PROSITE entry PS50016
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General information about the entry
| Entry name [info] | ZF_PHD_2 |
| Accession [info] | PS50016 |
| Entry type [info] | MATRIX |
| Date [info] |
01-APR-2002 CREATED;
10-MAY-2017 DATA UPDATE; 08-NOV-2023 INFO UPDATE. |
| PROSITE Doc. [info] | PDOC50016 |
| Associated ProRule [info] | PRU00146 |
Name and characterization of the entry
| Description [info] | Zinc finger PHD-type profile. |
| Matrix / Profile [info] |
/GENERAL_SPEC: ALPHABET='ABCDEFGHIKLMNPQRSTVWYZ'; LENGTH=54; /DISJOINT: DEFINITION=PROTECT; N1=4; N2=51; /NORMALIZATION: MODE=1; FUNCTION=LINEAR; R1=1.4800000; R2=0.0089000; TEXT='NScore'; /NORMALIZATION: MODE=-1; FUNCTION=LINEAR; R1=3510.1113281; R2=3.0049100; PRIORITY=1; TEXT='Heuristic 5.0%'; /CUT_OFF: LEVEL=0; SCORE=789; H_SCORE=5881; N_SCORE=8.5; MODE=1; TEXT='!'; /CUT_OFF: LEVEL=-1; SCORE=565; H_SCORE=5208; N_SCORE=6.5; MODE=1; TEXT='?'; /DEFAULT: D=-20; I=-20; B1=-100; E1=-100; MI=-105; MD=-105; IM=-105; DM=-105; ... A B C D E F G H I K L M N P Q R S T V W Y Z /I: B1=0; BI=-105; BD=-105; /M: SY='N'; M= -6, -2, -11, -4, -7, -14, -8, -8, -17, -6, -16, -11, 1, -19, -6, -4, 0, -2, -12, -25, -8, -7; /M: SY='N'; M= -4, -7, -24, -10, -8, -14, -15, -8, -7, -2, -9, -4, -4, -14, -6, -4, -6, -4, -6, -20, -6, -8; /M: SY='F'; M= -10, -19, -20, -23, -16, 17, -21, -12, 2, -16, 3, 3, -16, -23, -16, -13, -11, -4, 2, -9, 12, -16; /M: SY='C'; M= -10, -20, 120, -30, -30, -20, -30, -30, -30, -30, -20, -20, -20, -40, -30, -30, -10, -10, -10, -50, -30, -30; /I: I=-6; MI=-32; MD=-32; IM=-32; /M: SY='Y'; M= -6, -8, -11, -8, -5, -2, -13, -4, -9, -8, -6, -3, -7, -10, -6, -7, -5, -5, -9, -14, 2, -6; D=-6; /I: DM=-32; /M: SY='V'; M= -6, -20, -21, -24, -17, 6, -27, -21, 12, -13, 7, 5, -17, -21, -17, -14, -12, -4, 13, -18, 0, -18; /M: SY='C'; M= -10, -20, 120, -30, -30, -20, -30, -30, -30, -30, -20, -20, -20, -40, -30, -30, -10, -10, -10, -50, -30, -30; /M: SY='G'; M= -5, 2, -19, -1, -5, -17, 6, -8, -24, -6, -19, -14, 6, -18, -6, -5, 1, -8, -19, -26, -16, -5; /M: SY='E'; M= -6, 2, -24, 4, 8, -23, -9, -6, -23, 5, -19, -11, 2, -12, 6, 6, 3, -1, -18, -27, -14, 6; /I: MD=-15; /M: SY='S'; M= -1, -2, -12, -4, 1, -19, -8, -11, -16, -5, -17, -11, 0, -5, -3, -8, 7, 4, -11, -29, -17, -2; D=-2; /I: MD=-15; /M: SY='D'; M= -7, 1, -22, 3, 0, -13, -6, -3, -13, -6, -10, -9, 0, -15, -5, -5, -3, -6, -12, -18, -3, -4; D=-2; /I: MD=-15; /M: SY='D'; M= -6, 5, -17, 6, 6, -18, -8, -5, -17, 2, -15, -11, 4, -7, 2, 0, -1, -6, -15, -22, -13, 4; D=-2; /I: MD=-15; /M: M= -3, -1, -16, 0, -2, -10, -1, -8, -12, -4, -12, -8, -1, -3, -4, -7, -1, -3, -10, -10, -8, -3; D=-2; /I: I=-2; MI=0; IM=0; DM=-15; /M: SY='D'; M= -8, 6, -25, 12, 7, -23, -6, -2, -25, -5, -21, -17, 2, -2, -2, -9, 4, -1, -20, -30, -14, 2; /M: SY='G'; M= -2, 7, -25, 8, 4, -26, 12, -7, -27, -5, -22, -17, 8, -14, -4, -8, 2, -9, -21, -28, -20, 0; /M: SY='E'; M= -6, -1, -23, 1, 4, -18, -16, -11, -18, -1, -15, -12, -3, 0, -2, -5, -4, -6, -16, -24, -14, 1; /M: SY='L'; M= -10, -25, -14, -30, -22, 10, -27, -18, 14, -21, 18, 17, -21, -25, -17, -17, -18, -7, 9, -14, 1, -20; /M: SY='I'; M= -8, -27, -21, -30, -22, 3, -30, -19, 24, -22, 21, 19, -25, -25, -18, -19, -20, -9, 20, -15, -1, -21; /M: SY='Q'; M= -7, -9, -14, -11, -1, -8, -19, -7, -11, -8, -8, -5, -7, -18, 4, -7, -1, -1, -11, -20, -1, 1; /M: SY='C'; M= -10, -20, 120, -30, -30, -20, -30, -30, -30, -30, -20, -20, -20, -40, -30, -30, -10, -10, -10, -50, -30, -30; /M: SY='D'; M= -8, 22, -24, 28, 11, -32, -4, -2, -30, 0, -25, -20, 13, -12, 4, -5, 1, -8, -25, -32, -18, 7; /I: I=-8; MI=0; MD=-30; IM=0; DM=-30; /M: SY='B'; M= -7, 0, -21, 0, -4, -16, -4, -8, -18, -3, -13, -9, -1, -17, -7, -5, -4, -5, -13, -23, -8, -6; /M: SY='C'; M= -10, -20, 120, -30, -30, -20, -30,-120, -30, -30, -20, -20, -20, -40, -30, -30, -10, -10, -10, -50, -30, -30; /I: MD=-29; /M: SY='D'; M= -9, 6, -20, 9, 3, -24, -2, -6, -26, 1, -22, -15, 4, -10, 1, -1, -2, -9, -22, -25, -14, 1; D=-6; /I: I=-8; MI=-29; MD=-29; IM=-29; DM=-29; /M: SY='R'; M= -12, 2, -25, 3, 6, -21, -17, 1, -22, 11, -18, -11, 3, -15, 7, 21, -2, -4, -17, -25, -9, 5; D=-6; /I: DM=-29; /M: SY='W'; M= -2, -17, -30, -18, -14, -11, -5, -17, -18, -9, -20, -14, -14, -11, -11, -13, -8, -10, -17, 29, -3, -11; /M: SY='F'; M= -14, -25, -21, -29, -23, 30, -24, -9, 2, -19, 3, 2, -20, -28, -21, -16, -17, -10, 2, 7, 25, -21; /M: SY='H'; M= -20, 0, -30, 0, 0, -20, -20, 100, -30, -10, -20, 0, 10, -20, 10, 0, -10, -20, -30, -30, 20, 0; /M: SY='Q'; M= -6, -11, -24, -12, -3, -17, -16, -10, -7, -4, -8, -1, -8, -7, 4, -2, -3, -3, -8, -24, -11, -1; /M: M= -7, -2, -24, -3, -1, -11, -15, -6, -13, 0, -13, -8, -1, -16, -4, -4, -3, -3, -10, -21, -3, -3; /M: SY='C'; M= -10, -20, 120, -30, -30, -20, -30, -30, -30, -30, -20, -20, -20, -40, -30, -30, -10, -10, -10, -50, -30, -30; /M: SY='L'; M= -3, -21, -16, -24, -16, 3, -25, -14, 10, -19, 15, 8, -20, -24, -16, -17, -13, -3, 10, -18, 3, -17; /M: SY='G'; M= -5, -3, -25, -4, -3, -23, 2, -10, -17, -6, -15, -7, 0, -11, 2, -7, -1, -6, -16, -26, -16, -1; /M: SY='P'; M= -12, -11, -28, -10, -7, -6, -23, -9, -7, -9, -6, -5, -10, 3, -11, -9, -12, -8, -9, -19, -7, -10; /M: SY='P'; M= -2, -6, -25, -6, -1, -18, -10, -12, -17, -5, -21, -14, -3, 8, -5, -9, 3, 0, -16, -20, -14, -4; /M: M= -5, -8, -25, -7, -2, -13, -14, -10, -11, -3, -8, -5, -8, -7, -4, -6, -8, -8, -10, -21, -7, -4; /M: SY='E'; M= -8, -4, -25, -3, 4, -15, -20, -11, -11, 1, -10, -8, -3, -7, -3, 1, -4, -3, -9, -26, -12, -1; /I: I=-4; MI=0; MD=-15; IM=0; /M: SY='S'; M= -1, -1, -11, 0, 1, -10, -5, -6, -8, -3, -9, -6, -1, 1, -2, -5, 3, 1, -7, -16, -8, -1; D=-1; /I: DM=-15; /M: M= -2, -5, -16, -6, -3, -10, -7, -9, -6, -4, -5, -4, -4, -6, -2, -5, -4, -4, -7, -10, -7, -3; D=-1; /I: DM=-15; /M: SY='A'; M= 1, -4, -19, -5, 0, -15, -10, -10, -10, -3, -7, -5, -5, -8, -3, -5, -3, -4, -8, -18, -11, -2; D=-1; /I: DM=-15; /M: M= -2, -2, -22, -2, -2, -18, -13, -12, -6, -6, -11, -7, -2, 0, -7, -11, -3, -5, -6, -25, -15, -6; D=-1; /I: DM=-15; /M: SY='P'; M= -6, -9, -29, -7, 1, -20, -12, -10, -17, -1, -18, -11, -7, 9, -2, -5, -5, -8, -18, -16, -13, -2; /M: SY='D'; M= -10, 5, -27, 9, 9, -22, -11, -8, -23, 3, -20, -15, 3, -1, 1, 0, 0, -4, -21, -28, -16, 5; /M: SY='G'; M= -5, -4, -24, -3, 0, -17, 1, -10, -17, -6, -15, -10, -1, -16, -5, -5, 0, -6, -12, -25, -14, -3; /M: SY='B'; M= -6, -2, -25, -2, -3, -21, -4, -8, -16, -3, -15, -8, -2, -11, -5, -5, -4, -7, -12, -24, -14, -4; /M: SY='W'; M= -19, -33, -39, -35, -26, 25, -24, -20, -10, -19, -8, -10, -30, -29, -21, -17, -31, -21, -18, 86, 32, -20; /M: SY='L'; M= -9, -18, -16, -21, -14, -1, -25, -12, 2, -10, 3, 2, -14, -22, -9, -6, -9, -4, 2, -16, 3, -13; /M: SY='C'; M= -10, -20, 120, -30, -30, -20, -30, -30, -30, -30, -20, -20, -20, -40, -30, -30, -10, -10, -10, -50, -30, -30; /M: SY='P'; M= -8, -8, -29, -7, -1, -22, -13, -12, -16, -1, -19, -12, -6, 13, -4, -3, -4, -4, -15, -24, -17, -5; /M: SY='R'; M= -7, -6, -21, -8, -2, -12, -11, -5, -15, 1, -10, -7, -2, -19, -4, 5, -7, -8, -12, -22, -7, -4; /M: SY='C'; M= -10, -19, 115, -29, -29, -20, -30, -26, -30, -29, -20, -19, -19, -39, -29, -29, -10, -10, -11, -49, -28, -29; /M: SY='K'; M= -5, 0, -22, 0, 1, -19, -15, -9, -14, 2, -11, -5, -1, -15, 2, 1, -1, 1, -10, -27, -12, 1; /M: SY='K'; M= -8, -3, -14, -6, 0, -15, -18, -9, -15, 1, -17, -10, 1, -6, -3, 0, -2, -4, -14, -27, -12, -2; /M: SY='K'; M= -5, -7, -4, -9, -1, -19, -17, -6, -20, 2, -18, -9, -6, -12, -2, 2, -2, -5, -13, -29, -13, -3; /I: E1=0; IE=-105; DE=-105;» more |
Post-processing [info]
| COMPETES_HIT_WITH | PS51805 |
Numerical results [info]
| Total number of hits | 446 in 341 different sequences |
| Number of true positive hits | 441 in 336 different sequences |
| Number of 'unknown' hits | 0 |
