PROSITE documentation PDOC00741

Transaldolase signatures

Description:

Transaldolase (EC 2.2.1.2) catalyzes the reversible transfer of a three-carbon ketol unit from sedoheptulose 7-phosphate to glyceraldehyde 3-phosphate to form erythrose 4-phosphate and fructose 6-phosphate. This enzyme, together with transketolase, provides a link between the glycolytic and pentose-phosphate pathways. Transaldolase is an enzyme of about 34 Kd whose sequence has been well conserved throughout evolution. A lysine has been implicated [1] in the catalytic mechanism of the enzyme; it acts as a nucleophilic group that attacks the carbonyl group of fructose-6-phosphate.

Transaldolase is evolutionary related [2] to a bacterial protein of about 20 Kd (known as talC in Escherichia coli), whose exact function is not yet known.

We developed two signature patterns for these proteins. The first, located in the N-terminal section, contains a perfectly conserved pentapeptide; the second, includes the active site lysine.

Last update:

December 2004 / Patterns and text revised.

Technical section:

PROSITE methods (with tools and information) covered by this documentation:

TRANSALDOLASE_1, PS01054Transaldolase signature 1  (PATTERN)
Consensus pattern: [DGH]-[IVSAC]-T-[ST]-N-P-[STA]-[LIVMF](2)
Sequences known to belong to this class detected by the pattern: ALL
Other sequence(s) detected in Swiss-Prot: 1.
• Retrieve an alignment of Swiss-Prot true positive hits:
  Clustal format, color, condensed view  / Clustal format, color  / Clustal format, plain text  / Fasta format
Retrieve the sequence logo from the alignment
Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching PS01054
Retrieve a list of all Swiss-Prot/TrEMBL entries matching PS01054
Scan Swiss-Prot/TrEMBL entries against PS01054
view ligand binding statistics
Matching PDB structures: 1F05 1I2O 1I2P 1I2Q ... [ALL]
TRANSALDOLASE_2, PS00958Transaldolase active site  (PATTERN)
Consensus pattern: [LIVMA]-x-[LIVM]-K-[LIVM]-[PAS]-x-[STC]-x-[DENQPAS]-[GC]-[LIVM]-x-[AGV]-x(0,1)-[QEKRSTH]-x-[LIVMF]
K is the active site residue
Sequences known to belong to this class detected by the pattern: ALL
Other sequence(s) detected in Swiss-Prot: NONE.
• Retrieve an alignment of Swiss-Prot true positive hits:
  Clustal format, color, condensed view  / Clustal format, color  / Clustal format, plain text  / Fasta format
Retrieve the sequence logo from the alignment
Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching PS00958
Retrieve a list of all Swiss-Prot/TrEMBL entries matching PS00958
Scan Swiss-Prot/TrEMBL entries against PS00958
view ligand binding statistics
Matching PDB structures: 1F05 1I2N 1I2O 1I2P ... [ALL]

References:

1 AuthorsMiosga T., Schaaff-Gerstenschlaeger I., Franken E., Zimmermann F.K.
TitleLysine144 is essential for the catalytic activity of Saccharomyces cerevisiae transaldolase.
SourceYeast 9:1241-1249(1993).
PubMed ID8109173
2 AuthorsReizer J., Reizer A., Saier M.H. Jr.
TitleNovel phosphotransferase system genes revealed by bacterial genome analysis -- a gene cluster encoding a unique Enzyme I and the proteins of a fructose-like permease system.
SourceMicrobiology 141:961-971(1995).
PubMed ID7773398

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