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| PROSITE documentation PDOC00705 |
Uroporphyrinogen decarboxylase signatures
Description:
Uroporphyrinogen decarboxylase (EC 4.1.1.37) (URO-D), the fifth enzyme of the
heme biosynthetic pathway, catalyzes the sequential decarboxylation of the
four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen [1].
URO-D deficiency is responsible for the Human genetic diseases familial
porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
The sequence of URO-D has been well conserved throughout evolution. The best
conserved region is located in the N-terminal section; it contains a highly
conserved hexapeptide. There are two arginine residues in this hexapeptide
which could be involved in the binding, via salt bridges, to the carboxyl
groups of the propionate side chains of the substrate. We used this region as
a signature pattern. A second signature pattern is based on a another well
conserved region which is located in the central section of the protein.
Last update:
December 2004 / Patterns and text revised.
Technical section:
PROSITE methods (with tools and information) covered by this documentation:
| UROD_1, PS00906; Uroporphyrinogen decarboxylase signature 1 (PATTERN) |
| Consensus pattern: |
[SP]-[IVCLAM]-W-[LIVMFYC]-[LM]-R-[QR]-[AVS]-G-R
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| Sequences known to belong to this class detected by the pattern: |
ALL |
| Other sequence(s) detected in Swiss-Prot: |
NONE. |
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| Matching PDB structures:
1J93 1JPH 1JPI 1JPK ... [ALL] |
| UROD_2, PS00907; Uroporphyrinogen decarboxylase signature 2 (PATTERN) |
| Consensus pattern: |
[LIMF]-[GAVS]-F-[STAGCV]-[STAGC]-x-[PA]-[FWYV]-T-[LIVM]-x(2)-Y-x(2,3)-[ADE]-[GK]
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| Sequences known to belong to this class detected by the pattern: |
ALL |
| Other sequence(s) detected in Swiss-Prot: |
NONE. |
|
|
|
| Matching PDB structures:
1J93 1JPH 1JPI 1R3Q ... [ALL] |
Reference:
| 1 |
Authors | Garey J.R., Labbe-Bois R., Chelstowska A., Rytka J., Harrison L., Kushner J., Labbe P. |
| Title | Uroporphyrinogen decarboxylase in Saccharomyces cerevisiae. HEM12 gene sequence and evidence for two conserved glycines essential for enzymatic activity. |
| Source | Eur. J. Biochem. 205:1011-1016(1992). |
| PubMed ID | 1576986 |
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