Entry: PS00047

General information about the entry

Entry name [info] HISTONE_H4
Accession [info] PS00047
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); APR-1990 (DATA UPDATE); OCT-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00046

Name and characterization of the entry

Description [info] Histone H4 signature.
Pattern [info]
G-A-K-R-H.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_11 which contains 553'231 sequence entries.


Total number of hits 122 in 122 different sequences
Number of true positive hits 104 in 104 different sequences
Number of 'unknown' hits 0
Number of false positive hits 18 in 18 different sequences
Number of false negative sequences 4
Number of 'partial' sequences 4
Precision (true positives / (true positives + false positives)) 85.25 %
Recall (true positives / (true positives + false negatives)) 96.30 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
104 sequences

H41_ASHGO   (Q757K0    ), H41_EMENI   (P23750    ), H41_TALFU   (Q711M0    ), 
H41_TETPY   (P02310    ), H41_WHEAT   (P62785    ), H42_ASHGO   (Q75AX1    ), 
H42_EMENI   (P23751    ), H42_TALFU   (Q8NIQ8    ), H42_TETPY   (P69151    ), 
H42_WHEAT   (P62786    ), H48_CHICK   (P70081    ), H4_ACRAS    (P84048    ), 
H4_ACRFO    (P35059    ), H4_AGABI    (P62793    ), H4_APIME    (P91849    ), 
H4_APLCA    (Q8MTV8    ), H4_ARATH    (P59259    ), H4_ASCSU    (Q27443    ), 
H4_ASEAQ    (P84047    ), H4_ASPFU    (Q7LKT3    ), H4_ASPOR    (Q76MU7    ), 
H4_BLAAD    (Q8J1L3    ), H4_BOVIN    (P62803    ), H4_CAEEL    (P62784    ), 
H4_CAIMO    (P62800    ), H4_CANGA    (Q8NIG3    ), H4_CAPAN    (Q71V09    ), 
H4_CHAVR    (Q7KQD1    ), H4_CHEMJ    (Q6PMI5    ), H4_CHICK    (P62801    ), 
H4_CHITH    (P84046    ), H4_CHLRE    (P50566    ), H4_DENKL    (Q6LAF1    ), 
H4_DIAPU    (P91882    ), H4_DICDI    (Q76NW2    ), H4_DROER    (P84041    ), 
H4_DROHY    (P84042    ), H4_DROMA    (Q76FE7    ), H4_DROME    (P84040    ), 
H4_DROOR    (Q76FF1    ), H4_DROSE    (Q76FD9    ), H4_DROSI    (P84043    ), 
H4_DROTE    (Q76FF5    ), H4_DROYA    (P84044    ), H4_EIMTE    (Q8T7J8    ), 
H4_EUCGL    (Q6WZ83    ), H4_EUPCR    (P80739    ), H4_FLATR    (Q6LAF3    ), 
H4_HOLTU    (P62776    ), H4_HUMAN    (P62805    ), H4_LITVA    (P83865    ), 
H4_LOLTE    (P62887    ), H4_LYTPI    (P62782    ), H4_MACFA    (Q4R362    ), 
H4_MAIZE    (P62787    ), H4_MASBA    (Q9U7D0    ), H4_MEDSA    (P62789    ), 
H4_MORAP    (Q9HDF5    ), H4_MOUSE    (P62806    ), H4_MYRRU    (P84049    ), 
H4_MYTCA    (Q6WV73    ), H4_MYTCH    (Q6WV74    ), H4_MYTED    (Q7K8C0    ), 
H4_MYTGA    (Q6WV90    ), H4_MYTTR    (Q6WV72    ), H4_NEUCR    (P04914    ), 
H4_OIKDI    (Q8I0Y4    ), H4_OLILU    (P82888    ), H4_ONCMY    (P62797    ), 
H4_ORENI    (P62796    ), H4_PARLI    (P62780    ), H4_PEA      (P62788    ), 
H4_PHACH    (P62792    ), H4_PHYPO    (P04915    ), H4_PIG      (P62802    ), 
H4_PISBR    (P62777    ), H4_PISOC    (P62778    ), H4_PLADU    (P62795    ), 
H4_PONAB    (Q5RCS7    ), H4_PSAMI    (P62781    ), H4_PYCHE    (P62779    ), 
H4_PYRSA    (Q43083    ), H4_RAT      (P62804    ), H4_RHYAM    (P84050    ), 
H4_SCHPO    (P09322    ), H4_SILLA    (Q76H85    ), H4_SOLCH    (Q6V9I2    ), 
H4_SOLLC    (P35057    ), H4_SOLST    (P27996    ), H4_SOYBN    (P0CG89    ), 
H4_STENO    (P62790    ), H4_STRPU    (P62783    ), H4_STYLE    (P62791    ), 
H4_STYPL    (Q27765    ), H4_TETTS    (P69152    ), H4_TIGCA    (P84045    ), 
H4_TRICD    (P91890    ), H4_URECA    (P62794    ), H4_USTMA    (Q6ZXX3    ), 
H4_VOLCA    (P08436    ), H4_XENBO    (P62798    ), H4_XENLA    (P62799    ), 
H4_XENTR    (Q28DR4    ), H4_YEAST    (P02309    )
» more

UniProtKB/Swiss-Prot
False negative sequences
4 sequences

H43_MAIZE   (Q41811    ), H4G_HUMAN   (Q99525    ), H4_ENCCU    (Q8SQP4    ), 
H4_ENTHI    (P40287    )
» more

UniProtKB/Swiss-Prot
'Partial' sequences
4 sequences

H41_BLEJA   (P80737    ), H4Y_BLEJA   (P80738    ), H4_PSEMZ    (P85945    ), 
H4_SEPOF    (Q7M3Z5    )
» more

UniProtKB/Swiss-Prot
False positive sequences
18 sequences

CATA_EMENI  (P55305    ), EFGM_SCLS1  (A7EVV9    ), GLCD2_PICTO (Q6L047    ), 
MNMC_CHRVO  (Q7NWN9    ), OBSCN_MOUSE (A2AAJ9    ), PURP_CALMQ  (A8M9J5    ), 
QUEC_CUPMC  (Q1LJY1    ), RL2_ALKEH   (Q0ABH2    ), RL2_HALHL   (A1WVB9    ), 
RTN1_HUMAN  (Q16799    ), RTN1_MOUSE  (Q8K0T0    ), RTN1_PANTR  (Q5IS59    ), 
RTN1_RAT    (Q64548    ), SMC4_DICDI  (Q54LV0    ), TM38B_MOUSE (Q9DAV9    ), 
TMCB_DICDI  (Q5FBC3    ), TMCC_DICDI  (Q5FBC4    ), UPPP_LAWIP  (Q1MQW6    )
» more

PDB
[Detailed view]
13 PDB

1EQZ; 1KX5; 1M1A; 2KWO; 2LVM; 2RNY; 3TU4; 4DOW; 4JJN; 4KUD; 4LD9; 4PSX; 5JA4
» more

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