PROSITE documentation PDOC00899

Ribosomal protein L21 signature

Description:

Ribosomal protein L21 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L21 is known to bind to the 23S rRNA in the presence of L20. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities, groups:

  • Eubacterial L21.
  • Marchantia polymorpha chloroplast L21.
  • Cyanelle L21.
  • Spinach chloroplast L21 (nuclear-encoded).

Eubacterial L21 is a protein of about 100 amino-acid residues, the mature form of the spinach chloroplast L21 has 200 residues. As a signature pattern, we selected a conserved region located in the C-terminal section of these proteins.

Last update:

December 2004 / Pattern and text revised.

Technical section:

PROSITE method (with tools and information) covered by this documentation:

RIBOSOMAL_L21, PS01169Ribosomal protein L21 signature  (PATTERN)
Consensus pattern: [IVTL]-x(3)-[KR]-x(3)-[KRQ]-[KT]-x(6)-G-[HFY]-[RK]-[RQT]-x(2)-[STL]
Sequences known to belong to this class detected by the pattern: ALL
Other sequence(s) detected in Swiss-Prot: NONE
• Retrieve an alignment of Swiss-Prot true positive hits:
  Clustal format, color, condensed view  / Clustal format, color  / Clustal format, plain text  / Fasta format
Retrieve the sequence logo from the alignment
Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching PS01169
Retrieve a list of all Swiss-Prot/TrEMBL entries matching PS01169
Scan Swiss-Prot/TrEMBL entries against PS01169
view ligand binding statistics
Matching PDB structures: 1VS6 1VS8 1VT2 2AW4 ... [ALL]

Reference:

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