Entry: PS00115

General information about the entry
Entry name RNA_POL_II_REPEAT
Accession number PS00115
Entry type PATTERN
Date APR-1990 (CREATED); APR-1990 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00106
Name and characterization of the entry
DescriptionEukaryotic RNA polymerase II heptapeptide repeat.
Pattern Y-[ST]-P-[ST]-S-P-[STANK].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 350 hits in 16 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 348 hits in 14 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 2 hits in 2 different sequences
  • Number of known missed hits: 0
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 99.43 %
  • Recall (true hits / (true hits + false negatives)): 100.00 %
Comments
  • Taxonomic range: Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 43
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
RPB1_ARATH  (P18616), RPB1_ASHGO  (Q75A34), RPB1_CAEBR  (P35074), 
RPB1_CAEEL  (P16356), RPB1_CRIGR  (P11414), RPB1_DICDI  (P35084), 
RPB1_DROME  (P04052), RPB1_ENCCU  (Q8SSC4), RPB1_HUMAN  (P24928), 
RPB1_MOUSE  (P08775), RPB1_PICGU  (A5DCV3), RPB1_PLAFD  (P14248), 
RPB1_SCHPO  (P36594), RPB1_YEAST  (P04050)
False positive hits (sequences which do not belong to the set under consideration):
DNLJ_THEAB  (B7IDX6), RFX3_XENTR  (Q0V9K5)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

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Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 4GWQ;

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