| Number of false positive hits | 5 in 5 different sequences |
| Number of false negative sequences | 139 |
| Number of 'partial' sequences | 0 |
| Precision (true positives / (true positives + false positives)) | 98.88 % |
| Recall (true positives / (true positives + false negatives)) | 76.03 % |
Comments [info]
| Matrix type [info] | protein_domain |
| Scaling database [info] | window20_shuffled |
| Author [info] | K_Hofmann |
| Taxonomic range [info] | Eukaryotes |
| Maximum number of repetitions [info] | 6 |
| Feature key [info] | ZN_FING |
| Feature description [info] | PHD-type |
| Version [info] | 6 |
Cross-references [info]
| UniProtKB/Swiss-Prot True positive sequences |
336 sequences
AF10_HUMAN (P55197), AF10_MOUSE (O54826), AF17_HUMAN (P55198), AIRE_HUMAN (O43918), AIRE_MOUSE (Q9Z0E3), ALFIN_MEDSA (Q40359), ALFL1_ARATH (Q9FFF5), ALFL1_ORYSI (A2Y0Q2), ALFL1_ORYSJ (Q75IR6), ALFL2_ARATH (Q9SRM4), ALFL2_ORYSI (B8B8I3), ALFL2_ORYSJ (Q8H383), ALFL3_ARATH (Q9M2B4), ALFL3_ORYSI (B8AMA8), ALFL3_ORYSJ (Q84TV4), ALFL4_ARATH (O81488), ALFL4_ORYSI (A2XTW9), ALFL4_ORYSJ (Q7XUW3), ALFL5_ARATH (Q5XEM9), ALFL5_ORYSI (A2Y4R8), ALFL5_ORYSJ (Q60DW3), ALFL6_ARATH (Q8S8M9), ALFL6_ORYSI (A2WXR5), ALFL6_ORYSJ (Q7F2Z1), ALFL7_ARATH (Q8LA16), ALFL7_ORYSI (B8ADZ3), ALFL7_ORYSJ (Q6Z7F4), ALFL8_ORYSI (B8BJV8), ALFL8_ORYSJ (Q2R837), ALFL9_ORYSI (B8B8C5), ALFL9_ORYSJ (Q6YTY3), ATG35_KOMPG (C4QVX6), ATX1_ARATH (Q9C5X4), ATX2_ARATH (P0CB22), ATX3_ARATH (Q9M364), ATX4_ARATH (Q9SUE7), ATX5_ARATH (Q8GZ42), ATXR5_ARATH (Q8VZJ1), ATXR5_RICCO (B9RU15), ATXR6_ARATH (Q9FNE9), BAZ1A_HUMAN (Q9NRL2), BAZ1A_MOUSE (O88379), BAZ1A_XENLA (Q8UVR5), BAZ1B_DANRE (A2BIL7), BAZ1B_HUMAN (Q9UIG0), BAZ1B_MOUSE (Q9Z277), BAZ1B_XENLA (A8DZJ1), BAZ2A_HUMAN (Q9UIF9), BAZ2A_MOUSE (Q91YE5), BAZ2A_XENLA (B7ZS37), BAZ2B_CHICK (Q9DE13), BAZ2B_HUMAN (Q9UIF8), BAZ2B_MOUSE (A2AUY4), BAZ2_CAEEL (Q23590), BPTF_HUMAN (Q12830), BRD1_HUMAN (O95696), BRD1_MOUSE (G5E8P1), BRDH_DROME (Q7JVP4), BRPF1_HUMAN (P55201), BRPF1_MOUSE (B2RRD7), BRPF3_HUMAN (Q9ULD4), BRPF3_MOUSE (B2KF05), BYE1_CANGA (Q6FJ00), BYE1_DEBHA (Q6BNY5), BYE1_PICGU (A5DDB7), BYE1_SCHPO (Q9Y7V2), BYE1_YEAS7 (A6ZZW1), BYE1_YEAST (P36106), C3H19_ARATH (Q9SIV5), C3H44_ARATH (Q9SD34), CHD3_CAEEL (Q22516), CHD3_DROME (O16102), CHD3_HUMAN (Q12873), CHD4_HUMAN (Q14839), CHD4_MOUSE (Q6PDQ2), CHD5_HUMAN (Q8TDI0), CHD5_MOUSE (A2A8L1), CHD5_RAT(D3ZD32), CHDM_DROME (O97159), CHR4_ARATH (F4KBP5), CTI6_YEAST (Q08923), CXXC1_BOVIN (Q5EA28), CXXC1_DROME (Q9W352), CXXC1_HUMAN (Q9P0U4), CXXC1_MOUSE (Q9CWW7), DIDO1_HUMAN (Q9BTC0), DIDO1_MOUSE (Q8C9B9), DPF1_CHICK (P58267), DPF1_HUMAN (Q92782), DPF1_MOUSE (Q9QX66), DPF1_RAT(P56163), DPF3_CHICK (P58270), DPF3_DANRE (A9LMC0), DPF3_HUMAN (Q92784), DPF3_MOUSE (P58269), DPFF1_CAEEL (Q09477), EBS_ARATH (F4JL28), ECM5_YEAST (Q03214), EHD3_ORYSJ (Q6ZJM9), FGT1_ARATH (F4IF36), FXL19_HUMAN (Q6PCT2), FXL19_MOUSE (Q6PB97), HAT31_ARATH (Q04996), HAZ1_ORYSJ (Q8H991), HOX1A_MAIZE (P46605), IDM1_ARATH (F4IXE7), ING1_ARATH (Q9LIQ6), ING1_DICDI (Q54PN9), ING1_HUMAN (Q9UK53), ING1_MOUSE (Q9QXV3), ING1_SCHPO (O42871), ING2_ARATH (B3H615), ING2_HUMAN (Q9H160), ING2_MOUSE (Q9ESK4), ING2_SCHPO (O74736), ING3_CHICK (Q5ZK36), ING3_HUMAN (Q9NXR8), ING3_MOUSE (Q8VEK6), ING3_PONAB (Q5RBA1), ING3_RAT(Q498T3), ING3_XENLA (Q7ZX31), ING3_XENTR (Q66KD5), ING4_BOVIN (Q3T095), ING4_CHICK (Q5ZKY4), ING4_HUMAN (Q9UNL4), ING4_MOUSE (Q8C0D7), ING5_DROME (Q9VJY8), ING5_HUMAN (Q8WYH8), ING5_MOUSE (Q9D8Y8), INT12_BOVIN (Q32LL5), INT12_DANRE (Q6IQU7), INT12_DROME (Q9VBB3), INT12_HUMAN (Q96CB8), INT12_MACFA (Q8WNV2), INT12_MOUSE (Q9D168), INT12_PONAB (Q5RCV7), INT12_RAT (Q68FR3), INT12_XENLA (Q6DJM6), INT12_XENTR (Q0V9U1), JADE1_BOVIN (Q5E9T7), JADE1_DANRE (Q803A0), JADE1_HUMAN (Q6IE81), JADE1_MOUSE (Q6ZPI0), JADE1_XENLA (Q6GQJ2), JADE2_HUMAN (Q9NQC1), JADE2_MOUSE (Q6ZQF7), JADE3_DANRE (Q7ZVP1), JADE3_HUMAN (Q92613), JADE3_MOUSE (Q6IE82), JADE3_XENTR (Q0P4S5), JHD1_ASPFU (Q4WHB7), JHD1_CANAL (Q5A847), JHD1_DEBHA (Q6BXJ4), JHD1_EMENI (Q5AW75), JHD1_YARLI (Q6C423), JHD2_YEAST (P47156), KAT6A_HUMAN (Q92794), KAT6A_MOUSE (Q8BZ21), KAT6A_RAT (Q5TKR9), KAT6B_HUMAN (Q8WYB5), KAT6B_MACFA (Q8WML3), KAT6B_MOUSE (Q8BRB7), KD5BB_DANRE (Q6IQX0), KDM2A_HUMAN (Q9Y2K7), KDM2A_MOUSE (P59997), KDM2A_XENTR (Q5U263), KDM2B_HUMAN (Q8NHM5), KDM2B_MOUSE (Q6P1G2), KDM2B_XENLA (Q640I9), KDM5A_HUMAN (P29375), KDM5A_MOUSE (Q3UXZ9), KDM5B_CHICK (Q5F3R2), KDM5B_HUMAN (Q9UGL1), KDM5B_MOUSE (Q80Y84), KDM5C_CANLF (Q38JA7), KDM5C_HUMAN (P41229), KDM5C_MOUSE (P41230), KDM5C_PIG (A1YVX4), KDM5D_CANLF (Q30DN6), KDM5D_HUMAN (Q9BY66), KDM5D_MOUSE (Q62240), KDM5D_PANTR (Q5XUN4), KDM5_CAEBR (Q61T02), KDM5_CAEEL (Q23541), KDM5_DROME (Q9VMJ7), KDM7A_DANRE (Q5RHD1), KDM7A_HUMAN (Q6ZMT4), KDM7A_MOUSE (Q3UWM4), KDM7A_XENTR (Q08D35), KDM7B_DANRE (P0CF52), KMT2A_HUMAN (Q03164), KMT2A_MOUSE (P55200), KMT2B_HUMAN (Q9UMN6), KMT2B_MOUSE (O08550), KMT2C_HUMAN (Q8NEZ4), KMT2C_MOUSE (Q8BRH4), KMT2D_HUMAN (O14686), KMT2D_MOUSE (Q6PDK2), KMT2E_HUMAN (Q8IZD2), KMT2E_MOUSE (Q3UG20), LE418_CAEEL (G5EBZ4), LID2_SCHPO (Q9HDV4), LIN49_CAEEL (Q20318), LIN59_CAEEL (O44757), MBD9_ARATH (Q9SGH2), MIT1_SCHPO (Q9P793), MLO2_SCHPO (Q09329), MSC1_SCHPO (Q9UT79), MTF2_HUMAN (Q9Y483), MTF2_MOUSE (Q02395), MTF2_PONAB (Q5R7T9), NFXL1_ARATH (Q9SY59), NSD1_HUMAN (Q96L73), NSD1_MOUSE (O88491), NSD2_HUMAN (O96028), NSD2_MOUSE (Q8BVE8), NSD3_HUMAN (Q9BZ95), NSD3_MOUSE (Q6P2L6), NSD_DROME (Q8MT36), NTO1_SCHPO (O74759), NTO1_YEAST (Q12311), NU301_CAEEL (Q6BER5), NU301_DROME (Q9W0T1), ORC1A_ARATH (Q710E8), ORC1B_ARATH (Q9SU24), ORC1_ORYSJ (Q5SMU7), ORTH2_ARATH (Q8VYZ0), PAIP2_ARATH (F4KE59), PCL_DROME (Q24459), PF21A_HUMAN (Q96BD5), PF21A_MOUSE (Q6ZPK0), PF21B_HUMAN (Q96EK2), PF21B_MOUSE (Q8C966), PHD1_ARATH (B3H578), PHF10_BOVIN (Q2T9V9), PHF10_DANRE (Q6NWE1), PHF10_HUMAN (Q8WUB8), PHF10_MOUSE (Q9D8M7), PHF10_RAT (Q4V7A6), PHF10_XENLA (Q63ZP1), PHF12_HUMAN (Q96QT6), PHF12_MOUSE (Q5SPL2), PHF14_DANRE (A0A286Y9D1), PHF14_HUMAN (O94880), PHF14_MOUSE (Q9D4H9), PHF19_MOUSE (Q9CXG9), PHF1_HUMAN (O43189), PHF1_MOUSE (Q9Z1B8), PHF1_SCHPO (P87233), PHF2_DANRE (Q6P949), PHF2_DICLA (E6ZGB4), PHF2_HUMAN (O75151), PHF2_MOUSE (Q9WTU0), PHF2_SCHPO (Q09908), PHF3_HUMAN (Q92576), PHF8_DANRE (P0CH95), PHF8_HUMAN (Q9UPP1), PHF8_MOUSE (Q80TJ7), PHO23_YEAST (P50947), PHRF1_HUMAN (Q9P1Y6), PHRF1_MOUSE (A6H619), PHRF1_RAT (Q63625), PKL_ARATH (Q9S775), PRH_ARATH (P48785), PRH_PETCR (P48786), PTM_ARATH (F4JYC8), PYGO1_HUMAN (Q9Y3Y4), PYGO1_MOUSE (Q9D0P5), PYGO2_HUMAN (Q9BRQ0), PYGO_DROME (Q9V9W8), RCO1_YEAST (Q04779), REQUA_XENLA (Q9W638), REQUB_XENLA (Q9W636), REQU_CHICK (P58268), REQU_HUMAN (Q92785), REQU_MOUSE (Q61103), RNO_DROME (Q7YZH1), RNO_DROPS (Q29EQ3), RSF1_HUMAN (Q96T23), SAYP_DROME (Q9VWF2), SCC2_ARATH (A5HEI1), SET1_PLAF7 (C6KTD2), SET3_YEAST (P36124), SET4_YEAST (P42948), SHL_ARATH (Q9FEN9), SNT2_YEAST (P53127), SP110_HUMAN (Q9HB58), SP140_HUMAN (Q13342), SP14L_HUMAN (Q9H930), SPP1_SCHPO (O74508), SPP1_YEAST (Q03012), TAF3_CHICK (Q5F489), TAF3_HUMAN (Q5VWG9), TAF3_MOUSE (Q5HZG4), TAF3_XENLA (Q5EAW9), TIF1A_HUMAN (O15164), TIF1A_MOUSE (Q64127), TIF1B_HUMAN (Q13263), TIF1B_MOUSE (Q62318), TIF1B_RAT (O08629), TRI33_DANRE (Q6E2N3), TRI33_HUMAN (Q9UPN9), TRI33_MOUSE (Q99PP7), TRI33_XENLA (Q56R14), TRI66_HUMAN (O15016), TRI66_MOUSE (Q924W6), TRX1_ORYSJ (Q6K431), TRX_DROME (P20659), TRX_DROVI (Q24742), UBR7_DICDI (Q54DV0), UHRF1_BOVIN (A7E320), UHRF1_DANRE (E7EZF3), UHRF1_HUMAN (Q96T88), UHRF1_MOUSE (Q8VDF2), UHRF1_RAT (Q7TPK1), UHRF1_XENLA (B6CHA3), UHRF1_XENTR (F6UA42), UHRF2_HUMAN (Q96PU4), UHRF2_MOUSE (Q7TMI3), Y3228_ARATH (Q5PNS0), Y8158_DICDI (Q55FD6), YA27_SCHPO (Q09698), YAC5_SCHPO (Q09819), YNG2_CANAL (Q5AHB8), YNG2_CANGA (Q6FSB1), YNG2_DEBHA (Q6BNL6), YNG2_EREGS (Q757W2), YNG2_KLULA (Q6CXN0), YNG2_YARLI (Q6C5V7), YNG2_YEAST (P38806), YQF7_SCHPO (O94400), ZFP1_CAEEL (P34447), ZMY11_HUMAN (Q15326), ZMY11_MOUSE (Q8R5C8), ZMYD8_DROME (Q7KRS9), ZMYD8_HUMAN (Q9ULU4)» more
