Entry: PS00077

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General information about the entry

Entry name [info] COX1_CUB
Accession [info] PS00077
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); NOV-1997 (DATA UPDATE); MAR-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00074

Name and characterization of the entry

Description [info] Heme-copper oxidase catalytic subunit, copper B binding region signature.
Pattern [info]
[YWG]-[LIVFYWTA](2)-[VGS]-H-[LNP]-x-V-x(44,47)-H-H.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_04 which contains 544'996 sequence entries.


Total number of hits 231 in 231 different sequences
Number of true positive hits 231 in 231 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 5
Number of 'partial' sequences 13
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 97.88 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Site [info] copper at position 4
Site [info] copper at position 9
Site [info] copper at position 10
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
231 sequences

AI3_DEBHA   (A9RAH6), AI7_USTMA   (Q0H8Y2), AI8_USTMA   (Q0H8Y3), 
AOX1_AERPE  (Q9YDX6), COX13_THET8 (P98005), COX14_BRADU (P98057), 
COX1A_NOCFA (Q5YRP8), COX1A_PARDE (P08305), COX1A_STRAW (Q82AK9), 
COX1A_STRCO (Q9X813), COX1B_NOCFA (Q5Z0K2), COX1B_PARDE (P98002), 
COX1B_STRAW (Q828X4), COX1B_STRCO (Q9K451), COX1_ACACA  (Q37370), 
COX1_AEDAE  (B0FWC7), COX1_AEGCO  (P68540), COX1_ALBCO  (P48887), 
COX1_ALLMA  (P80440), COX1_AMICA  (P29643), COX1_ANOGA  (P34838), 
COX1_ANOQU  (P33504), COX1_APILI  (P20374), COX1_APTAU  (O03515), 
COX1_ARATH  (P60620), COX1_ARTSF  (Q37705), COX1_ASCSU  (P24881), 
COX1_ASHGO  (P62514), COX1_ATRSP  (P29644), COX1_BACP3  (P16262), 
COX1_BACPE  (Q04440), COX1_BACSU  (P24010), COX1_BALBO  (Q599A1), 
COX1_BALMU  (P41293), COX1_BALPH  (P24983), COX1_BETVU  (P24794), 
COX1_BLAGE  (Q36724), COX1_BOSIN  (Q6EMS9), COX1_BOSMU  (Q5Y4Q8), 
COX1_BOVIN  (P00396), COX1_BRADU  (P31833), COX1_BUTBU  (Q94WR7), 
COX1_CAEEL  (P24893), COX1_CANAL  (P0C8K9), COX1_CANFA  (Q9ZZ64), 
COX1_CANGA  (Q85QA3), COX1_CANLU  (Q1HKA1), COX1_CANSI  (Q33375), 
COX1_CARAU  (O78681), COX1_CASBE  (O03521), COX1_CERSI  (O03198), 
COX1_CHICK  (P18943), COX1_CHLRE  (P08681), COX1_CHOBI  (P50668), 
COX1_CHOCR  (P48866), COX1_CHOFU  (P50669), COX1_CHOOC  (P67793), 
COX1_CHOPI  (P67794), COX1_CHRKN  (Q9B229), COX1_COLPO  (O99041), 
COX1_CORDI  (Q6NFM3), COX1_COREF  (Q8FMT1), COX1_CORGL  (Q79VD7), 
COX1_COTJA  (P24984), COX1_CRANE  (Q6EGJ1), COX1_CRAZI  (Q6EGJ0), 
COX1_CRION  (P98003), COX1_CYACA  (P48867), COX1_CYPCA  (P24985), 
COX1_DANRE  (Q9MIY8), COX1_DASNO  (O21327), COX1_DEBHA  (A9RAH5), 
COX1_DICDI  (O21042), COX1_DIDVI  (P41310), COX1_DINSE  (O79548), 
COX1_DROMA  (Q34345), COX1_DROME  (P00399), COX1_DRONO  (O03524), 
COX1_DROSE  (Q34391), COX1_DROSI  (Q34388), COX1_DROYA  (P00400), 
COX1_DUGDU  (Q8W9N4), COX1_ELEMA  (Q2I3H2), COX1_EMEND  (P00402), 
COX1_EPHEQ  (Q33439), COX1_EQUAS  (P92477), COX1_FELCA  (P48888), 
COX1_FORLA  (P34188), COX1_GADMO  (Q36775), COX1_GEOBE  (Q6EGH9), 
COX1_GEOSD  (P29645), COX1_GEOTE  (Q6EGH8), COX1_HALGR  (P38595), 
COX1_HALSA  (P33518), COX1_HIPAM  (Q9ZZY9), COX1_HORSE  (P48659), 
COX1_HUMAN  (P00395), COX1_HYLLA  (Q7GEN7), COX1_HYLSY  (Q34800), 
COX1_KLULA  (P20386), COX1_LATCH  (O03167), COX1_LEITA  (P14544), 
COX1_LEMCA  (Q8LX30), COX1_LEPOC  (P29647), COX1_LOCMI  (Q36421), 
COX1_LOXAF  (Q9TA27), COX1_LUMTE  (Q34941), COX1_MACRO  (P92661), 
COX1_MAIZE  (P08742), COX1_MAMPR  (Q38PS0), COX1_MARPO  (P26856), 
COX1_MEGAT  (P29648), COX1_METSE  (Q35101), COX1_MOUSE  (P00397), 
COX1_MYCBO  (P63853), COX1_MYCLE  (Q9CBQ5), COX1_MYCPA  (Q73VC3), 
COX1_MYCTO  (P9WP70), COX1_MYCTU  (P9WP71), COX1_MYTED  (P41774), 
COX1_MYXGL  (O21079), COX1_NEUCR  (P03945), COX1_NOTPE  (O03539), 
COX1_ONCMY  (P48170), COX1_ORNAN  (Q36452), COX1_ORTCH  (Q6EGI5), 
COX1_ORTGR  (Q6EGI2), COX1_ORTHI  (Q6EGI3), COX1_ORTUN  (Q6EGI4), 
COX1_ORYSJ  (P14578), COX1_OSTNU  (Q9B840), COX1_PANBU  (P29649), 
COX1_PANPA  (Q9T9X0), COX1_PANTR  (Q9T9W1), COX1_PAPBU  (Q6EGI0), 
COX1_PAPHA  (Q9ZXY2), COX1_PARLI  (P12700), COX1_PARTE  (P05489), 
COX1_PATPE  (Q33820), COX1_PECMA  (Q96000), COX1_PELSU  (O79672), 
COX1_PETMA  (Q35536), COX1_PHOVI  (Q00527), COX1_PHYME  (Q02211), 
COX1_PHYPO  (Q07434), COX1_PIG    (O79876), COX1_PISOC  (P25001), 
COX1_PLABE  (O99252), COX1_PLACH  (O99255), COX1_PLAFA  (Q02766), 
COX1_PODAN  (P20681), COX1_POLOR  (Q95911), COX1_POLSP  (P29650), 
COX1_POLSX  (P29651), COX1_POMNI  (P29652), COX1_PONAB  (P92692), 
COX1_PROWI  (Q05143), COX1_RABIT  (O79429), COX1_RAPSA  (P60621), 
COX1_RAT    (P05503), COX1_RHEAM  (O03546), COX1_RHILE  (Q08855), 
COX1_RHISA  (O99818), COX1_RHIUN  (Q96062), COX1_RHOCA  (P98059), 
COX1_RHOSH  (P33517), COX1_RICBR  (Q1RI42), COX1_RICCN  (Q92I67), 
COX1_RICFE  (Q4ULU5), COX1_RICPR  (O54069), COX1_SACDO  (P98001), 
COX1_SALSA  (Q9ZZM6), COX1_SALTR  (P29653), COX1_SCAPL  (P29654), 
COX1_SCHPO  (P07657), COX1_SCYCA  (O79403), COX1_SHEEP  (O78749), 
COX1_SORBI  (P05502), COX1_SQUAC  (Q9ZZ52), COX1_STRCA  (O21399), 
COX1_STRPU  (P15544), COX1_SYNY3  (Q06473), COX1_TETNG  (Q4JQI5), 
COX1_TETPY  (P11947), COX1_THEAN  (Q4UJ69), COX1_THET8  (Q5SJ79), 
COX1_THEVL  (P50676), COX1_TINMA  (O03554), COX1_TRIRU  (Q01555), 
COX1_TRYBB  (P04371), COX1_USTMA  (Q0H8Y4), COX1_VANPO  (A6H4Q6), 
COX1_WHEAT  (P68539), COX1_WICCA  (P48868), COX1_XENLA  (P00398), 
COX1_YEAST  (P00401), COX1_ZYGTR  (Q6EGH7), COXN_BRADU  (P98000), 
CYOB_BUCAI  (P57543), CYOB_BUCAP  (Q8K994), CYOB_BUCBP  (Q89AA4), 
CYOB_ECO57  (P0ABJ0), CYOB_ECOL6  (P0ABI9), CYOB_ECOLI  (P0ABI8), 
CYOB_PSEAE  (Q9I426), CYOB_PSEPU  (Q9WWR2), FIXN_AGRT7  (P98055), 
FIXN_AZOC5  (P98056), FIXN_BRADU  (Q03073), FIXN_RHIME  (Q05572), 
NORB_PSEAE  (Q59647), NORB_PSEST  (P98008), QOX1_ACEAC  (P98009), 
QOX1_BACPZ  (E0TW66), QOX1_BACSU  (P34956), QOX1_STAA3  (Q2FI18), 
QOX1_STAA8  (Q2FZK0), QOX1_STAAB  (Q2YX15), QOX1_STAAC  (Q5HH24), 
QOX1_STAAM  (Q99V37), QOX1_STAAN  (Q7A699), QOX1_STAAR  (Q6GI24), 
QOX1_STAAS  (Q6GAF3), QOX1_STAAW  (Q7A182), QOX1_STAEQ  (Q5HQB0), 
QOX1_STAES  (Q8CPP7), QOX1_STAHJ  (Q4L564), QOX1_STAS1  (Q49WI3), 
QOX1_SULAC  (P98004), QOXM_SULAC  (P39481), SCE4_YEAST  (Q9ZZX1)
» More

