANOM   (Q2P6Y2), RNH_XANOR   (Q5H426), RNH_XYLFA   (Q9PBI6), 
RNH_XYLFT   (Q87C76), RNH_YERE8   (A1JKB1), RNH_YERP3   (A7FFK7), 
RNH_YERPA   (Q1CAJ5), RNH_YERPB   (B2KAC9), RNH_YERPE   (Q8ZH30), 
RNH_YERPG   (A9R0G0), RNH_YERPN   (Q1CFI6), RNH_YERPP   (A4TL54), 
RNH_YERPS   (Q667M7), RNH_YERPY   (B1JR46), RNH_ZYMMO   (O69014), 
Y2228_MYCTO (P9WLH4), Y2253_MYCBO (P64956), YPEP_BACSU  (P54164)

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Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:
[Clustal format, color, condensed view] [Clustal format, color]
[Clustal format, plain text] [Fasta format]
Retrieve the sequence logo from the alignment

PDB
[Detailed view]

617 PDB

pdb_00001bqm; pdb_00001bqn; pdb_00001c0t; pdb_00001c0u; pdb_00001c1b; pdb_00001c1c; pdb_00001dlo; pdb_00001dtq; pdb_00001dtt; pdb_00001eet; pdb_00001ep4; pdb_00001f21; pdb_00001fk9; pdb_00001fko; pdb_00001fkp; pdb_00001g15; pdb_00001goa; pdb_00001gob; pdb_00001goc; pdb_00001hmv; pdb_00001hni; pdb_00001hnv; pdb_00001hpz; pdb_00001hqe; pdb_00001hqu; pdb_00001hrh; pdb_00001hvu; pdb_00001hys; pdb_00001ikv; pdb_00001ikw; pdb_00001ikx; pdb_00001iky; pdb_00001j5o; pdb_00001jkh; pdb_00001jl1; pdb_00001jl2; pdb_00001jla; pdb_00001jlb; pdb_00001jlc; pdb_00001jle; pdb_00001jlf; pdb_00001jlg; pdb_00001jlq; pdb_00001jxb; pdb_00001kjg; pdb_00001klm; pdb_00001kva; pdb_00001kvb; pdb_00001kvc; pdb_00001lav; pdb_00001law; pdb_00001lw0; pdb_00001lw2; pdb_00001lwc; pdb_00001lwe; pdb_00001lwf; pdb_00001mu2; pdb_00001n5y; pdb_00001n6q; pdb_00001o1w; pdb_00001qe1; pdb_00001r0a; pdb_00001rbr; pdb_00001rbs; pdb_00001rbt; pdb_00001rbu; pdb_00001rbv; pdb_00001rch; pdb_00001rda; pdb_00001rdb; pdb_00001rdc; pdb_00001rdd; pdb_00001rdh; pdb_00001rev; pdb_00001ril; pdb_00001rnh; pdb_00001rt1; pdb_00001rt2; pdb_00001rt3; pdb_00001rt4; pdb_00001rt5; pdb_00001rt6; pdb_00001rt7; pdb_00001rtd; pdb_00001rth; pdb_00001rti; pdb_00001rtj; pdb_00001s1t; pdb_00001s1u; pdb_00001s1v; pdb_00001s1w; pdb_00001s1x; pdb_00001s6p; pdb_00001s6q; pdb_00001s9e; pdb_00001s9g; pdb_00001suq; pdb_00001sv5; pdb_00001t03; pdb_00001t05; pdb_00001tkt; pdb_00001tkx; pdb_00001tkz; pdb_00001tl1; pdb_00001tl3; pdb_00001tv6; pdb_00001tvr; pdb_00001uwb; pdb_00001vrt; pdb_00001vru; pdb_00001wse; pdb_00001wsf; pdb_00001wsg; pdb_00001wsh; pdb_00001wsi; pdb_00001wsj; pdb_00001zbf; pdb_00001zbi; pdb_