Entry: PS00116

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General information about the entry

Entry name [info] DNA_POLYMERASE_B
Accession [info] PS00116
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); DEC-2004 (DATA UPDATE); SEP-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00107

Name and characterization of the entry

Description [info] DNA polymerase family B signature.
Pattern [info]
[YA]-[GLIVMSTAC]-D-T-D-[SG]-[LIVMFTC]-{LA}-[LIVMSTAC].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_10 which contains 546'790 sequence entries.


Total number of hits 156 in 156 different sequences
Number of true positive hits 143 in 143 different sequences
Number of 'unknown' hits
Number of false positive hits 13 in 13 different sequences
Number of false negative sequences 26
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 91.67 %
Recall (true positives / (true positives + false negatives)) 84.62 %

Comments [info]

Taxonomic range [info] Archaea, Bacteriophages, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
143 sequences

DPO1_KLULA  (P09804), DPO2_ECOLI  (P21189), DPO2_KLULA  (P05468), 
DPO5_SCHPO  (O60094), DPO5_YEAST  (P39985), DPOA_SCHPO  (P28040), 
DPOA_YEAST  (P13382), DPOD1_ARATH (Q9LVN7), DPOD1_BOVIN (P28339), 
DPOD1_CAEEL (P90829), DPOD1_DICDI (Q54N97), DPOD1_DROME (P54358), 
DPOD1_HUMAN (P28340), DPOD1_MESAU (P97283), DPOD1_MOUSE (P52431), 
DPOD1_ORYSJ (Q9LRE6), DPOD1_PLAFK (P30315), DPOD1_RAT   (O54747), 
DPOD1_SOYBN (O48901), DPOD_CANAX  (P46588), DPOD_SCHPO  (P30316), 
DPOD_YEAST  (P15436), DPOL1_AERPE (O93745), DPOL1_METTH (O27276), 
DPOL1_SULAC (P95690), DPOL1_SULOH (O50607), DPOL1_SULSO (P26811), 
DPOL2_AERPE (O93746), DPOLA_ARATH (Q9FHA3), DPOLA_DICDI (Q54SV8), 
DPOLA_DROME (P26019), DPOLA_HUMAN (P09884), DPOLA_LEIDO (O00874), 
DPOLA_MOUSE (P33609), DPOLA_ORYSJ (O48653), DPOLA_OXYTR (Q27152), 
DPOLA_RAT   (O89042), DPOLA_STENO (Q94636), DPOLA_TRYBB (P27727), 
DPOLA_XENLA (Q9DE46), DPOLZ_HUMAN (O60673), DPOLZ_MOUSE (Q61493), 
DPOL_ADE02  (P03261), DPOL_ADE04  (P87503), DPOL_ADE05  (P04495), 
DPOL_ADE07  (P05664), DPOL_ADE12  (P06538), DPOL_ADE40  (P48311), 
DPOL_ADEB2  (O72539), DPOL_ADEB3  (O72540), DPOL_ADECC  (Q65946), 
DPOL_ADECT  (P87553), DPOL_ADEG1  (Q64751), DPOL_ADES1  (Q8QNT0), 
DPOL_ADET1  (Q88469), DPOL_ALHV1  (O36363), DPOL_ARCFU  (O29753), 
DPOL_ASFB7  (P42489), DPOL_ASFK5  (P0C974), DPOL_ASFL6  (P43139), 
DPOL_ASFM2  (P0C972), DPOL_ASFP4  (P0C971), DPOL_ASFWA  (P0C973), 
DPOL_BPB03  (Q37882), DPOL_BPCP1  (Q37989), DPOL_BPM2   (P19894), 
DPOL_BPPH2  (P03680), DPOL_BPPRD  (P10479), DPOL_BPPZA  (P06950), 
DPOL_BPR69  (Q38087), DPOL_BPT4   (P04415), DPOL_CBEPV  (P30319), 
DPOL_DESST  (Q7SIG7), DPOL_EBVA8  (Q1HVC1), DPOL_EBVB9  (P03198), 
DPOL_EBVG   (Q3KSP1), DPOL_EHV1B  (P28858), DPOL_EHV1V  (Q6S6P1), 
DPOL_EHV2   (P52367), DPOL_ELHVK  (Q9DKT8), DPOL_FOWPN  (P21402), 
DPOL_GAHVM  (Q9E6N9), DPOL_GPCMV  (Q69025), DPOL_HCMVA  (P08546), 
DPOL_HCMVM  (Q6SW77), DPOL_HHV11  (P04293), DPOL_HHV1A  (P07917), 
DPOL_HHV1K  (P04292), DPOL_HHV1S  (P09854), DPOL_HHV21  (P07918), 
DPOL_HHV2H  (P89453), DPOL_HHV6U  (P28857), DPOL_HHV6Z  (Q9QJ32), 
DPOL_HHV7J  (P52342), DPOL_HHV8P  (Q2HRD0), DPOL_HVAVE  (A4KX57), 
DPOL_ICHVA  (P28859), DPOL_METJA  (Q58295), DPOL_METVO  (P52025), 
DPOL_MUHVS  (P27172), DPOL_NPVAC  (P18131), DPOL_NPVBM  (P41712), 
DPOL_NPVCF  (Q90162), DPOL_NPVLD  (P30318), DPOL_NPVOP  (Q83948), 
DPOL_ORFN2  (Q84173), DPOL_PBCV1  (P30321), DPOL_PBCVN  (P30320), 
DPOL_POV01  (A7U6F2), DPOL_PSHV1  (Q6UDK1), DPOL_PYRAB  (P0CL77), 
DPOL_PYRAY  (P0CL76), DPOL_PYRFU  (P61875), DPOL_PYRGL  (Q9HH06), 
DPOL_PYRHO  (O59610), DPOL_PYRSD  (Q51334), DPOL_PYRWO  (P61876), 
DPOL_RCMVM  (Q85428), DPOL_RHCM6  (O71121), DPOL_RSIV   (O70736), 
DPOL_SFAVA  (Q779J8), DPOL_SHV21  (P24907), DPOL_THEGO  (P56689), 
DPOL_THEKO  (P77933), DPOL_THES9  (Q56366), DPOL_TNAVC  (Q4U3V0), 
DPOL_TUHV1  (Q9YUS3), DPOL_TUHV2  (Q9YUS2), DPOL_VACCA  (O57191), 
DPOL_VACCC  (P20509), DPOL_VACCW  (P06856), DPOL_VAR67  (P33793), 
DPOL_VZVD   (P09252), DPOL_VZVO   (Q4JQU7), DPOM_ASCIM  (P22374), 
DPOM_CLAPU  (P22373), DPOM_MAIZE  (P10582), DPOM_NEUCS  (P33537), 
DPOM_NEUIN  (P33538), DPOM_PODAS  (Q01529), DPOZ_SCHPO  (Q9P6L6), 
DPOZ_YEAST  (P14284), REV3_ARATH  (Q766Z3)
» More

