We are deeply saddened by the passing of Amos Bairoch (1957–2025), the creator of PROSITE. We wish to dedicate our latest paper, published shortly before his death, to him. He will always be a source of inspiration to us.
Our deepest condolences go out to his family and friends, and to all those who had the privilege of working with him. Rest in peace, Amos. Your work will live on long after you are gone.
Our deepest condolences go out to his family and friends, and to all those who had the privilege of working with him. Rest in peace, Amos. Your work will live on long after you are gone.
ProRule PRU01343
View rule in raw text format (no links)
PURL: https://purl.expasy.org/prosite/rule/PRU01343
General rule information
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| Accession | PRU01343 |
| Dates | 18-MAY-2022 (Created)
19-NOV-2022 (Last updated, Version 3) |
| Data class | Domain; |
| Predictors |
PROSITE; PS51999; ZF_GRF |
Name | Zinc finger GRF-type |
| Function | GRF-ZFs are nucleic acid interaction modules and in several cases these motifs have been shown to enhance enzymatic activity. |
| Scope(s) |
Eukaryota |
| Example(s) | Q6DCD7; |
Propagated annotation
[?]
Keywords
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| Metal-binding | |
| Zinc | |
| end case | |
| Zinc-finger | |
Gene Ontology
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| case <FTGroup:1> | |
| GO:0008270; Molecular function:zinc ion binding | |
Features
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| From: PS51999 | ||||||||||||
| Key | From | To | Description | Tag | Condition | FTGroup | ||||||
| case <Feature:PS51999:1=[C]> and <Feature:PS51999:3=[HC]> and <Feature:PS51999:26=[C]> and <Feature:PS51999:38=[C]> | ||||||||||||
| ZN_FING | from | to | /note="GRF-type #" | |||||||||
| else case <Feature:PS51999:1=[CH]> and <Feature:PS51999:3=[CH]> and <Feature:PS51999:26=[CH]> and <Feature:PS51999:38=[CH]> | ||||||||||||
| ZN_FING | from | to | /note="GRF-type #; atypical" | |||||||||
| else | ||||||||||||
| ZN_FING | from | to | /note="GRF-type #; degenerate" | |||||||||
| end case | ||||||||||||
| BINDING | 1 | 1 | /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="#1" |
[CH] | 1 | |||||||
| BINDING | 3 | 3 | /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="#1" |
[CH] | 1 | |||||||
| BINDING | 26 | 26 | /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="#1" |
[CH] | 1 | |||||||
| BINDING | 38 | 38 | /ligand="Zn(2+)" /ligand_id="ChEBI:CHEBI:29105" /ligand_label="#1" |
[CH] | 1 | |||||||
Additional information
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| Size range | 35-65 amino acids |
| Related rules |
None |
| Fusion | None |
| Repeats | 1 |
| Topology | Undefined |
PROSITE is copyrighted by the SIB Swiss Institute of Bioinformatics and distributed under the Creative Commons Attribution-NonCommercial-NoDerivatives (CC BY-NC-ND 4.0) License, see prosite_license.html.
UniProtKB rule member sequences
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- UniProtKB/Swiss-Prot sets
Eukaryota [33] All [ 33 ]
- Retrieve set of proteins with 3D structure for this domain