00001zbl; pdb_00002b5j; pdb_00002b6a; pdb_00002ban; pdb_00002be2; pdb_00002e4l; pdb_00002ehg; pdb_00002g8f; pdb_00002g8h; pdb_00002g8i; pdb_00002g8k; pdb_00002g8u; pdb_00002g8v; pdb_00002g8w; pdb_00002hb5; pdb_00002hmi; pdb_00002hnd; pdb_00002hny; pdb_00002hnz; pdb_00002i5j; pdb_00002iaj; pdb_00002ic3; pdb_00002lsn; pdb_00002nxl; pdb_00002opp; pdb_00002opq; pdb_00002opr; pdb_00002ops; pdb_00002qk9; pdb_00002qkb; pdb_00002qkk; pdb_00002r7y; pdb_00002rf2; pdb_00002rki; pdb_00002rn2; pdb_00002rpi; pdb_00002vg5; pdb_00002vg6; pdb_00002vg7; pdb_00002wom; pdb_00002won; pdb_00002ykm; pdb_00002ykn; pdb_00002ynf; pdb_00002yng; pdb_00002ynh; pdb_00002yni; pdb_00002yv0; pdb_00002z1g; pdb_00002z1h; pdb_00002z1i; pdb_00002z1j; pdb_00002zd1; pdb_00002ze2; pdb_00002zqb; pdb_00003aa2; pdb_00003aa3; pdb_00003aa4; pdb_00003aa5; pdb_00003aly; pdb_00003bgr; pdb_00003c6t; pdb_00003c6u; pdb_00003d0p; pdb_00003di6; pdb_00003dle; pdb_00003dlg; pdb_00003dlk; pdb_00003dm2; pdb_00003dmj; pdb_00003dok; pdb_00003dol; pdb_00003drp; pdb_00003drr; pdb_00003drs; pdb_00003dya; pdb_00003e01; pdb_00003ey1; pdb_00003ffi; pdb_00003hst; pdb_00003hvt; pdb_00003hyf; pdb_00003i0r; pdb_00003i0s; pdb_00003i8d; pdb_00003ig1; pdb_00003irx; pdb_00003is9; pdb_00003isn; pdb_00003ith; pdb_00003jsm; pdb_00003jyt; pdb_00003k2p; pdb_00003kjv; pdb_00003kk1; pdb_00003kk2; pdb_00003kk3; pdb_00003kle; pdb_00003klf; pdb_00003klg; pdb_00003klh; pdb_00003kli; pdb_00003lak; pdb_00003lal; pdb_00003lam; pdb_00003lan; pdb_00003lp0; pdb_00003lp1; pdb_00003lp2; pdb_00003lp3; pdb_00003m8p; pdb_00003m8q; pdb_00003mec; pdb_00003med; pdb_00003mee; pdb_00003meg; pdb_00003nbp; pdb_00003p1g; pdb_00003qin; pdb_00003qio; pdb_00003qip; pdb_00003qlh; pdb_00003qo9; pdb_00003t19; pdb_00003t1a; pdb_00003tam; pdb_00003twh; pdb_00003uld; pdb_00003v1o; pdb_00003v1q; pdb_00003v1r; pdb_00003v4i; pdb_00003v6d; pdb_00003v81; pdb_00004b3o; pdb_00004b3p; pdb_00004b3q; pdb_00004dg1; pdb_00004e19; pdb_00004e89; pdb_00004g1q; pdb_00004h4m; pdb_00004h4o; pdb_00004hkq; pdb_00004htu; pdb_00004hue; pdb_00004huf; pdb_00004hug; pdb_00004i2p; pdb_00004i2q; pdb_00004i7f; pdb_00004icl; pdb_00004id5; pdb_00004idk; pdb_00004ifv; pdb_00004ify; pdb_00004ig0; pdb_00004ig3; pdb_00004kfb; pdb_00004kko; pdb_00004ko0; pdb_00004kv8; pdb_00004lsl; pdb_00004lsn; pdb_00004mfb; pdb_00004mh8; pdb_00004ncg; pdb_00004nyn; pdb_00004o44; pdb_00004o4g; pdb_00004opj; pdb_00004opk; pdb_00004pqu; pdb_00004puo; pdb_00004pwd; pdb_00004q0b; pdb_00004qag; pdb_00004r5p; pdb_00004rw4; pdb_00004rw6; pdb_00004rw7; pdb_00004rw8; pdb_00004rw9; pdb_00004we1; pdb_00004z0u; pdb_00004zhr; pdb_00005c24; pdb_00005c25; pdb_00005c42; pdb_00005cym; pdb_00005cyq; pdb_00005d3g; pdb_00005dmq; pdb_00005dmr; pdb_00005fdl; pdb_00005hbm; pdb_00005hlf; pdb_00005hp1; pdb_00005hro; pdb_00005i3u; pdb_00005i42; pdb_00005j1e; pdb_00005j2m; pdb_00005j2n; pdb_00005j2p; pdb_00005j2q; pdb_00005k14; pdb_00005swm; pdb_00005ter; pdb_00005tuq; pdb_00005tw3; pdb_00005txl; pdb_00005txm; pdb_00005txn; pdb_00005txo; pdb_00005txp; pdb_00005us2; pdb_00005usa; pdb_00005use; pdb_00005usg; pdb_00005uv5; pdb_00005vaj; pdb_00005vqq; pdb_00005vqr; pdb_00005vqs; pdb_00005vqt; pdb_00005vqu; pdb_00005vqv; pdb_00005vqw; pdb_00005vqx; pdb_00005vqy; pdb_00005vqz; pdb_00005vz6; pdb_00005w7n; pdb_00005w7o; pdb_00005wjr; pdb_00005xn0; pdb_00005xn1; pdb_00005xn2; pdb_00006amo; pdb_00006an2; pdb_00006an8; pdb_00006anq; pdb_00006aoc; pdb_00006asw; pdb_00006avm; pdb_00006avt; pdb_00006b19; pdb_00006bsg; pdb_00006bsh; pdb_00006bsi; pdb_00006bsj; pdb_00006c0j; pdb_00006c0k; pdb_00006c0l; pdb_00006c0n; pdb_00006c0o; pdb_00006c0p; pdb_00006c0r; pdb_00006cgf; pdb_00006dmn; pdb_00006dmv; pdb_00006do8; pdb_00006do9; pdb_00006doa; pdb_00006dob; pdb_00006doc; pdb_00006dod; pdb_00006doe; pdb_00006dof; pdb_00006dog; pdb_00006doh; pdb_00006doi; pdb_00006doj; pdb_00006dok; pdb_00006dol; pdb_00006dom; pdb_00006don; pdb_00006doo; pdb_00006dop; pdb_00006doq; pdb_00006dor; pdb_00006dos; pdb_00006dot; pdb_00006dou; pdb_00006dov; pdb_00006dow; pdb_00006dox; pdb_00006doy; pdb_00006doz; pdb_00006dp0; pdb_00006dp1; pdb_00006dp2; pdb_00006dp3; pdb_00006dp4; pdb_00006dp5; pdb_00006dp6; pdb_00006dp7; pdb_00006dp8; pdb_00006dp9; pdb_00006dpa; pdb_00006dpb; pdb_00006dpc; pdb_00006dpd; pdb_00006dpe; pdb_00006dpf; pdb_00006dpg; pdb_00006dph; pdb_00006dpi; pdb_00006dpj; pdb_00006dpk; pdb_00006dpl; pdb_00006dpm; pdb_00006dpn; pdb_00006dpo; pdb_00006dpp; pdb_00006dtw; pdb_00006dtx; pdb_00006duf; pdb_00006dug; pdb_00006duh; pdb_00006ecl; pdb_00006eli; pdb_00006hak; pdb_00006ik9; pdb_00006ika; pdb_00006kdj; pdb_00006kdk; pdb_00006kdm; pdb_00006kdn; pdb_00006kdo; pdb_00006o9e; pdb_00006oe3; pdb_00006or7; pdb_00006otz; pdb