Entry: PS00047

Forthcoming changes to the profile format
General information about the entry

Entry name [info] HISTONE_H4
Accession [info] PS00047
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); APR-1990 (DATA UPDATE); JUL-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00046

Name and characterization of the entry

Description [info] Histone H4 signature.
Pattern [info]
G-A-K-R-H.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_08 which contains 546'238 sequence entries.


Total number of hits 122 in 122 different sequences
Number of true positive hits 104 in 104 different sequences
Number of 'unknown' hits
Number of false positive hits 18 in 18 different sequences
Number of false negative sequences 4
Number of 'partial' sequences 4
Precision (true positives / (true positives + false positives)) 85.25 %
Recall (true positives / (true positives + false negatives)) 96.30 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
104 sequences

H41_ASHGO   (Q757K0), H41_EMENI   (P23750), H41_PENFN   (Q711M0), 
H41_TETPY   (P02310), H41_WHEAT   (P62785), H42_ASHGO   (Q75AX1), 
H42_EMENI   (P23751), H42_PENFN   (Q8NIQ8), H42_TETPY   (P69151), 
H42_WHEAT   (P62786), H48_CHICK   (P70081), H4_ACRAS    (P84048), 
H4_ACRFO    (P35059), H4_AGABI    (P62793), H4_APIME    (P91849), 
H4_APLCA    (Q8MTV8), H4_ARATH    (P59259), H4_ASCSU    (Q27443), 
H4_ASEAQ    (P84047), H4_ASPFU    (Q7LKT3), H4_ASPOR    (Q76MU7), 
H4_BLAAD    (Q8J1L3), H4_BOVIN    (P62803), H4_CAEEL    (P62784), 
H4_CAIMO    (P62800), H4_CANGA    (Q8NIG3), H4_CAPAN    (Q71V09), 
H4_CHAVR    (Q7KQD1), H4_CHEMJ    (Q6PMI5), H4_CHICK    (P62801), 
H4_CHITH    (P84046), H4_CHLRE    (P50566), H4_DENKL    (Q6LAF1), 
H4_DIAPU    (P91882), H4_DICDI    (Q76NW2), H4_DROER    (P84041), 
H4_DROHY    (P84042), H4_DROMA    (Q76FE7), H4_DROME    (P84040), 
H4_DROOR    (Q76FF1), H4_DROSE    (Q76FD9), H4_DROSI    (P84043), 
H4_DROTE    (Q76FF5), H4_DROYA    (P84044), H4_EIMTE    (Q8T7J8), 
H4_EUCGL    (Q6WZ83), H4_EUPCR    (P80739), H4_FLATR    (Q6LAF3), 
H4_HOLTU    (P62776), H4_HUMAN    (P62805), H4_LITVA    (P83865), 
H4_LOLTE    (P62887), H4_LYTPI    (P62782), H4_MACFA    (Q4R362), 
H4_MAIZE    (P62787), H4_MASBA    (Q9U7D0), H4_MEDSA    (P62789), 
H4_MORAP    (Q9HDF5), H4_MOUSE    (P62806), H4_MYRRU    (P84049), 
H4_MYTCA    (Q6WV73), H4_MYTCH    (Q6WV74), H4_MYTED    (Q7K8C0), 
H4_MYTGA    (Q6WV90), H4_MYTTR    (Q6WV72), H4_NEUCR    (P04914), 
H4_OIKDI    (Q8I0Y4), H4_OLILU    (P82888), H4_ONCMY    (P62797), 
H4_ORENI    (P62796), H4_PARLI    (P62780), H4_PEA      (P62788), 
H4_PHACH    (P62792), H4_PHYPO    (P04915), H4_PIG      (P62802), 
H4_PISBR    (P62777), H4_PISOC    (P62778), H4_PLADU    (P62795), 
H4_PONAB    (Q5RCS7), H4_PSAMI    (P62781), H4_PYCHE    (P62779), 
H4_PYRSA    (Q43083), H4_RAT      (P62804), H4_RHYAM    (P84050), 
H4_SCHPO    (P09322), H4_SILLA    (Q76H85), H4_SOLCH    (Q6V9I2), 
H4_SOLLC    (P35057), H4_SOLST    (P27996), H4_SOYBN    (P0CG89), 
H4_STENO    (P62790), H4_STRPU    (P62783), H4_STYLE    (P62791), 
H4_STYPL    (Q27765), H4_TETTS    (P69152), H4_TIGCA    (P84045), 
H4_TRICD    (P91890), H4_URECA    (P62794), H4_USTMA    (Q6ZXX3), 
H4_VOLCA    (P08436), H4_XENBO    (P62798), H4_XENLA    (P62799), 
H4_XENTR    (Q28DR4), H4_YEAST    (P02309)
» More

UniProtKB/Swiss-Prot
False negative sequences
4 sequences

H43_MAIZE   (Q41811), H4G_HUMAN   (Q99525), H4_ENCCU    (Q8SQP4), 
H4_ENTHI    (P40287)
» More

UniProtKB/Swiss-Prot
'Partial' sequences
4 sequences

H41_BLEJA   (P80737), H4Y_BLEJA   (P80738), H4_PSEMZ    (P85945), 
H4_SEPOF    (Q7M3Z5)
» More

UniProtKB/Swiss-Prot
False positive sequences
18 sequences

CATA_EMENI  (P55305), EFGM_SCLS1  (A7EVV9), GLCD2_PICTO (Q6L047), 
MNMC_CHRVO  (Q7NWN9), OBSCN_MOUSE (A2AAJ9), PURP_CALMQ  (A8M9J5), 
QUEC_RALME  (Q1LJY1), RL2_ALKEH   (Q0ABH2), RL2_HALHL   (A1WVB9), 
RTN1_HUMAN  (Q16799), RTN1_MOUSE  (Q8K0T0), RTN1_PANTR  (Q5IS59), 
RTN1_RAT    (Q64548), SMC4_DICDI  (Q54LV0), TM38B_MOUSE (Q9DAV9), 
TMCB_DICDI  (Q5FBC3), TMCC_DICDI  (Q5FBC4), UPPP_LAWIP  (Q1MQW6)
» More

PDB
[Detailed view]
11 PDB

1EQZ; 1KX5; 1M1A; 2KWO; 2LVM; 2RNY; 3TU4; 4DOW; 4JJN; 4KUD; 4LD9

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission