Entry: PS00087

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General information about the entry

Entry name [info] SOD_CU_ZN_1
Accession [info] PS00087
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); APR-2006 (DATA UPDATE); JUN-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00082

Name and characterization of the entry

Description [info] Copper/Zinc superoxide dismutase signature 1.
Pattern [info]
[GA]-[IMFAT]-H-[LIVF]-H-{S}-x-[GP]-[SDG]-x-[STAGDE].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_07 which contains 546'000 sequence entries.


Total number of hits 176 in 176 different sequences
Number of true positive hits 148 in 148 different sequences
Number of 'unknown' hits
Number of false positive hits 28 in 28 different sequences
Number of false negative sequences 27
Number of 'partial' sequences 11
Precision (true positives / (true positives + false positives)) 84.09 %
Recall (true positives / (true positives + false negatives)) 84.57 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info] 1
Site [info] copper at position 3
Site [info] copper at position 5
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
148 sequences

ALL5B_OLEEU (Q8L5E0), SOD1A_XENLA (P13926), SOD1B_XENLA (P15107), 
SODC1_ARATH (P24704), SODC1_BRAJU (Q42611), SODC1_DEBHA (O42724), 
SODC1_DICDI (Q55GQ5), SODC1_MESCR (P93258), SODC1_ORYSI (A2XGP6), 
SODC1_ORYSJ (Q0DRV6), SODC1_SOLLC (P14830), SODC2_ARATH (O78310), 
SODC2_BRAJU (Q42612), SODC2_DICDI (Q54RN1), SODC2_MAIZE (P11428), 
SODC2_MESCR (O49044), SODC2_ORYSJ (P28757), SODC2_SOLLC (Q43779), 
SODC3_DICDI (Q54RQ1), SODC4_DICDI (Q54TU5), SODC4_MAIZE (P23345), 
SODC5_DICDI (Q54G70), SODC5_MAIZE (P23346), SODC6_DICDI (Q54TW8), 
SODCP_MEDSA (O65198), SODCP_ORYSJ (P93407), SODCP_PEA   (P11964), 
SODCP_PETHY (P10792), SODCP_PINSY (P24707), SODCP_SOLCS (O04997), 
SODCP_SOLLC (P14831), SODCP_SPIOL (P07505), SODCP_VITVI (O65199), 
SODCP_ZANAE (O65175), SODC_ACTPL  (P24702), SODC_ANACO  (Q9SQL5), 
SODC_ASHGO  (Q751L8), SODC_ASPFL  (Q8X1S6), SODC_ASPFU  (Q9Y8D9), 
SODC_ASPJA  (Q12548), SODC_ASPNC  (A2QMY6), SODC_ASPNG  (P85978), 
SODC_ASPOR  (Q877B5), SODC_BOMMO  (P82205), SODC_BOSMU  (Q52RN5), 
SODC_BOTFU  (Q70Q35), SODC_BOVIN  (P00442), SODC_BRAOC  (P09678), 