_00006oun; pdb_00006p1i; pdb_00006p1x; pdb_00006p2g; pdb_00006uir; pdb_00006uis; pdb_00006uit; pdb_00006ujx; pdb_00006ujy; pdb_00006ujz; pdb_00006uk0; pdb_00006ul5; pdb_00006vrd; pdb_00006vug; pdb_00006waz; pdb_00006wb0; pdb_00006wb1; pdb_00006wb2; pdb_00006wpf; pdb_00006wph; pdb_00006wpj; pdb_00006x47; pdb_00006x49; pdb_00006x4a; pdb_00006x4b; pdb_00006x4c; pdb_00006x4d; pdb_00006x4e; pdb_00006x4f; pdb_00007ahx; pdb_00007aid; pdb_00007aif; pdb_00007aig; pdb_00007aii; pdb_00007aij; pdb_00007dbm; pdb_00007dbn; pdb_00007kjv; pdb_00007kjw; pdb_00007kjx; pdb_00007krc; pdb_00007krd; pdb_00007kre; pdb_00007krf; pdb_00007kwu; pdb_00007lpw; pdb_00007lpx; pdb_00007lqu; pdb_00007lri; pdb_00007lrm; pdb_00007lrx; pdb_00007lry; pdb_00007lsk; pdb_00007ot6; pdb_00007ota; pdb_00007otk; pdb_00007otn; pdb_00007otx; pdb_00007otz; pdb_00007out; pdb_00007oxq; pdb_00007oz2; pdb_00007oz5; pdb_00007ozw; pdb_00007p15; pdb_00007sep; pdb_00007sjx; pdb_00007slr; pdb_00007sls; pdb_00007snp; pdb_00007snz; pdb_00007so1; pdb_00007so2; pdb_00007so3; pdb_00007so4; pdb_00007so6; pdb_00007sr6; pdb_00007taz; pdb_00007u5z; pdb_00007vsa; pdb_00007vsb; pdb_00007vsc; pdb_00007vsd; pdb_00007vse; pdb_00007xiu; pdb_00007xj4; pdb_00007xj5; pdb_00007xj7; pdb_00007z24; pdb_00007z29; pdb_00007z2d; pdb_00007z2e; pdb_00007z2g; pdb_00007z2h; pdb_00008cty; pdb_00008ctz; pdb_00008cu0; pdb_00008dx2; pdb_00008dx3; pdb_00008dx8; pdb_00008dxb; pdb_00008dxe; pdb_00008dxg; pdb_00008dxh; pdb_00008dxi; pdb_00008dxj; pdb_00008dxk; pdb_00008dxl; pdb_00008dxm; pdb_00008fcc; pdb_00008fcd; pdb_00008fce; pdb_00008fe8; pdb_00008ffx; pdb_00008jyh; pdb_00008jyi; pdb_00008jyj; pdb_00008stp; pdb_00008stq; pdb_00008str; pdb_00008sts; pdb_00008stt; pdb_00008stu; pdb_00008stv; pdb_00008sv3; pdb_00008sv4; pdb_00008swb; pdb_00008swc; pdb_00008u69; pdb_00008u6a; pdb_00008u6b; pdb_00008u6c; pdb_00008u6d; pdb_00008u6e; pdb_00008u6f; pdb_00008u6g; pdb_00008u6h; pdb_00008u6i; pdb_00008u6j; pdb_00008u6k; pdb_00008u6l; pdb_00008u6m; pdb_00008u6n; pdb_00008u6o; pdb_00008u6p; pdb_00008u6q; pdb_00008u6r; pdb_00008u6s; pdb_00008u6t; pdb_00008vb6; pdb_00008vb7; pdb_00008vb8; pdb_00008vb9; pdb_00008vbc; pdb_00008vbd; pdb_00008vbe; pdb_00008vbf; pdb_00008vbg; pdb_00008vbh; pdb_00008vbi; pdb_00008x1z; pdb_00008x20; pdb_00008x21; pdb_00008x22
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