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PROSITE documentation PDOC00600

Ribosomal protein S16 signature

Description:

Ribosomal protein S16 is one of the proteins from the small ribosomal subunit. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [1], groups:

  • Eubacterial S16.
  • Algal and plant chloroplast S16.
  • Cyanelle S16.
  • Neurospora crassa mitochondrial S24 (cyt-21).

S16 is a protein of about 100 amino-acid residues. As a signature pattern, we selected a conserved region located in the N-terminal extremity of these proteins.

Last update:

December 2004 / Pattern and text revised.

Technical section:

PROSITE method (with tools and information) covered by this documentation:

RIBOSOMAL_S16, PS00732; Ribosomal protein S16 signature  (PATTERN)
Consensus pattern: [LIVMT]-x-[LIVM]-[KR]-L-[STAK]-R-{E}-G-[AKR]
Sequences known to belong to this class detected by the pattern: ALL
Other sequence(s) detected in Swiss-Prot: 6
• Retrieve an alignment of Swiss-Prot true positive hits:
  Clustal format, color, condensed view  / Clustal format, color  / Clustal format, plain text  / Fasta format
• Retrieve the sequence logo from the alignment
• Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching PS00732
• Retrieve a list of all Swiss-Prot/TrEMBL entries matching PS00732
• Scan Swiss-Prot/TrEMBL entries against PS00732
• view ligand binding statistics
Matching PDB structures: 1M5G 1P6G 1P87 1VS5 ... [ALL]

Reference:

1 AuthorsOtaka E., Hashimoto T., Mizuta K.
SourceProtein Seq. Data Anal. 5:285-300(1993).

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