SODC_BRUAB  (P15453), SODC_BRUME  (P66826), SODC_BRUPA  (P41962), 
SODC_BRUSU  (P66827), SODC_CAEBR  (A8XCP3), SODC_CAEEL  (P34697), 
SODC_CALJA  (Q8HXP8), SODC_CANAX  (O59924), SODC_CANGA  (Q6FWL5), 
SODC_CAPAN  (O22373), SODC_CAPHI  (Q5FB29), SODC_CARCR  (P80174), 
SODC_CARPA  (O65768), SODC_CAUCR  (P20379), SODC_CAVPO  (P33431), 
SODC_CEBAP  (Q8HXP9), SODC_CERCA  (P28755), SODC_CEREL  (O46412), 
SODC_CHICK  (P80566), SODC_CHYAM  (Q07182), SODC_CLAP2  (Q96VL0), 
SODC_COLGL  (O94178), SODC_CORMI  (Q8J0N2), SODC_CRYGA  (Q9C0N4), 
SODC_DANRE  (O73872), SODC_DROBS  (P54407), SODC_DROER  (Q9U4X4), 
SODC_DROMA  (P61853), SODC_DROMD  (Q95081), SODC_DROME  (P61851), 
SODC_DROMI  (Q95079), SODC_DROOB  (Q95085), SODC_DROOR  (Q9U4X5), 
SODC_DROPB  (Q95087), SODC_DROPE  (Q95088), SODC_DROPS  (Q95086), 
SODC_DROSE  (P61854), SODC_DROSI  (P61852), SODC_DROTE  (Q9U4X2), 
SODC_DROVI  (P10791), SODC_DROWI  (P41973), SODC_DROYA  (Q9U4X3), 
SODC_EMENI  (Q9HEY7), SODC_FRATH  (Q59448), SODC_HAECO  (Q27666), 
SODC_HAEDU  (Q59452), SODC_HAEPA  (P25842), SODC_HALRO  (P81926), 
SODC_HORSE  (P00443), SODC_HUMAN  (P00441), SODC_HUMLT  (P83684), 
SODC_HYLLA  (Q8HXQ3), SODC_IPOBA  (Q07796), SODC_ISATE  (Q8J0N3), 
SODC_KLULA  (Q6CPE2), SODC_LAMCR  (P81036), SODC_MACFA  (Q8HXQ1), 
SODC_MACFU  (Q8HXQ2), SODC_MACMU  (Q8HXQ0), SODC_MOUSE  (P08228), 
SODC_NEIMA  (P57005), SODC_NEIMB  (Q59623), SODC_NEUCR  (P07509), 
SODC_NICPL  (P27082), SODC_NPVAC  (P24705), SODC_NPVOP  (O12933), 
SODC_ONCVO  (P24706), SODC_PANGI  (O22668), SODC_PANTR  (P60052), 
SODC_PASMU  (Q59689), SODC_PAUKA  (O49073), SODC_PBCV1  (Q90023), 
SODC_PEA    (Q02610), SODC_PHOLE  (P00446), SODC_PIG    (P04178), 
SODC_PINSY  (P24669), SODC_PODAS  (Q711T9), SODC_PONPY  (Q8HXQ4), 
SODC_PRIGL  (P11418), SODC_RAT    (P07632), SODC_SCHMA  (Q01137), 
SODC_SCHPO  (P28758), SODC_SHEEP  (P09670), SODC_SOLCS  (O04996), 
SODC_SOYBN  (Q7M1R5), SODC_SPIOL  (P22233), SODC_XENTR  (Q0IIW3), 
SODC_XIPGL  (P03946), SODC_YARLI  (Q6C662), SODC_YEAST  (P00445), 
SODC_ZANAE  (O65174), SODE_BRUPA  (P41963), SODE_CAEEL  (P34461), 
SODE_HAECO  (P51547), SODE_HUMAN  (P08294), SODE_MOUSE  (O09164), 
SODE_ONCVO  (Q07449), SODE_RABIT  (P41975), SODE_RAT    (Q08420), 
SODE_SCHMA  (P16026)
» More

