Entry: PS00023

General information about the entry
Entry name FN2_1
Accession number PS00023
Entry type PATTERN
Date APR-1990 (CREATED); DEC-2004 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00022
Name and characterization of the entry
DescriptionFibronectin type-II collagen-binding domain signature.
Pattern C-x(2)-P-F-x-[FYWIV]-x(7)-C-x(8,10)-W-C-x(4)-[DNSR]-[FYW]-x(3,5)-[FYW]-x- [FYWI]-C.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 86 hits in 55 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 86 hits in 55 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 0
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 1
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 100.00 %
Comments
  • Taxonomic range: Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 3
  • `Interesting' site in the pattern: 1,disulfide
  • `Interesting' site in the pattern: 8,disulfide
  • `Interesting' site in the pattern: 11,disulfide
  • `Interesting' site in the pattern: 19,disulfide
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
BSPH1_HUMAN (Q075Z2), BSPH1_MOUSE (Q3UW26), ESPB1_CANFA (Q9GL25), 
ESPB1_HUMAN (Q96BH3), ESPB1_PIG   (Q7YR83), FA12_BOVIN  (P98140), 
FA12_CAVPO  (Q04962), FA12_HUMAN  (P00748), FA12_MOUSE  (Q80YC5), 
FA12_PIG    (O97507), FA12_RAT    (D3ZTE0), FINC_BOVIN  (P07589), 
FINC_HUMAN  (P02751), FINC_MOUSE  (P11276), FINC_RAT    (P04937), 
HGFA_CANFA  (Q6QNF4), HGFA_HUMAN  (Q04756), HGFA_MOUSE  (Q9R098), 
LY75_HUMAN  (O60449), LY75_MESAU  (Q920P9), LY75_MOUSE  (Q60767), 
MMP2_BOVIN  (Q9GLE5), MMP2_CHICK  (Q90611), MMP2_HUMAN  (P08253), 
MMP2_MOUSE  (P33434), MMP2_RABIT  (P50757), MMP2_RAT    (P33436), 
MMP9_BOVIN  (P52176), MMP9_CANFA  (O18733), MMP9_HUMAN  (P14780), 
MMP9_MOUSE  (P41245), MMP9_RABIT  (P41246), MMP9_RAT    (P50282), 
MPRI_BOVIN  (P08169), MPRI_HUMAN  (P11717), MPRI_MOUSE  (Q07113), 
MRC1_HUMAN  (P22897), MRC1_MOUSE  (Q61830), MRC2_HUMAN  (Q9UBG0), 
MRC2_MOUSE  (Q64449), MRC2_RAT    (Q4TU93), PB1_PIG     (P80964), 
PLA2R_BOVIN (P49259), PLA2R_HUMAN (Q13018), PLA2R_MOUSE (Q62028), 
PLA2R_PONAB (Q5R880), PLA2R_RABIT (P49260), SE1L1_HUMAN (Q9UBV2), 
SE1L1_MESAU (Q9ESM7), SE1L1_MOUSE (Q9Z2G6), SE1L1_RAT   (Q80Z70), 
SFP1_BOVIN  (P02784), SFP3_BOVIN  (P04557), SFP4_BOVIN  (P81019), 
SP1_HORSE   (P81121)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
SFP1_BOSIN  (B3EWK6)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1CK7; 1CXW; 1E88; 1E8B; 1EAK; 1GXD; 1H8P; 1J7M; 1KS0; 1L6J; 1LKG; 1PDC; 1QO6; 2CEB; 2CEC; 2FN2; 2V5O; 2V5P; 3M7P; 3MQL;

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