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Entry: PS00025

General information about the entry

Entry name [info] P_TREFOIL_1
Accession [info] PS00025
Entry type [info] PATTERN
Date [info] 01-APR-1990 CREATED; 01-DEC-2004 DATA UPDATE; 22-NOV-2017 INFO UPDATE.
PROSITE Doc. [info] PDOC00024

Name and characterization of the entry

Description [info] P-type 'Trefoil' domain signature.
Pattern [info]

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2017_11 which contains 556'196 sequence entries.

Total number of hits 59 in 43 different sequences
Number of true positive hits 59 in 43 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 8
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 88.06 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 6
Site [info] disulfide at position 3
Site [info] disulfide at position 9
Site [info] disulfide at position 11
Site [info] disulfide at position 12
Version [info] 1

Cross-references [info]

True positive sequences
43 sequences

LYAG_BOVIN  (Q9MYM4    ), LYAG_HUMAN  (P10253    ), LYAG_MOUSE  (P70699    ), 
LYAG_PONAB  (Q5R7A9    ), LYAG_RAT    (Q6P7A9    ), MGA_HUMAN   (O43451    ), 
MLRP1_ACRMI (B3EWZ5    ), MLRP2_ACRMI (B3EWZ6    ), MUA1_XENLA  (P10667    ), 
MUC1_XENLA  (Q05049    ), SUIS_HUMAN  (P14410    ), SUIS_RABIT  (P07768    ), 
SUIS_RAT    (P23739    ), SUIS_SUNMU  (O62653    ), TFF1_CANLF  (Q863T4    ), 
TFF1_HUMAN  (P04155    ), TFF1_MOUSE  (Q08423    ), TFF1_RAT    (Q63467    ), 
TFF2_CANLF  (Q863J2    ), TFF2_HUMAN  (Q03403    ), TFF2_MOUSE  (Q03404    ), 
TFF2_PIG    (P01359    ), TFF2_RAT    (Q09030    ), TFF3_BOVIN  (A8YXX7    ), 
TFF3_CANLF  (Q863B4    ), TFF3_FELCA  (B4X8D9    ), TFF3_HUMAN  (Q07654    ), 
TFF3_MOUSE  (Q62395    ), TFF3_PIG    (Q29183    ), TFF3_RAT    (Q03191    ), 
XP1_XENLA   (Q00222    ), XP2_XENLA   (P17437    ), XP4_XENLA   (Q00223    ), 
ZP1_HUMAN   (P60852    ), ZP1_MOUSE   (Q62005    ), ZP1_RABIT   (I6M4H4    ), 
ZP1_RAT     (O54766    ), ZP4_BOVIN   (Q9BH11    ), ZP4_FELCA   (P48834    ), 
ZP4_HUMAN   (Q12836    ), ZP4_PIG     (Q07287    ), ZP4_RABIT   (Q00193    ), 
ZP4_RAT     (Q8CH34    )
» more

False negative sequences
8 sequences

FMR1N_HUMAN (Q8N0W7    ), FMR1N_MOUSE (Q80ZA7    ), FYV1_DICDI  (B0G126    ), 
MGAL_HUMAN  (Q2M2H8    ), TM190_BOVIN (E1BJD3    ), TM190_CANLF (E2R0A5    ), 
TM190_HUMAN (Q8WZ59    ), TM190_MOUSE (Q9D2E9    )
» more

[Detailed view]
20 PDB

1E9T; 1HI7; 1PCP; 1PE3; 1POS; 1PS2; 1PSP; 2PSP; 2QLY; 2QMJ; 3CTT; 3L4T; 3L4U; 3L4V; 3L4W; 3L4X; 3L4Y; 3L4Z; 3LPO; 3LPP
» more

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