UniProtKB/Swiss-Prot
False negative sequences
26 sequences

DPOE_ASHGO  (Q752B8), DPOE_ASPFU  (Q4WXH8), DPOE_CANGA  (Q6FNY7), 
DPOE_CRYNB  (P0CN27), DPOE_CRYNJ  (P0CN26), DPOE_DEBHA  (Q6BNG2), 
DPOE_EMENI  (O93845), DPOE_KLULA  (Q6CUS7), DPOE_SCHPO  (P87154), 
DPOE_USTMA  (Q4PFV5), DPOE_YARLI  (Q6C4J0), DPOE_YEAST  (P21951), 
DPOL2_SULSO (Q07635), DPOL3_SULSH (O05706), DPOL3_SULSO (P95979), 
DPOL_ABVP   (A4ZU91), DPOL_HIS1I  (Q25BI3), DPOL_IIV3   (Q196U0), 
DPOL_IIV6   (Q9QSK2), DPOL_OSHVF  (Q6R7C9), DPOL_THEAG  (O33845), 
DPOL_THEFM  (P74918), DPOL_THEG8  (Q9HH84), DPOL_THEHY  (Q9HH05), 
DPOL_THELI  (P30317), DPOM_AGABT  (P30322)
» More

UniProtKB/Swiss-Prot
False positive sequences
13 sequences

ACDG1_METTE (Q50539), ACDG2_METTE (Q9C4Z0), ACDG_METAC  (Q8TH44), 
C99L2_MOUSE (Q8BIF0), CRCB2_LEIXX (Q6AHI4), DEN_VZVD    (P09278), 
DEN_VZVO    (Q4JQX9), E2AK4_HUMAN (Q9P2K8), EIF3B_BOMMO (Q1HDZ5), 
PSTB1_VIBCH (Q9KU04), PSTB_THICR  (Q31I88), SYA_OCHA4   (A6X0E9), 
Y8444_DICDI (Q1ZXR0)
» More

PDB
[Detailed view]
166 PDB

1CLQ; 1D5A; 1IG9; 1IH7; 1Q8I; 1Q9X; 1Q9Y; 1QHT; 1QQC; 1S5J; 1TGO; 1WAF; 1WAJ; 1WN7; 1WNS; 1XHX; 1XHZ; 1XI1; 2ATQ; 2DTU; 2DY4; 2EX3; 2GV9; 2JGU; 2OYQ; 2OZM; 2OZS; 2P5G; 2P5O; 2PY5; 2PYJ; 2PYL; 2PZS; 2VWJ; 2VWK; 2XHB; 3A2F; 3CFO; 3CFP; 3CFR; 3CQ8; 3IAY; 3K57; 3K58; 3K59; 3K5L; 3K5M; 3K5N; 3K5O; 3KD1; 3KD5; 3L8B; 3LDS; 3LZI; 3LZJ; 3MAQ; 3NAE; 3NCI; 3NDK; 3NE6; 3NGI; 3NHG; 3QEI; 3QEP; 3QER; 3QES; 3QET; 3QEV; 3QEW; 3QEX; 3QNN; 3QNO; 3RMA; 3RMB; 3RMC; 3RMD; 3RWU; 3S9H; 3SCX; 3SI6; 3SJJ; 3SNN; 3SPY; 3SPZ; 3SQ0; 3SQ1; 3SQ2; 3SQ4; 3SUN; 3SUO; 3SUP; 3SUQ; 3TAB; 3TAE; 3TAF; 3TAG; 3UIQ; 4AHC; 4AIL; 4B08; 4DTJ; 4DTM; 4DTN; 4DTO; 4DTP; 4DTR; 4DTS; 4DTU; 4DTX; 4DU1; 4DU3; 4DU4; 4E3S; 4FJ5; 4FJ7; 4FJ8; 4FJ9; 4FJG; 4FJH; 4FJI; 4FJJ; 4FJK; 4FJL; 4FJM; 4FJN; 4FJX; 4FK0; 4FK2; 4FK4; 4FLT; 4FLU; 4FLV; 4FLW; 4FLX; 4FLY; 4FLZ; 4FM0; 4FM1; 4FM2; 4FVM; 4FXD; 4I9L; 4I9Q; 4J2A; 4J2B; 4J2D; 4J2E; 4K8X; 4KHN; 4KHQ; 4KHS; 4KHU; 4KHW; 4KHY; 4KI4; 4KI6; 4M3R; 4M3T; 4M3U; 4M3W; 4M3X; 4M3Y; 4M3Z; 4M41; 4M42; 4M45
» More

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