Entry: PS00042

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General information about the entry

Entry name [info] HTH_CRP_1
Accession [info] PS00042
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); APR-2006 (DATA UPDATE); JUL-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00041

Name and characterization of the entry

Description [info] Crp-type HTH domain signature.
Pattern [info]
[LIVM]-[STAG]-[RHNWM]-x(2)-[LIM]-[GA]-x-[LIVMFYAS]-[LIVSC]-[GA]-x-
[STACN]-x(2)-[MST]-x(1,2)-[GSTN]-R-x-[LIVMF]-x(2)-[LIVMF].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_08 which contains 546'238 sequence entries.


Total number of hits 56 in 56 different sequences
Number of true positive hits 55 in 55 different sequences
Number of 'unknown' hits
Number of false positive hits 1
Number of false negative sequences 23
Number of 'partial' sequences 3
Precision (true positives / (true positives + false positives)) 98.21 %
Recall (true positives / (true positives + false negatives)) 70.51 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
55 sequences

AADR_RHOPA  (Q01980), ANR_PSEAE   (P23926), ANR_PSEPH   (O85222), 
BTR_BORPE   (Q08530), CLP_XANAC   (Q8PQ45), CLP_XANC5   (Q3BYB3), 
CLP_XANC8   (Q4UZF6), CLP_XANCB   (B0RN01), CLP_XANCP   (P22260), 
CLP_XANOM   (Q2NYD9), CLP_XANOP   (B2SL05), CLP_XANOR   (Q5GV61), 
CRP_ECO57   (P0ACK0), CRP_ECOL6   (P0ACJ9), CRP_ECOLI   (P0ACJ8), 
CRP_ENTAE   (P0A2T7), CRP_HAEIN   (P29281), CRP_PASMU   (O05689), 
CRP_SALTY   (P0A2T6), CRP_SHIFL   (P0ACK1), CYSR_SYNE7  (P27369), 
CYSR_SYNY3  (Q55854), ETRA_SHEON  (P46148), FIXK_AZOC5  (P26488), 
FIXK_BRADU  (P29286), FIXK_RHIME  (P13295), FLP_LACCA   (P29284), 
FNRA_PSEST  (P47200), FNRL_RHOS4  (P51007), FNRN_RHILV  (P24290), 
FNR_AGGAC   (Q9EXQ1), FNR_BACSU   (P46908), FNR_ECO57   (P0A9E7), 
FNR_ECOL6   (P0A9E6), FNR_ECOLI   (P0A9E5), FNR_HAEIN   (P45199), 
FNR_KLEOX   (Q9AQ50), FNR_PASMU   (Q9CMY2), FNR_SALMS   (P0A2T9), 
FNR_SALTI   (Q8Z787), FNR_SALTY   (P0A2T8), FNR_SHIDY   (Q9LA24), 
FNR_SHIFL   (P0A9E8), FNR_VIBC3   (A5F890), FNR_VIBCH   (P0C6D0), 
FNR_YERPE   (Q8ZE82), HLYX_ACTPL  (P23619), NTCA_ANAVT  (P0A4U7), 
NTCA_NOSS1  (P0A4U6), NTCA_SYNE7  (P29283), NTCA_SYNY3  (P33779), 
PRFA_LISMO  (P22262), VFR_PSEAE   (P55222), YCF28_PORPU (P51342), 
YCF28_PYRYE (Q1XDE5)
» More

UniProtKB/Swiss-Prot
False negative sequences
23 sequences

ARCR_STAA1  (A7X715), ARCR_STAA2  (A6U515), ARCR_STAA3  (Q2FDM8), 
ARCR_STAA8  (Q2FUY1), ARCR_STAA9  (A5IW58), ARCR_STAAB  (Q2YWH5), 
ARCR_STAAC  (Q5HCR6), ARCR_STAAE  (A6QKC0), ARCR_STAAM  (Q99R06), 
ARCR_STAAN  (Q7A381), ARCR_STAAR  (Q6GDH1), ARCR_STAAS  (Q6G643), 
ARCR_STAAT  (A8Z5D0), ARCR_STAAW  (Q8NUK9), ARCR_STAEQ  (Q5HKU6), 
ARCR_STAES  (Q8CML2), ARCR_STAHJ  (Q4L9J7), CMR_MYCTO   (P9WMH4), 
CMR_MYCTU   (P9WMH5), CRP_MYCTO   (P9WMH2), CRP_MYCTU   (P9WMH3), 
YEIL_ECO57  (P0A9F0), YEIL_ECOLI  (P0A9E9)
» More

UniProtKB/Swiss-Prot
'Partial' sequences
3 sequences

FNR_AGGAP   (Q47948), FNR_CAPOD   (Q46158), FNR_CAPSP   (Q46159)

		
UniProtKB/Swiss-Prot
False positive sequences
1 sequence

Y4FQ_RHISN  (P55455)

		
PDB
[Detailed view]
50 PDB

1CGP; 1G6N; 1HW5; 1I5Z; 1I6X; 1J59; 1LB2; 1O3Q; 1O3R; 1O3S; 1O3T; 1RUN; 1RUO; 1ZRC; 1ZRD; 1ZRE; 1ZRF; 2BGC; 2CGP; 2GZW; 2OZ6; 2WC2; 2XGX; 2XHK; 2XKO; 2XKP; 3FWE; 3HIF; 3IWZ; 3IYD; 3KCC; 3LA2; 3LA3; 3LA7; 3N4M; 3QOP; 3RDI; 3ROU; 3RPQ; 3RYP; 3RYR; 4BH9; 4BHP; 4FT8; 4HZF; 4I01; 4I02; 4I09; 4I0A; 4I0B
» More

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