PROSITE documentation PDOC00705

Uroporphyrinogen decarboxylase signatures

Description:

Uroporphyrinogen decarboxylase (EC 4.1.1.37) (URO-D), the fifth enzyme of the heme biosynthetic pathway, catalyzes the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen [1].

URO-D deficiency is responsible for the Human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).

The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a highly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. We used this region as a signature pattern. A second signature pattern is based on a another well conserved region which is located in the central section of the protein.

Last update:

December 2004 / Patterns and text revised.

Technical section:

PROSITE methods (with tools and information) covered by this documentation:

UROD_1, PS00906Uroporphyrinogen decarboxylase signature 1  (PATTERN)
Consensus pattern: [SP]-[IVCLAM]-W-[LIVMFYC]-[LM]-R-[QR]-[AVS]-G-R
Sequences known to belong to this class detected by the pattern: ALL
Other sequence(s) detected in Swiss-Prot: NONE.
• Retrieve an alignment of Swiss-Prot true positive hits:
  Clustal format, color, condensed view  / Clustal format, color  / Clustal format, plain text  / Fasta format
Retrieve the sequence logo from the alignment
Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching PS00906
Retrieve a list of all Swiss-Prot/TrEMBL entries matching PS00906
Scan Swiss-Prot/TrEMBL entries against PS00906
view ligand binding statistics
Matching PDB structures: 1J93 1JPH 1JPI 1JPK ... [ALL]
UROD_2, PS00907Uroporphyrinogen decarboxylase signature 2  (PATTERN)
Consensus pattern: [LIMF]-[GAVS]-F-[STAGCV]-[STAGC]-x-[PA]-[FWYV]-T-[LIVM]-x(2)-Y-x(2,3)-[ADE]-[GK]
Sequences known to belong to this class detected by the pattern: ALL
Other sequence(s) detected in Swiss-Prot: NONE.
• Retrieve an alignment of Swiss-Prot true positive hits:
  Clustal format, color, condensed view  / Clustal format, color  / Clustal format, plain text  / Fasta format
Retrieve the sequence logo from the alignment
Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching PS00907
Retrieve a list of all Swiss-Prot/TrEMBL entries matching PS00907
Scan Swiss-Prot/TrEMBL entries against PS00907
view ligand binding statistics
Matching PDB structures: 1J93 1JPH 1JPI 1R3Q ... [ALL]

Reference:

1 AuthorsGarey J.R., Labbe-Bois R., Chelstowska A., Rytka J., Harrison L., Kushner J., Labbe P.
TitleUroporphyrinogen decarboxylase in Saccharomyces cerevisiae. HEM12 gene sequence and evidence for two conserved glycines essential for enzymatic activity.
SourceEur. J. Biochem. 205:1011-1016(1992).
PubMed ID1576986

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