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ProRule PRU00146


General rule information [?]

Accession PRU00146
Dates 12-DEC-2003 (Created)
19-NOV-2022 (Last updated, Version 12)
Data class Domain;
Predictors PROSITE; PS50016; ZF_PHD_2
Name Zinc finger PHD-type
Function Undefined
Scope(s) Eukaryota
Example(s) P55197 (AF10_HUMAN);

Propagated annotation [?]

Keywords [?]

Zinc-finger
case (<Feature:PS50016:4=[CH]> and <Feature:PS50016:7=[CH]> and <Feature:PS50016:28=[CH]> and <Feature:PS50016:31=[CH]>) or (<Feature:PS50016:20=[CH]> and <Feature:PS50016:23=[CH]> and <Feature:PS50016:48=[CH]> and <Feature:PS50016:51=[CH]>)
Zinc
Metal-binding
end case

Cross-references [?]

PROSITE PS01359; ZF_PHD_1; 1;

Features [?]

From: PS50016
Key From To Description Tag Condition FTGroup
case (<Feature:PS50016:4=[C]> and <Feature:PS50016:7=[C]> and <Feature:PS50016:28=[H]> and <Feature:PS50016:31=[C]>) and (<Feature:PS50016:20=[C]> and <Feature:PS50016:23=[C]> and <Feature:PS50016:48=[C]> and <Feature:PS50016:51=[C]>)
ZN_FING from to /note="PHD-type #"
else case (<Feature:PS50016:4=[CH]> and <Feature:PS50016:7=[CH]> and <Feature:PS50016:28=[CH]> and <Feature:PS50016:31=[CH]>) and (<Feature:PS50016:20=[CH]> and <Feature:PS50016:23=[CH]> and <Feature:PS50016:48=[CH]> and <Feature:PS50016:51=[CH]>)
ZN_FING from to /note="PHD-type #; atypical"
else
ZN_FING from to /note="PHD-type #; degenerate"
end case
BINDING 4 4 /ligand="Zn(2+)"
/ligand_id="ChEBI:CHEBI:29105"
/ligand_label="#1"		 [CH] 1
BINDING 7 7 /ligand="Zn(2+)"
/ligand_id="ChEBI:CHEBI:29105"
/ligand_label="#1"		 [CH] 1
BINDING 20 20 /ligand="Zn(2+)"
/ligand_id="ChEBI:CHEBI:29105"
/ligand_label="#2"		 [CH] 2
BINDING 23 23 /ligand="Zn(2+)"
/ligand_id="ChEBI:CHEBI:29105"
/ligand_label="#2"		 [CH] 2
BINDING 28 28 /ligand="Zn(2+)"
/ligand_id="ChEBI:CHEBI:29105"
/ligand_label="#1"		 [CH] 1
BINDING 31 31 /ligand="Zn(2+)"
/ligand_id="ChEBI:CHEBI:29105"
/ligand_label="#1"		 [CH] 1
BINDING 48 48 /ligand="Zn(2+)"
/ligand_id="ChEBI:CHEBI:29105"
/ligand_label="#2"		 [CH] 2
BINDING 51 51 /ligand="Zn(2+)"
/ligand_id="ChEBI:CHEBI:29105"
/ligand_label="#2"		 [CH] 2

Additional information [?]

Size range 34-89 amino acids
Related rules None
Fusion None
Repeats 1-6
Topology Undefined

Copyright

PROSITE is copyrighted by the SIB Swiss Institute of Bioinformatics and distributed under the Creative Commons Attribution-NonCommercial-NoDerivatives (CC BY-NC-ND 4.0) License, see prosite_license.html.



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UniProtKB rule member sequences [?]