Entry: PS00047

General information about the entry

Entry name [info] HISTONE_H4
Accession [info] PS00047
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); APR-1990 (DATA UPDATE); OCT-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC00046

Name and characterization of the entry

Description [info] Histone H4 signature.
Pattern [info]

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_11 which contains 549'832 sequence entries.

Total number of hits 122 in 122 different sequences
Number of true positive hits 104 in 104 different sequences
Number of 'unknown' hits 0
Number of false positive hits 18 in 18 different sequences
Number of false negative sequences 4
Number of 'partial' sequences 4
Precision (true positives / (true positives + false positives)) 85.25 %
Recall (true positives / (true positives + false negatives)) 96.30 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

True positive sequences
104 sequences

H41_ASHGO   (Q757K0), H41_EMENI   (P23750), H41_PENFN   (Q711M0), 
H41_TETPY   (P02310), H41_WHEAT   (P62785), H42_ASHGO   (Q75AX1), 
H42_EMENI   (P23751), H42_PENFN   (Q8NIQ8), H42_TETPY   (P69151), 
H42_WHEAT   (P62786), H48_CHICK   (P70081), H4_ACRAS    (P84048), 
H4_ACRFO    (P35059), H4_AGABI    (P62793), H4_APIME    (P91849), 
H4_APLCA    (Q8MTV8), H4_ARATH    (P59259), H4_ASCSU    (Q27443), 
H4_ASEAQ    (P84047), H4_ASPFU    (Q7LKT3), H4_ASPOR    (Q76MU7), 
H4_BLAAD    (Q8J1L3), H4_BOVIN    (P62803), H4_CAEEL    (P62784), 
H4_CAIMO    (P62800), H4_CANGA    (Q8NIG3), H4_CAPAN    (Q71V09), 
H4_CHAVR    (Q7KQD1), H4_CHEMJ    (Q6PMI5), H4_CHICK    (P62801), 
H4_CHITH    (P84046), H4_CHLRE    (P50566), H4_DENKL    (Q6LAF1), 
H4_DIAPU    (P91882), H4_DICDI    (Q76NW2), H4_DROER    (P84041), 
H4_DROHY    (P84042), H4_DROMA    (Q76FE7), H4_DROME    (P84040), 
H4_DROOR    (Q76FF1), H4_DROSE    (Q76FD9), H4_DROSI    (P84043), 
H4_DROTE    (Q76FF5), H4_DROYA    (P84044), H4_EIMTE    (Q8T7J8), 
H4_EUCGL    (Q6WZ83), H4_EUPCR    (P80739), H4_FLATR    (Q6LAF3), 
H4_HOLTU    (P62776), H4_HUMAN    (P62805), H4_LITVA    (P83865), 
H4_LOLTE    (P62887), H4_LYTPI    (P62782), H4_MACFA    (Q4R362), 
H4_MAIZE    (P62787), H4_MASBA    (Q9U7D0), H4_MEDSA    (P62789), 
H4_MORAP    (Q9HDF5), H4_MOUSE    (P62806), H4_MYRRU    (P84049), 
H4_MYTCA    (Q6WV73), H4_MYTCH    (Q6WV74), H4_MYTED    (Q7K8C0), 
H4_MYTGA    (Q6WV90), H4_MYTTR    (Q6WV72), H4_NEUCR    (P04914), 
H4_OIKDI    (Q8I0Y4), H4_OLILU    (P82888), H4_ONCMY    (P62797), 
H4_ORENI    (P62796), H4_PARLI    (P62780), H4_PEA      (P62788), 
H4_PHACH    (P62792), H4_PHYPO    (P04915), H4_PIG      (P62802), 
H4_PISBR    (P62777), H4_PISOC    (P62778), H4_PLADU    (P62795), 
H4_PONAB    (Q5RCS7), H4_PSAMI    (P62781), H4_PYCHE    (P62779), 
H4_PYRSA    (Q43083), H4_RAT      (P62804), H4_RHYAM    (P84050), 
H4_SCHPO    (P09322), H4_SILLA    (Q76H85), H4_SOLCH    (Q6V9I2), 
H4_SOLLC    (P35057), H4_SOLST    (P27996), H4_SOYBN    (P0CG89), 
H4_STENO    (P62790), H4_STRPU    (P62783), H4_STYLE    (P62791), 
H4_STYPL    (Q27765), H4_TETTS    (P69152), H4_TIGCA    (P84045), 
H4_TRICD    (P91890), H4_URECA    (P62794), H4_USTMA    (Q6ZXX3), 
H4_VOLCA    (P08436), H4_XENBO    (P62798), H4_XENLA    (P62799), 
H4_XENTR    (Q28DR4), H4_YEAST    (P02309)
» more

False negative sequences
4 sequences

H43_MAIZE   (Q41811), H4G_HUMAN   (Q99525), H4_ENCCU    (Q8SQP4), 
H4_ENTHI    (P40287)
» more

'Partial' sequences
4 sequences

H41_BLEJA   (P80737), H4Y_BLEJA   (P80738), H4_PSEMZ    (P85945), 
H4_SEPOF    (Q7M3Z5)
» more

False positive sequences
18 sequences

CATA_EMENI  (P55305), EFGM_SCLS1  (A7EVV9), GLCD2_PICTO (Q6L047), 
RTN1_HUMAN  (Q16799), RTN1_MOUSE  (Q8K0T0), RTN1_PANTR  (Q5IS59), 
RTN1_RAT    (Q64548), SMC4_DICDI  (Q54LV0), TM38B_MOUSE (Q9DAV9), 
» more

[Detailed view]
12 PDB

1EQZ; 1KX5; 1M1A; 2KWO; 2LVM; 2RNY; 3TU4; 4DOW; 4JJN; 4KUD; 4LD9; 4PSX

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