Entry: PS00025

General information about the entry

Entry name [info] P_TREFOIL_1
Accession [info] PS00025
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); DEC-2004 (DATA UPDATE); MAR-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC00024

Name and characterization of the entry

Description [info] P-type 'Trefoil' domain signature.
Pattern [info]

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_05 which contains 548'454 sequence entries.

Total number of hits 59 in 43 different sequences
Number of true positive hits 59 in 43 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 8
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 88.06 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 6
Site [info] disulfide at position 3
Site [info] disulfide at position 9
Site [info] disulfide at position 11
Site [info] disulfide at position 12
Version [info] 1

Cross-references [info]

True positive sequences
43 sequences

LYAG_BOVIN  (Q9MYM4), LYAG_HUMAN  (P10253), LYAG_MOUSE  (P70699), 
LYAG_PONAB  (Q5R7A9), LYAG_RAT    (Q6P7A9), MGA_HUMAN   (O43451), 
MUC1_XENLA  (Q05049), SUIS_HUMAN  (P14410), SUIS_RABIT  (P07768), 
SUIS_RAT    (P23739), SUIS_SUNMU  (O62653), TFF1_CANFA  (Q863T4), 
TFF1_HUMAN  (P04155), TFF1_MOUSE  (Q08423), TFF1_RAT    (Q63467), 
TFF2_CANFA  (Q863J2), TFF2_HUMAN  (Q03403), TFF2_MOUSE  (Q03404), 
TFF2_PIG    (P01359), TFF2_RAT    (Q09030), TFF3_BOVIN  (A8YXX7), 
TFF3_CANFA  (Q863B4), TFF3_FELCA  (B4X8D9), TFF3_HUMAN  (Q07654), 
TFF3_MOUSE  (Q62395), TFF3_PIG    (Q29183), TFF3_RAT    (Q03191), 
XP1_XENLA   (Q00222), XP2_XENLA   (P17437), XP4_XENLA   (Q00223), 
ZP1_HUMAN   (P60852), ZP1_MOUSE   (Q62005), ZP1_RABIT   (I6M4H4), 
ZP1_RAT     (O54766), ZP4_BOVIN   (Q9BH11), ZP4_FELCA   (P48834), 
ZP4_HUMAN   (Q12836), ZP4_PIG     (Q07287), ZP4_RABIT   (Q00193), 
ZP4_RAT     (Q8CH34)
» More

False negative sequences
8 sequences

MGAL_HUMAN  (Q2M2H8), TM190_BOVIN (E1BJD3), TM190_CANFA (E2R0A5), 
TM190_HUMAN (Q8WZ59), TM190_MOUSE (Q9D2E9)
» More

[Detailed view]
20 PDB

1E9T; 1HI7; 1PCP; 1PE3; 1POS; 1PS2; 1PSP; 2PSP; 2QLY; 2QMJ; 3CTT; 3L4T; 3L4U; 3L4V; 3L4W; 3L4X; 3L4Y; 3L4Z; 3LPO; 3LPP
» More

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