Entry: PS00025

General information about the entry

Entry name [info] P_TREFOIL_1
Accession [info] PS00025
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); DEC-2004 (DATA UPDATE); MAR-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00024

Name and characterization of the entry

Description [info] P-type 'Trefoil' domain signature.
Pattern [info]

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_04 which contains 550'960 sequence entries.

Total number of hits 59 in 43 different sequences
Number of true positive hits 59 in 43 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 8
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 88.06 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 6
Site [info] disulfide at position 3
Site [info] disulfide at position 9
Site [info] disulfide at position 11
Site [info] disulfide at position 12
Version [info] 1

Cross-references [info]

True positive sequences
43 sequences

LYAG_BOVIN  (Q9MYM4), LYAG_HUMAN  (P10253), LYAG_MOUSE  (P70699), 
LYAG_PONAB  (Q5R7A9), LYAG_RAT    (Q6P7A9), MGA_HUMAN   (O43451), 
MUC1_XENLA  (Q05049), SUIS_HUMAN  (P14410), SUIS_RABIT  (P07768), 
SUIS_RAT    (P23739), SUIS_SUNMU  (O62653), TFF1_CANLF  (Q863T4), 
TFF1_HUMAN  (P04155), TFF1_MOUSE  (Q08423), TFF1_RAT    (Q63467), 
TFF2_CANLF  (Q863J2), TFF2_HUMAN  (Q03403), TFF2_MOUSE  (Q03404), 
TFF2_PIG    (P01359), TFF2_RAT    (Q09030), TFF3_BOVIN  (A8YXX7), 
TFF3_CANLF  (Q863B4), TFF3_FELCA  (B4X8D9), TFF3_HUMAN  (Q07654), 
TFF3_MOUSE  (Q62395), TFF3_PIG    (Q29183), TFF3_RAT    (Q03191), 
XP1_XENLA   (Q00222), XP2_XENLA   (P17437), XP4_XENLA   (Q00223), 
ZP1_HUMAN   (P60852), ZP1_MOUSE   (Q62005), ZP1_RABIT   (I6M4H4), 
ZP1_RAT     (O54766), ZP4_BOVIN   (Q9BH11), ZP4_FELCA   (P48834), 
ZP4_HUMAN   (Q12836), ZP4_PIG     (Q07287), ZP4_RABIT   (Q00193), 
ZP4_RAT     (Q8CH34)
» more

False negative sequences
8 sequences

MGAL_HUMAN  (Q2M2H8), TM190_BOVIN (E1BJD3), TM190_CANLF (E2R0A5), 
TM190_HUMAN (Q8WZ59), TM190_MOUSE (Q9D2E9)
» more

[Detailed view]
20 PDB

1E9T; 1HI7; 1PCP; 1PE3; 1POS; 1PS2; 1PSP; 2PSP; 2QLY; 2QMJ; 3CTT; 3L4T; 3L4U; 3L4V; 3L4W; 3L4X; 3L4Y; 3L4Z; 3LPO; 3LPP
» more

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