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PROSITE entry PS50990


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General information about the entry

PURL [info] https://purl.expasy.org/prosite/signature/PS50990
Entry name [info] PEPTIDASE_C39
Accession [info] PS50990
Entry type [info] MATRIX
Date [info] 01-MAY-2004 CREATED;
10-MAY-2017 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC50990
Associated ProRule [info] PRU00362

Name and characterization of the entry

Description [info] Peptidase family C39 domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=121;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=116;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=6.5794134; R2=0.0133220; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=6752.6582031; R2=2.4905064; PRIORITY=1; TEXT='Heuristic 5.0%';
/CUT_OFF: LEVEL=0; SCORE=250; H_SCORE=7375; N_SCORE=9.9; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=-5; H_SCORE=6740; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-8; D=-50; I=-50; B0=-1000; B1=-1000; E0=-1000; E1=-1000; MI=-105; MD=-105; IM=-105; DM=-105;
...
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_02 which contains 573'230 sequence entries.


Total number of hits 41 in 41 different sequences
Number of true positive hits 41 in 41 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Archaea, Bacteriophages, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] V_Lesaux
Feature key [info] DOMAIN
Feature description [info] Peptidase C39
Version [info] 5

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
41 sequences

COMA_STRPN  (Q03727), COMA_STRR6  (P59653), CVAB_ECOLX  (P22520), 
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PDB
[Detailed view]
6 PDB

3ZUA; 7SGR; 8DCK; 8HF4; 8HF5; 8K7A