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PROSITE documentation PDOC51450 [for PROSITE entry PS51450]

Leucine rich repeat profile





Description

The leucine-rich repeat (LRR) domain is formed from tandem arrays (2 to 52 repeats) containing a leucine-rich consensus sequence. LRR proteins have been identified in viruses, bacteria, archae and eukaryotes. LRR domains mediate macromolecular interactions in processes as diverse as bacterial invasion of host cells, the plant immune response, and inhibition of RNA binding. All LRR repeats can be divided into a highly conserved segment and a variable segment. The highly conserved segment consists either of an 11-residue stretch, LxxLxLxxNxL, or a 12-residue stretch, LxxLxLxxCxxL. Variable sequences connecting the consensus provide functional diversity for binding [1,2].

Various crystallographic studies of leucine-rich repeats revealed that each LRR contains a β-strand and an α-helix connected by loops (see for example <PDB:2BNH>) [3]. Multiple LRRs are arranged so that they form a nonglobular, horseshoe-shaped structure, wherein parallel β-sheets line the inner circumference of the horseshoe (the concave side) and α-helices decorate the outer circumference (the convex side). Although the sequences and numbers of LRRs can differ, diverse LRRs share this overall horseshoe shape. Mutagenesis studies and structural analyses of LRR-ligand complexes have revealed that the concave surface of LRRs is involved mainly in ligand binding [2].

In various types of repeats it has been shown that they fold in a highly cooperative manner. In general folding of an individual repeat is energetically unfavorable, whereas formation of interrepeat interfaces is highly favorable. Thus, folding is initiated only when two adjacent repeats fold forming a favorable interface. Once this activation energy barrier is surpassed, folding proceeds rapidly, via a nucleation-propagation mechanism. In some LRR repeats it has been show that nucleation initiate in the N-terminal capping domain [4,5].

The profile we developed covers the 22 amino acids of the LRR repeat.

Note:

sea lampreys have evolved a primitive immune system based on the LRR domain scaffold. The LRR is used instead of the Ig domain to generate diversity [6].

Last update:

December 2009 / First entry.

Technical section

PROSITE method (with tools and information) covered by this documentation:

LRR, PS51450; Leucine-rich repeat profile  (MATRIX)


References

1AuthorsMatsushima N., Tachi N., Kuroki Y., Enkhbayar P., Osaki M., Kamiya M., Kretsinger R.H.
TitleStructural analysis of leucine-rich-repeat variants in proteins associated with human diseases.
SourceCell. Mol. Life Sci. 62:2771-2791(2005).
PubMed ID16231091
DOI10.1007/s00018-005-5187-z

2AuthorsKobe B., Kajava A.V.
TitleThe leucine-rich repeat as a protein recognition motif.
SourceCurr. Opin. Struct. Biol. 11:725-732(2001).
PubMed ID11751054

3AuthorsKobe B., Deisenhofer J.
TitleCrystal structure of porcine ribonuclease inhibitor, a protein with leucine-rich repeats.
SourceNature 366:751-756(1993).
PubMed ID8264799
DOI10.1038/366751a0

4AuthorsTruhlar S.M., Komives E.A.
TitleLRR domain folding: just put a cap on it!
SourceStructure 16:655-657(2008).
PubMed ID18462667
DOI10.1016/j.str.2008.04.002

5AuthorsCourtemanche N., Barrick D.
TitleThe leucine-rich repeat domain of Internalin B folds along a polarized N-terminal pathway.
SourceStructure 16:705-714(2008).
PubMed ID18462675
DOI10.1016/j.str.2008.02.015

6AuthorsPancer Z., Amemiya C.T., Ehrhardt G.R., Ceitlin J., Gartland G.L., Cooper M.D.
TitleSomatic diversification of variable lymphocyte receptors in the agnathan sea lamprey.
SourceNature 430:174-180(2004).
PubMed ID15241406
DOI10.1038/nature02740



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