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PROSITE entry PS51625


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PURL: https://purl.expasy.org/prosite/signature/PS51625

Direct ScanProsite submission
General information about the entry

Entry name [info] SAM_MT_TRMB
Accession [info] PS51625
Entry type [info] MATRIX
Date [info] 01-NOV-2011 CREATED;
13-FEB-2019 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC51555
Associated ProRule [info] PRU00957

Name and characterization of the entry

Description [info] SAM-dependent methyltransferase TRMB-type domain profile.
Matrix / Profile [info]
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=217;
/DISJOINT: DEFINITION=PROTECT; N1=6; N2=212;
/NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.8679590; R2=0.0076294; TEXT='NScore';
/NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=-27916.8261719; R2=23.4569225; PRIORITY=1; TEXT='Heuristic 0.5%';
/CUT_OFF: LEVEL=0; SCORE=1591; H_SCORE=9403; N_SCORE=14.0; MODE=1; TEXT='!';
/CUT_OFF: LEVEL=-1; SCORE=608; N_SCORE=6.5; MODE=1; TEXT='?';
/DEFAULT: M0=-22; D=-150; I=-150; B1=-1000; E1=-1000; MI=-380; MD=-380; IM=-380; DM=-380;
...
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Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2025_03 which contains 573'661 sequence entries.


Total number of hits 557 in 557 different sequences
Number of true positive hits 557 in 557 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 0
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 100.00 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Matrix type [info] protein_domain
Scaling database [info] reversed
Author [info] CJA_Sigrist
Feature key [info] DOMAIN
Feature description [info] SAM-dependent MTase TRMB-type
Version [info] 4

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
557 sequences

RFTRM_RICBR (Q1RH40), RFTRM_RICCN (Q92G13), RFTRM_RICFE (Q4UJU4), 
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PDB
[Detailed view]
23 PDB

1YZH; 2FCA; 2VDU; 2VDV; 3CKK; 3DXX; 3DXY; 3DXZ; 7NYB; 7NZI; 7NZJ; 7OGJ;
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