Entry: PS00047

General information about the entry

Entry name [info] HISTONE_H4
Accession [info] PS00047
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); APR-1990 (DATA UPDATE); MAR-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC00046

Name and characterization of the entry

Description [info] Histone H4 signature.
Pattern [info]

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_05 which contains 548'454 sequence entries.

Total number of hits 122 in 122 different sequences
Number of true positive hits 104 in 104 different sequences
Number of 'unknown' hits
Number of false positive hits 18 in 18 different sequences
Number of false negative sequences 4
Number of 'partial' sequences 4
Precision (true positives / (true positives + false positives)) 85.25 %
Recall (true positives / (true positives + false negatives)) 96.30 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

True positive sequences
104 sequences

H41_ASHGO   (Q757K0), H41_EMENI   (P23750), H41_PENFN   (Q711M0), 
H41_TETPY   (P02310), H41_WHEAT   (P62785), H42_ASHGO   (Q75AX1), 
H42_EMENI   (P23751), H42_PENFN   (Q8NIQ8), H42_TETPY   (P69151), 
H42_WHEAT   (P62786), H48_CHICK   (P70081), H4_ACRAS    (P84048), 
H4_ACRFO    (P35059), H4_AGABI    (P62793), H4_APIME    (P91849), 
H4_APLCA    (Q8MTV8), H4_ARATH    (P59259), H4_ASCSU    (Q27443), 
H4_ASEAQ    (P84047), H4_ASPFU    (Q7LKT3), H4_ASPOR    (Q76MU7), 
H4_BLAAD    (Q8J1L3), H4_BOVIN    (P62803), H4_CAEEL    (P62784), 
H4_CAIMO    (P62800), H4_CANGA    (Q8NIG3), H4_CAPAN    (Q71V09), 
H4_CHAVR    (Q7KQD1), H4_CHEMJ    (Q6PMI5), H4_CHICK    (P62801), 
H4_CHITH    (P84046), H4_CHLRE    (P50566), H4_DENKL    (Q6LAF1), 
H4_DIAPU    (P91882), H4_DICDI    (Q76NW2), H4_DROER    (P84041), 
H4_DROHY    (P84042), H4_DROMA    (Q76FE7), H4_DROME    (P84040), 
H4_DROOR    (Q76FF1), H4_DROSE    (Q76FD9), H4_DROSI    (P84043), 
H4_DROTE    (Q76FF5), H4_DROYA    (P84044), H4_EIMTE    (Q8T7J8), 
H4_EUCGL    (Q6WZ83), H4_EUPCR    (P80739), H4_FLATR    (Q6LAF3), 
H4_HOLTU    (P62776), H4_HUMAN    (P62805), H4_LITVA    (P83865), 
H4_LOLTE    (P62887), H4_LYTPI    (P62782), H4_MACFA    (Q4R362), 
H4_MAIZE    (P62787), H4_MASBA    (Q9U7D0), H4_MEDSA    (P62789), 
H4_MORAP    (Q9HDF5), H4_MOUSE    (P62806), H4_MYRRU    (P84049), 
H4_MYTCA    (Q6WV73), H4_MYTCH    (Q6WV74), H4_MYTED    (Q7K8C0), 
H4_MYTGA    (Q6WV90), H4_MYTTR    (Q6WV72), H4_NEUCR    (P04914), 
H4_OIKDI    (Q8I0Y4), H4_OLILU    (P82888), H4_ONCMY    (P62797), 
H4_ORENI    (P62796), H4_PARLI    (P62780), H4_PEA      (P62788), 
H4_PHACH    (P62792), H4_PHYPO    (P04915), H4_PIG      (P62802), 
H4_PISBR    (P62777), H4_PISOC    (P62778), H4_PLADU    (P62795), 
H4_PONAB    (Q5RCS7), H4_PSAMI    (P62781), H4_PYCHE    (P62779), 
H4_PYRSA    (Q43083), H4_RAT      (P62804), H4_RHYAM    (P84050), 
H4_SCHPO    (P09322), H4_SILLA    (Q76H85), H4_SOLCH    (Q6V9I2), 
H4_SOLLC    (P35057), H4_SOLST    (P27996), H4_SOYBN    (P0CG89), 
H4_STENO    (P62790), H4_STRPU    (P62783), H4_STYLE    (P62791), 
H4_STYPL    (Q27765), H4_TETTS    (P69152), H4_TIGCA    (P84045), 
H4_TRICD    (P91890), H4_URECA    (P62794), H4_USTMA    (Q6ZXX3), 
H4_VOLCA    (P08436), H4_XENBO    (P62798), H4_XENLA    (P62799), 
H4_XENTR    (Q28DR4), H4_YEAST    (P02309)
» More

False negative sequences
4 sequences

H43_MAIZE   (Q41811), H4G_HUMAN   (Q99525), H4_ENCCU    (Q8SQP4), 
H4_ENTHI    (P40287)
» More

'Partial' sequences
4 sequences

H41_BLEJA   (P80737), H4Y_BLEJA   (P80738), H4_PSEMZ    (P85945), 
H4_SEPOF    (Q7M3Z5)
» More

False positive sequences
18 sequences

CATA_EMENI  (P55305), EFGM_SCLS1  (A7EVV9), GLCD2_PICTO (Q6L047), 
RTN1_HUMAN  (Q16799), RTN1_MOUSE  (Q8K0T0), RTN1_PANTR  (Q5IS59), 
RTN1_RAT    (Q64548), SMC4_DICDI  (Q54LV0), TM38B_MOUSE (Q9DAV9), 
» More

[Detailed view]
12 PDB

1EQZ; 1KX5; 1M1A; 2KWO; 2LVM; 2RNY; 3TU4; 4DOW; 4JJN; 4KUD; 4LD9; 4PSX

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