UniProtKB/Swiss-Prot
False negative sequences
27 sequences

CCS1_DEBHA  (Q6BK66), CCS_DICDI   (Q54F73), CCS_HUMAN   (O14618), 
CCS_MOUSE   (Q9WU84), CCS_PIG     (Q6PWT7), CCS_RAT     (Q9JK72), 
SODC1_AQUAE (O67149), SODC1_SALT4 (E8XDJ8), SODC1_SALTY (P0CW86), 
SODC2_AQUAE (O66602), SODCP_POPTM (P36214), SODC_DEIRA  (Q9RU48), 
SODC_DROTO  (Q95095), SODC_ECO57  (P0AGD2), SODC_ECOLI  (P0AGD1), 
SODC_HAEIF  (P25841), SODC_LEGPH  (Q5ZT17), SODC_LEGPN  (P69049), 
SODC_MYCBO  (P0A609), SODC_MYCLE  (Q9CBI6), SODC_MYCPA  (Q9AGW2), 
SODC_MYCTO  (P9WGE8), SODC_MYCTU  (P9WGE9), SODC_RABIT  (P09212), 
SODC_SALTY  (O68901), SODE_DIRIM  (P41974), YOJM_BACSU  (O31851)
» More

UniProtKB/Swiss-Prot
'Partial' sequences
11 sequences

ALL5A_OLEEU (P80740), SODC2_DEBHN (P82902), SODC2_PICAB (P29428), 
SODCP_PICAB (P29427), SODCP_PINPS (P81082), SODC_AGGAC  (Q59081), 
SODC_HORVU  (P34936), SODC_LITCT  (P23417), SODC_PAROL  (P83129), 
SODC_PASHA  (Q51853), SODC_STRHE  (P81163)
» More

UniProtKB/Swiss-Prot
False positive sequences
28 sequences

BURS_PERAM  (P84118), CYSA_STRCO  (Q59829), FABH_BORBR  (Q7WD20), 
FABH_BORPA  (Q7W5I4), FABH_BORPE  (Q7VW29), GYRB_PSEPU  (P13364), 
HUTI_DEIRA  (Q9RZ05), RPOC_CHLL2  (B3EER3), SYA_BURA4   (B1YNJ6), 
SYA_BURCA   (Q1BX19), SYA_BURCC   (B1K026), SYA_BURCH   (A0K6N4), 
SYA_BURCM   (Q0BG79), SYA_BURM7   (A3MJ36), SYA_BURM9   (A2S3D4), 
SYA_BURMA   (Q62KZ3), SYA_BURMS   (A1V3F2), SYA_BURP0   (A3NUB0), 
SYA_BURP1   (Q3JT87), SYA_BURP6   (A3N8K7), SYA_BURPP   (B2SZN0), 
SYA_BURPS   (Q63TF9), SYA_BURTA   (Q2SV73), SYA_BURXL   (Q13W97), 
SYA_CUPNH   (Q0K823), SYA_CUPPJ   (Q474F4), SYA_GEOSL   (P61701), 
SYA_METTH   (O27718)
» More

PDB
[Detailed view]
127 PDB

1AZV; 1B4L; 1BZO; 1CB4; 1CBJ; 1COB; 1E9O; 1E9P; 1E9Q; 1F18; 1F1G; 1FUN; 1HL4; 1HL5; 1IB5; 1IBB; 1IBD; 1IBF; 1IBH; 1JCV; 1L3N; 1N18; 1N19; 1OAJ; 1OAL; 1OZU; 1P1V; 1PTZ; 1PU0; 1Q0E; 1SDA; 1SDY; 1SOS; 1SPD; 1SRD; 1SXA; 1SXB; 1SXC; 1SXN; 1SXS; 1SXZ; 1TO4; 1TO5; 1UXL; 1UXM; 1XSO; 1YAI; 1YAZ; 1YSO; 1Z9N; 1Z9P; 2AEO; 2AF2; 2APS; 2AQN; 2AQP; 2AQQ; 2AQR; 2AQS; 2AQT; 2C9S; 2C9U; 2C9V; 2GBT; 2GBU; 2GBV; 2JCW; 2JLP; 2LU5; 2R27; 2SOD; 2V0A; 2VR6; 2VR7; 2VR8; 2WKO; 2WYT; 2WYZ; 2WZ0; 2WZ5; 2WZ6; 2Z7U; 2Z7W; 2Z7Y; 2Z7Z; 2ZKW; 2ZKX; 2ZKY; 2ZOW; 3CQP; 3CQQ; 3ECU; 3ECV; 3GTT; 3GTV; 3GZO; 3GZP; 3GZQ; 3H2P; 3H2Q; 3HOG; 3HW7; 3KBE; 3KBF; 3KH3; 3KH4; 3KM1; 3KM2; 3L9E; 3L9Y; 3LTV; 3MKG; 3PU7; 3QQD; 3RE0; 3S0P; 3SOD; 3T5W; 4A7G; 4A7Q; 4A7S; 4A7T; 4A7U; 4A7V; 4B3E; 4FF9; 4L05
» More

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