|
| UniProtKB/Swiss-Prot False negative sequences |
139 sequences
AIPP2_ARATH (F4IYH6), ARID4_ARATH (Q6NQ79), ASH1L_HUMAN (Q9NR48), ASH1L_MOUSE (Q99MY8), ASH1_DROME (Q9VW15), ASH2L_HUMAN (Q9UBL3), ASH2L_MOUSE (Q91X20), ASH2_CAEEL (G5EFZ3), ASH2_DROME (Q94545), ASH2_SCHPO (O60070), ASHR3_ARATH (Q949T8), ASXL1_HUMAN (Q8IXJ9), ASXL1_MOUSE (P59598), ASXL2_CHICK (Q5ZM88), ASXL2_HUMAN (Q76L83), ASXL2_MOUSE (Q8BZ32), ASXL3_HUMAN (Q9C0F0), ASXL3_MOUSE (Q8C4A5), ASX_DROME (Q9V727), BYE1_YARLI (Q6C0K9), CBFA_DICDI (O97101), CTI6_SCHPO (Q1MTR4), EBSL_ARATH (F4JGB7), EDM2_ARATH (F4K3G5), G2E3_CHICK (Q5F4A1), G2E3_HUMAN (Q7L622), G2E3_MACFA (Q4R9C4), G2E3_MOUSE (Q5RJY2), HAC12_ARATH (Q9FWQ5), HAC1_ARATH (Q9C5X9), HAC2_ARATH (Q9FYH1), HAC4_ARATH (Q9LG11), HAC5_ARATH (Q9LE42), HACL1_ORYSJ (Q6YXY2), HACL2_ORYSJ (Q5Z8V7), HACL3_ORYSJ (Q9XHY7), HOP1_SCHPO (Q9P7P2), JHD1_CRYNB (P0CO41), JHD1_CRYNJ (P0CO40), JHD1_EREGS (Q75AL5), JHD1_KLULA (Q6CIC9), JHD1_USTMA (Q4P5U1), JHD1_YEAST (P40034), JMJ17_ARATH (F4I240), JMJ24_ARATH (F4HZD1), KDM4A_HUMAN (O75164), KDM4A_MOUSE (Q8BW72), KDM4A_PONAB (Q5RD88), KDM4B_HUMAN (O94953), KDM4B_MOUSE (Q91VY5), KDM4C_HUMAN (Q9H3R0), KDM4C_MOUSE (Q8VCD7), KDM7_CAEEL (Q9GYI0), LSY13_CAEEL (A3QMD7), MES4_CAEEL (Q9NH52), MMD1_ARATH (Q7X6Y7), MS1_ARATH (Q9FMS5), OBE1_ARATH (Q9S736), OBE2_ARATH (Q9LUB7), OBE3_ARATH (Q94B71), OBE4_ARATH (Q84TI3), ORTH1_ARATH (Q9FKA7), ORTH3_ARATH (Q9FVS2), ORTH4_ARATH (Q9C8E1), ORTH5_ARATH (Q680I0), P20L1_HUMAN (A8MW92), P20L1_MOUSE (Q8CCJ9), P20L1_RAT (Q4V9H5), PF23A_DANRE (Q5BJ10), PF23A_XENLA (Q5HZN9), PF23B_DANRE (Q7SXB5), PF23B_XENLA (Q0IHB0), PH11A_MOUSE (Q8BVM9), PH11L_RAT (Q5I0J8), PHD4_ARATH (Q9FNQ4), PHD5_ARATH (Q9FNQ5), PHD6_ARATH (F4K200), PHF11_BOVIN (Q2HJ93), PHF11_HUMAN (Q9UIL8), PHF11_MOUSE (A6H5X4), PHF11_RAT (Q5I0E2), PHF13_HUMAN (Q86YI8), PHF13_MOUSE (Q8K2W6), PHF19_HUMAN (Q5T6S3), PHF20_HUMAN (Q9BVI0), PHF20_MOUSE (Q8BLG0), PHF23_BOVIN (A5D962), PHF23_HUMAN (Q9BUL5), PHF23_MOUSE (Q8BSN5), PHF23_RAT (Q6AY75), PHF23_XENTR (Q5U5E5), PHF24_HUMAN (Q9UPV7), PHF24_MOUSE (Q80TL4), PHF24_PONAB (Q5R4R7), PHF6_BOVIN (Q08DR0), PHF6_HUMAN (Q8IWS0), PHF6_MOUSE (Q9D4J7), PHF6_PONAB (Q5R5Z2), PHF7_HUMAN (Q9BWX1), PHF7_MOUSE (Q9DAG9), PHF7_RAT(Q6AXW4), PTC1_ORYSJ (Q67V61), PVIP_NICBE (Q84N38), PVIP_PEA(Q84N37), RAG2_CHICK (P25022), RAG2_DANRE (O13034), RAG2_HUMAN (P55895), RAG2_MOUSE (P21784), RAG2_ONCMY (Q91193), RAG2_RABIT (P34089), RAG2_XENLA (Q91830), RAI1_HUMAN (Q7Z5J4), RAI1_MOUSE (Q61818), SET26_CAEEL (Q9U263), SET3_SCHPO (Q10362), SET9_CAEEL (O44498), SETVS_PLAF7 (Q8IE95), SHPRH_HUMAN (Q149N8), SHPRH_MOUSE (Q7TPQ3), SIZ1_ARATH (Q680Q4), SIZ1_ORYSJ (Q6L4L4), SIZ2_ORYSJ (Q6ASW7), SNT2_SCHPO (Q10077), TCF19_HUMAN (Q9Y242), TCF19_MACMU (Q5TM48), TCF19_PANTR (Q7YR48), TCF19_PIG (Q9TSV4), TCF20_HUMAN (Q9UGU0), TCF20_MOUSE (Q9EPQ8), TTA1_ORYSJ (Q10PC5), UBR7_HUMAN (Q8N806), UBR7_MOUSE (Q8BU04), VIL1_ARATH (Q9LHF5), VIL2_ARATH (Q9SUM4), VIL3_ARATH (Q5BPT4), VIN3_ARATH (Q9FIE3), Y1342_ARATH (Q9C810), Y2181_ARATH (Q9ZUA9), YNG1_YEAST (Q08465)» more |
| UniProtKB/Swiss-Prot False positive sequences |
5 sequences
FAP1H_SCHPO (O74853), NFX1_BOVIN (A6QLA0), NFX1_DICDI (Q54BK0), NFX1_HUMAN (Q12986), NFX1_MOUSE (B1AY10)» more |
| PDB [Detailed view] |
285 PDB
1F62; 1FP0; 1MM2; 1MM3; 1WE9; 1WEE; 1WEM; 1WEN; 1WEP; 1WES; 1WEU; 1WEV; 1WEW; 1WIL; 1X4I; 1XWH; 2DX8; 2E6R; 2E6S; 2F6J; 2F6N; 2FSA; 2FUI; 2FUU; 2G6Q; 2JMI; 2JMJ; 2K16; 2K17; 2K1J; 2KE1; 2KFT; 2KGG; 2KGI; 2KU3; 2KU7; 2KWJ; 2KWK; 2KWN; 2KWO; 2KYU; 2L43; 2L5U; 2L75; 2LGG; 2LGK; 2LGL; 2LN0; 2LRI; 2LV9; 2M1R; 2M3H; 2M85; 2MA5; 2MD7; 2MD8; 2MIQ; 2MNY; 2MNZ; 2MUM; 2NAA; 2PNX; 2PUY; 2QIC; 2RI7; 2RO1; 2RSD; 2VNF; 2VP7; 2VPB; 2VPD; 2VPE; 2VPG; 2XB1; 2YQL; 2YSM; 2YT5; 2YYR; 3ASK; 3ASL; 3C6W; 3GL6; 3KQI; 3KV4; 3KV5; 3KV6; 3LQH; 3LQI; 3LQJ; 3N9L; 3N9M; 3N9N; 3N9O; 3N9P; 3N9Q; 3O33; 3O34; 3O35; 3O36; 3O37; 3O70; 3O7A; 3PUQ; 3PUR; 3QZV; 3SHB; 3SOU; 3SOW; 3SOX; 3T6R; 3U5M; 3U5N; 3U5O; 3U5P; 3V43; 3ZPV; 3ZVY; 3ZVZ; 4BBQ; 4BXZ; 4COS; 4GND; 4GNE; 4GNF; 4GNG; 4GY5; 4L58; 4L7X; 4LJN; 4LK9; 4LKA; 4LLB; 4O64; 4Q6F; 4QF2; 4QF3; 4TVR; 4UP0; 4UP5; 4YAB; 4YAD; 4YAT; 4YAX; 4YBM; 4YBS; 4YBT; 4YC9; 4ZQL; 5B73; 5B75; 5B76; 5B77; 5B78; 5B79; 5C11; 5C13; 5CEH; 5DAG; 5DAH; 5ERC; 5H1T; 5H1U; 5H1V; 5HH7; 5I3L; 5K4L; 5MR8; 5OQD; 5SZB; 5SZC; 5T8R; 5TAB; 5TBN; 5TDR; 5TDW; 5U2J; 5V9P; 5V9T; 5VDC; 5WXG; 5WXH; 5XFN; 5XFO; 5XFP; 5XFQ; 5XFR; 5XHT; 5XMY; 5Y1Z; 5Y20; 5YC3; 5YC4; 5Z8L; 5Z8N; 6ASB; 6AZE; 6FAP; 6FHQ; 6FHU; 6FI0; 6FI1; 6FKP; 6G8R; 6GUU; 6IET; 6IEU; 6IIW; 6J2P; 6LQE; 6LQF; 6LSB; 6LTH; 6LTJ; 6MLC; 6MZD; 6MZL; 6O7G; 6OIE; 6Q3M; 6RYR; 6RYU; 6U04; 6VEN; 6VFO; 6WXK; 7CRO; 7CRP; 7CRQ; 7CRR; 7CWH; 7D86; 7D87; 7D8A; 7DUF; 7EBJ; 7EBK; 7EDX; 7EG7; 7EG8; 7EG9; 7EGA; 7EGB; 7EGC; 7EGD; 7EGE; 7EGF; 7EGI; 7EGJ; 7ENA; 7ENC; 7KLO; 7KLR; 7M10; 7MJU; 7UV9; 7VDV; 7VVU; 7VVZ; 7XGA; 7Y0I; 7Y8R; 7YI0; 7YI2; 7YI3; 7YI4; 7YI5; 7ZDD; 7ZEY; 7ZEZ; 7ZMX; 8BD8; 8BD9; 8BDY; 8BPA; 8BPB; 8BPC; 8C60; 8F8Y; 8F8Z; 8GA8; 8GXQ; 8GXS; 8HPO; 8I02; 8I03 » more |