PROSITE entry PS52037
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General information about the entry
| Entry name [info] | ZF_RG_C |
| Accession [info] | PS52037 |
| Entry type [info] | MATRIX |
| Date [info] |
24-JAN-2024 CREATED;
24-JAN-2024 DATA UPDATE; 29-MAY-2024 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC52036 |
| Associated ProRule [info] | PRU01381 |
Name and characterization of the entry
| Description [info] | Zinc finger reverse gyrase C-terminal-type profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ACDEFGHIKLMNPQRSTVWY'; LENGTH=28; /DISJOINT: DEFINITION=PROTECT; N1=3; N2=26; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=2.2025275; R2=0.0117856; TEXT='-LogE'; /CUT_OFF: LEVEL=0; SCORE=1426; N_SCORE=19.0; MODE=1; TEXT='!'; /CUT_OFF: LEVEL=-1; SCORE=365; N_SCORE=6.5; MODE=1; TEXT='?'; /DEFAULT: M0=-107; D=-150; I=-150; B1=-1000; E1=-1000; MI=-380; MD=-380; IM=-380; DM=-380; ... A C D E F G H I K L M N P Q R S T V W Y /I: B1=0; BI=-380; BD=-380; /M: SY='I'; M=-214,-224,-234,-230,-195,-238,-229, 106,-226, 38,-182,-226,-225,-222, -89,-223,-208, -48,-222,-204; /M: SY='K'; M=-109,-225,-206,-195,-218, 0,-205,-122, 104,-223,-213, -84,-214,-192, 21, -55, -40,-106,-216, 29; /M: SY='R'; M=-214,-229,-209,-196,-225,-223,-223,-230, 73,-224,-213,-201,-219,-188, 108,-108,-211,-224,-223,-212; /M: SY='C'; M=-209, 161,-229,-229,-220,-225,-229,-227,-225,-217,-217,-216,-240,-233,-232,-212,-210,-214,-250,-230; /M: SY='R'; M= -30,-222, -98, 9, -88,-128,-207, -1, 25, 34, 20, -9, -18, -11, 58, 17, -76, -37,-221, -8; /M: SY='N'; M= -51,-220, 34, 25,-224,-128,-201, -97, 53, -97,-215, 76,-214, -35, 15, 34, -40, -24,-232,-216; /I: I=-42; MI=0; MD=-106; IM=0; DM=-106; /M: SY='C'; M=-215, 154, -91,-233,-225,-230, 134,-232, -64,-223,-223,-220,-245,-237,-235,-217,-215,-220,-254,-235; /I: I=-42; MD=-106; /M: SY='G'; M=-199,-223,-119, -84,-134, 99,-211,-233, 2,-110,-220, 50,-216, -91, -34, -73,-210,-229,-223,-122; D=-42; /I: I=-42; MI=-106; MD=-106; IM=-106; DM=-106; /M: SY='H'; M= -22,-225, -96, 44, -79,-218, 99,-220, 19,-214,-206, -27,-216,-194, 35, -51, 9,-103,-212, 79; D=-42; /I: I=-42; DM=-106; /M: SY='Q'; M=-107,-227, -37,-185,-230,-214,-198,-152,-191,-118,-148, -89,-213, 133,-192, -28, 29, -34,-222,-209; /M: SY='F'; M=-217,-219,-232,-228, 116,-230, 0, 9,-224, -97,-195,-117,-230,-229,-222,-219,-201, 27, 12, 18; /M: SY='T'; M= -15,-211,-212,-212, -67,-215,-218, -77,-210,-125,-202,-203, -27,-211,-216, 32, 95, 62,-233,-211; /M: SY='D'; M=-106,-224, 75, 51,-226, 36, -32, -73, 18, -78, -35, -45,-212, 17,-103, 20, -61, -90,-229, -39; /M: SY='E'; M= -87,-223, 47, 55, 12, 4, -8, -49, -40, -28,-142, -34, 9, -42, -36, 35, -11, -63, 10, 23; /M: SY='E'; M= -39,-221, 35, 53, -25, -24, -78, -11, -10, -5, -65, -12, -45, -44, 2, 21, -13, 17,-223, 11; /I: I=-17; MD=-42; /M: SY='D'; M=-100,-143, 