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| PROSITE documentation PDOC00319 |
Phosphoribosylglycinamide formyltransferase active site
Description:
Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) (GART) [1] catalyzes
the third step in de novo purine biosynthesis, the transfer of a formyl group
to 5'-phosphoribosylglycinamide. In higher eukaryotes, GART is part of a
multifunctional enzyme polypeptide that catalyzes three of the steps of purine
biosynthesis. In bacteria, plants and yeast, GART is a monofunctional protein
of about 200 amino-acid residues.
In the Escherichia coli enzyme, an aspartic acid residue has been shown to be
involved in the catalytic mechanism. The region around this active site
residue is well conserved in GART from prokaryotic and eukaryotic sources and
can be used as a signature pattern.
Mammalian formyltetrahydrofolate dehydrogenase (EC 1.5.1.6) [2] is a cytosolic
enzyme responsible for the NADP-dependent decarboxylative reduction of
10-formyltetrahydrofolate into tetrahydrofolate. It is a protein of about
900 amino acids consisting of three domains; the N-terminal domain (200
residues) is structurally related to GARTs.
Escherichia coli methionyl-tRNA formyltransferase (EC 2.1.2.9) (gene fmt) [3]
is the enzyme responsible for modifying the free amino group of the aminoacyl
moiety of methionyl-tRMA(fMet). The central part of fmt seems to be
evolutionary related to GART's active site region.
Last update:
April 2006 / Pattern revised.
Technical section:
PROSITE method (with tools and information) covered by this documentation:
| GART, PS00373; Phosphoribosylglycinamide formyltransferase active site (PATTERN) |
| Consensus pattern: |
G-x-[STMC]-[IVTL]-x-[FYWVQELKR]-[VMAT]-x-[DEVMKAI]-x-[LIVMY]-D-x-G-x(2)-[LIVTYA]-x(6)-[LIVM]
D is the active site residue |
| Sequences known to belong to this class detected by the pattern: |
ALL |
| Other sequence(s) detected in Swiss-Prot: |
NONE |
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| Matching PDB structures:
1C2T 1C3E 1CDD 1CDE ... [ALL] |
References:
| 1 |
Authors | Inglese J., Smith J.M., Benkovic S.J. |
| Title | Active-site mapping and site-specific mutagenesis of glycinamide ribonucleotide transformylase from Escherichia coli. |
| Source | Biochemistry 29:6678-6687(1990). |
| PubMed ID | 2204419 |
| 2 |
Authors | Cook R.J., Lloyd R.S., Wagner C. |
| Title | Isolation and characterization of cDNA clones for rat liver 10-formyltetrahydrofolate dehydrogenase. |
| Source | J. Biol. Chem. 266:4965-4973(1991). |
| PubMed ID | 1848231 |
| 3 |
Authors | Guillon J.-M., Mechulam Y., Schmitter J.-M., Blanquet S., Fayat G. |
| Title | Disruption of the gene for Met-tRNA(fMet) formyltransferase severely impairs growth of Escherichia coli. |
| Source | J. Bacteriol. 174:4294-4301(1992). |
| PubMed ID | 1624424 |
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