PROSITE documentation PDOC00147

Fumarate lyases signature

Description:

A number of enzymes, belonging to the lyase class, for which fumarate is a substrate have been shown [1,2] to share a short conserved sequence around a methionine which is probably involved in the catalytic activity of this type of enzymes. These enzymes are:

  • Fumarase (EC 4.2.1.2) (fumarate hydratase), which catalyzes the reversible hydration of fumarate to L-malate. There seem to be 2 classes of fumarases: class I are thermolabile dimeric enzymes (as for example: Escherichia coli fumC); class II enzymes are thermostable and tetrameric and are found in prokaryotes (as for example: Escherichia coli fumA and fumB) as well as in eukaryotes. The sequence of the two classes of fumarases are not closely related.
  • Aspartate ammonia-lyase (EC 4.3.1.1) (aspartase), which catalyzes the reversible conversion of aspartate to fumarate and ammonia. This reaction is analogous to that catalyzed by fumarase, except that ammonia rather than water is involved in the trans-elimination reaction.
  • Arginosuccinase (EC 4.3.2.1) (argininosuccinate lyase), which catalyzes the formation of arginine and fumarate from argininosuccinate, the last step in the biosynthesis of arginine.
  • Adenylosuccinase (EC 4.3.2.2) (adenylosuccinate lyase) [3], which catalyzes the eight step in the de novo biosynthesis of purines, the formation of 5'-phosphoribosyl-5-amino-4-imidazolecarboxamide and fumarate from 1-(5- phosphoribosyl)-4-(N-succino-carboxamide). That enzyme can also catalyzes the formation of fumarate and AMP from adenylosuccinate.
  • Pseudomonas putida 3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2) (3-carboxymuconate lactonizing enzyme) (gene pcaB) [4], an enzyme involved in aromatic acids catabolism.

Last update:

December 2004 / Pattern and text revised.

Technical section:

PROSITE method (with tools and information) covered by this documentation:

FUMARATE_LYASES, PS00163Fumarate lyases signature  (PATTERN)
Consensus pattern: G-S-x(2)-M-x-{RS}-K-x-N
Sequences known to belong to this class detected by the pattern: ALL
Other sequence(s) detected in Swiss-Prot: 8
• Retrieve an alignment of Swiss-Prot true positive hits:
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Retrieve the sequence logo from the alignment
Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching PS00163
Retrieve a list of all Swiss-Prot/TrEMBL entries matching PS00163
Scan Swiss-Prot/TrEMBL entries against PS00163
view ligand binding statistics
Matching PDB structures: 1AOS 1AUW 1FUO 1FUP ... [ALL]

References:

1 AuthorsWoods S.A., Schwartzbach S.D., Guest J.R.
TitleTwo biochemically distinct classes of fumarase in Escherichia coli.
SourceBiochim. Biophys. Acta 954:14-26(1988).
PubMed ID3282546
2 AuthorsWoods S.A., Miles J.S., Guest J.R.
SourceFEMS Microbiol. Lett. 51:181-186(1988).
3 AuthorsZalkin H., Dixon J.E.
TitleDe novo purine nucleotide biosynthesis.
SourceProg. Nucleic Acid Res. Mol. Biol. 42:259-287(1992).
PubMed ID1574589
4 AuthorsWilliams S.E., Woolridge E.M., Ransom S.C., Landro J.A., Babbitt P.C., Kozarich J.W.
Title3-Carboxy-cis,cis-muconate lactonizing enzyme from Pseudomonas putida is homologous to the class II fumarase family: a new reaction in the evolution of a mechanistic motif.
SourceBiochemistry 31:9768-9776(1992).
PubMed ID1390752

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