Entry: PS00201

General information about the entry
Entry name FLAVODOXIN
Accession number PS00201
Entry type PATTERN
Date APR-1990 (CREATED); APR-2006 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00178
Name and characterization of the entry
DescriptionFlavodoxin signature.
Pattern [LIV]-[LIVFY]-[FY]-x-[ST]-{V}-x-[AGC]-x-T-{P}-x(2)-A-{L}-x-[LIV].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 61 hits in 61 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 56 hits in 56 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 5 hits in 5 different sequences
  • Number of known missed hits: 10
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 2
  • Precision (true hits / (true hits + false positives)): 91.80 %
  • Recall (true hits / (true hits + false negatives)): 84.85 %
Comments
  • Taxonomic range: Archaea, Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 2
Cross-references
UniProtKB/Swiss-Prot True positive hits:
DFA2_THEEB  (Q8DJ55), DFA3_SYNY3  (P74373), DFA4_NOSS1  (Q8YNW7), 
DFA4_SYNY3  (P72721), DFA5_NOSS1  (Q8Z0C1), DFA6_NOSS1  (Q8YQE2), 
FLAV_ANASO  (P0A3E0), FLAV_AQUAE  (O67866), FLAV_AZOCH  (P23001), 
FLAV_AZOVI  (P00324), FLAV_BUCAI  (P57385), FLAV_BUCAP  (Q8K9N5), 
FLAV_BUCBP  (Q89AK0), FLAV_CHOCR  (P14070), FLAV_CLOBE  (P00322), 
FLAV_CLOSA  (P18855), FLAV_DESAD  (P18086), FLAV_DESDE  (P26492), 
FLAV_DESGI  (Q01095), FLAV_DESVH  (P00323), FLAV_DESVM  (P71165), 
FLAV_ECO57  (P61951), FLAV_ECOL6  (P61950), FLAV_ECOLI  (P61949), 
FLAV_ENTAG  (P28579), FLAV_HAEIN  (P44562), FLAV_KLEPN  (O07026), 
FLAV_MEGEL  (P00321), FLAV_NOSS1  (P0A3D9), FLAV_NOSSM  (P35707), 
FLAV_RHOCB  (P52967), FLAV_SALTY  (Q8ZQX1), FLAV_SHIFL  (Q83S80), 
FLAV_SYNE7  (P10340), FLAV_SYNP2  (P31158), FLAV_SYNY3  (P27319), 
FLAV_TREPA  (O83895), FLAW_BACSU  (O34589), FLAW_DESDA  (P80312), 
FLAW_DESGI  (Q01096), FLAW_ECO57  (P0ABY6), FLAW_ECOL6  (P0ABY5), 
FLAW_ECOLI  (P0ABY4), FLAW_ENTAG  (P71169), FLAW_KLEOX  (P56268), 
FLAW_KLEPN  (P04668), FLAW_SALTI  (P0A1N7), FLAW_SALTY  (P0A1N6), 
FPRA1_CLOAB (Q97K92), FPRA2_CLOAB (Q97GC0), FPRA_METTM  (Q50497), 
FPRA_RHOCB  (D5ARY8), HEMG_ECO57  (P0ACB6), HEMG_ECOL6  (P0ACB5), 
HEMG_ECOLI  (P0ACB4), HEMG_SALTY  (Q9L6L1)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
FLAV_BACSU  (O34737), FLAV_HELPJ  (Q9ZK53), FLAV_HELPY  (O25776), 
FLAV_TRIEI  (O52659), FPAA_METTH  (O27404), FPRA_METJA  (Q58158), 
FPRA_MOOTA  (Q9FDN7), FPRA_RHOCA  (P0CY93), PNO_CRYPV   (Q968X7), 
PNO_EUGGR   (Q94IN5)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
FLAW_AZOCH  (P23002), FLAW_AZOVI  (P52964)
False positive hits (sequences which do not belong to the set under consideration):
PLRX1_ARATH (Q9LJ64), S22AI_MOUSE (Q78KK3), S22AI_RAT   (Q6AY78), 
URE1_BRAJA  (Q89UG0), WRBA_METBF  (Q46B88)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]
1AG9; 1AHN; 1AKQ; 1AKR; 1AKT; 1AKU; 1AKV; 1AKW; 1AZL; 1BU5; 1C7E; 1C7F; 1CZH; 1CZK; 1CZL; 1CZN; 1CZO; 1CZR; 1CZU; 1D03; 1D04; 1DX9; 1F4P; 1FLA; 1FLD; 1FLN; 1FLV; 1FTG; 1FVX; 1FX1; 1I1O; 1J8Q; 1J9E; 1J9G; 1OBO; 1OBV; 1OFV; 1QHE; 1RCF; 1WSB; 1WSW; 1XT6; 1XYV; 1XYY; 1YOB; 2ARK; 2FAX; 2FCR; 2FDX; 2FLV; 2FOX; 2FVX; 2FX2; 2FZ5; 2KQU; 2OHH; 2OHI; 2OHJ; 2V5U; 2V5V; 2WC1; 3ESX; 3ESY; 3ESZ; 3F6R; 3F6S; 3F90; 3FX2; 3KAP; 3KAQ; 3NLL; 4FX2; 4HEQ; 4NLL; 4NUL; 5FX2; 5NLL; 5NUL; 5ULL; 6NUL;

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