63, 36,-242, -66, -77,-141, -21,-113, -93, 17, -29, -2,-109, 19, -68, -60,-249, -58; D=-17; /I: I=-17; MI=0; MD=-42; IM=0; DM=-42; /M: SY='K'; M= -15,-220,-150, 31, -15,-216, -31, -44, 67, -71,-131, -50, -91, 10, 21, 21, 24, 21,-223,-101; /M: SY='C'; M=-208, 162,-228,-228,-219,-224,-228,-225,-224,-216,-216,-214,-239,-232,-231,-211,-208,-213,-248,-229; /M: SY='P'; M=-213,-237,-214,-203,-231,-216,-114, -58,-106,-129,-216,-121, 133,-213, -94, -84,-101, -62,-227,-229; /M: SY='Y'; M= -97,-224,-209, -97, -40,-219,-199, 21, 51, -67, -67, 40,-221,-101, 61, -22, -97, -16, -57, 82; /M: SY='C'; M=-209, 161, -48,-227,-219,-224,-228,-226,-224,-216, -87,-214,-239,-231,-230,-211,-209,-214,-249,-229; /M: SY='G'; M=-115,-223, -74, -97,-228, 101, 8,-233, 3,-229, -5, -26,-141,-209, -48, -21,-212,-228,-223,-221; /M: SY='S'; M=-120,-213, -98,-114, -90, 22, -76,-221,-146,-224,-217, -42,-212,-199,-193, 107, 15,-106,-229,-101; /M: SY='T'; M= -53,-220, 14, 54,-222, -65,-206, -62, 31, -73,-102, -8, -21, -7, 27, 14, 62, -50,-229, -83; /M: SY='N'; M= -61,-221, 46, 32, -51,-216, -73, -4, 1, 5, -47, 65,-120, 0, 4, -57, -44, 25,-230, -77; /M: SY='I'; M=-127,-221, -81, 19, 32,-232,-222, 79,-101, -13,-190,-221,-223, -88,-221,-127,-115, 57,-216, 17; /M: SY='R'; M= -81,-221, 38, -40, 7,-221, -23, 17, -18, 12, -32, -34,-220, -8, 39, -1, 22, 9, -96, 38; /I: I=-38; MI=0; MD=-97; IM=0; DM=-97; /M: SY='D'; M=-110,-221, 100,-188,-229,-207,-119,-227, 21,-228,-223, -32,-213,-199,-145, 70, -11,-222,-239,-216; /I: I=-45; E1=0; MI=0; IE=0; DE=-115;» more |
Numerical results [info]
| Total number of hits | 18 in 18 different sequences |
| Number of true positive hits | 18 in 18 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 0 |
| Number of false negative sequences | 0 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 100.00 % |
| Recall (true positives / (true positives + false negatives)) | 100.00 % |
Comments [info]
| Taxonomic range [info] | Archaea, Prokaryotes (Bacteria) |
| Maximum number of repetitions [info] | 1 |
| Matrix type [info] | protein_domain |
| Scaling database [info] | reversed |
| Author [info] | CJA_Sigrist |
| Feature key [info] | ZN_FING |
| Feature description [info] | RG C-terminal-type |
| Version [info] | 1 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
18 sequences
RGYR1_AERPE (Q9YCB6), RGYR1_SACS2 (Q97ZZ8), RGYR1_SULAC (Q08582), RGYR1_SULTO (Q971T7), RGYR2_AERPE (Q9YC75), RGYR2_SACS2 (Q97ZF5), RGYR2_SULAC (P0DW67), RGYR2_SULTO (Q975P6), RGYRA_NANEQ (Q74MA4), RGYRB_METKA (F1SVH1), RGYR_ARCFU (O29238), RGYR_CALS4 (Q8R979), RGYR_PYRAB (Q9UZ86), RGYR_PYRFU (P95479), RGYR_PYRHO (O58530), RGYR_SACSH (P74759), RGYR_THEKO (Q6F598), RGYR_THEMA (O51934)» more
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| PDB [Detailed view] |
10 PDB
1GKU; 1GL9; 4DDT; 4DDU; 4DDV; 4DDW; 4DDX; 7FSE; 7FSF; 8OFB |