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| PROSITE documentation PDOC00309 |
Ribosomal protein L5 signature
Description:
Ribosomal protein L5 is one of the proteins from the large ribosomal subunit.
In Escherichia coli, L5 is known to be involved in binding 5S RNA to the large
ribosomal subunit. It belongs to a family of ribosomal proteins which, on the
basis of sequence similarities [1,2,3,4], groups:
- Eubacterial L5.
- Algal chloroplast L5.
- Cyanelle L5.
- Archaebacterial L5.
- Mammalian L11.
- Tetrahymena thermophila L21.
- Slime mold L5 (V18).
- Yeast L16 (39A).
- Plants mitochondrial L5.
L5 is a protein of about 180 amino-acid residues. As a signature pattern, we
have selected a conserved region, located in the first third of these
proteins.
Last update:
July 1999 / Pattern and text revised.
Technical section:
PROSITE method (with tools and information) covered by this documentation:
| RIBOSOMAL_L5, PS00358; Ribosomal protein L5 signature (PATTERN) |
| Consensus pattern: |
[LIVM]-x(2)-[LIVM]-[STAVC]-[GE]-[QV]-x(2)-[LIVMA]-x-[STC]-x-[STAG]-[KRH]-x-[STA]
|
| Sequences known to belong to this class detected by the pattern: |
ALL, except for some mitochondrial L5 |
| Other sequence(s) detected in Swiss-Prot: |
2 |
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| Matching PDB structures:
1FFK 1GIY 1IQ4 1JJ2 ... [ALL] |
References:
| 1 |
Authors | Hatakeyama T., Hatakeyama T. |
| Title | Amino acid sequences of the ribosomal proteins HL30 and HmaL5 from the archaebacterium Halobacterium marismortui. |
| Source | Biochim. Biophys. Acta 1039:343-347(1990). |
| PubMed ID | 2198942 |
| 2 |
Authors | Rosendahl G., Andreasen P.H., Kristiansen K. |
| Title | Structure and evolution of the Tetrahymena thermophila gene encoding ribosomal protein L21. |
| Source | Gene 98:161-167(1991). |
| PubMed ID | 2016059 |
| 3 |
Authors | Yang D., Gunther I., Matheson A.T., Auer J., Spicker G., Boeck A. |
| Title | The structure of the gene for ribosomal protein L5 in the archaebacterium Sulfolobus acidocaldarius. |
| Source | Biochimie 73:679-682(1991). |
| PubMed ID | 1840500 |
| 4 |
Authors | Otaka E., Hashimoto T., Mizuta K., Suzuki K. |
| Source | Protein Seq. Data Anal. 5:301-313(1993). |
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