UniProtKB/Swiss-Prot
False negative sequences
5 sequences

COX1_OENBE  (P08743), COX1_PEA    (P12786), COX1_SOYBN  (P07506), 
COX1_THEPA  (Q36097), COX1_YARLI  (Q9B6E7)
» More

UniProtKB/Swiss-Prot
'Partial' sequences
13 sequences

COX1_ALBTU  (Q09333), COX1_ANAPL  (P50656), COX1_CAPHI  (Q36347), 
COX1_CHORO  (P50671), COX1_DORPE  (Q8WEW4), COX1_GOMVA  (P29646), 
COX1_HAPMA  (Q9ZZ08), COX1_LOLFO  (Q9TGE6), COX1_OCTVU  (Q9G6J1), 
COX1_PLADA  (Q9TGD8), COX1_SEPOF  (Q8WEW3), COX1_SEPPH  (Q957T2), 
COX1_THETH  (Q56408)
» More

PDB
[Detailed view]
67 PDB

1AR1; 1EHK; 1FFT; 1M56; 1M57; 1OCC; 1OCO; 1OCR; 1OCZ; 1QLE; 1V54; 1V55; 1XME; 2DYR; 2DYS; 2EIJ; 2EIK; 2EIL; 2EIM; 2EIN; 2GSM; 2OCC; 2QPD; 2QPE; 2Y69; 2YBB; 2YEV; 2ZXW; 3ABK; 3ABL; 3ABM; 3AG1; 3AG2; 3AG3; 3AG4; 3ASN; 3ASO; 3BVD; 3DTU; 3EH3; 3EH4; 3EH5; 3EHB; 3FYE; 3FYI; 3HB3; 3O0R; 3QJQ; 3QJR; 3QJS; 3QJT; 3QJU; 3QJV; 3S33; 3S38; 3S39; 3S3A; 3S3B; 3S3C; 3S3D; 3S8F; 3S8G; 4FA7; 4FAA; 4GP4; 4GP5; 4GP8
» More

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