Entry: PS00208

General information about the entry
Entry name PLANT_GLOBIN
Accession number PS00208
Entry type PATTERN
Date APR-1990 (CREATED); DEC-2001 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00183
Name and characterization of the entry
DescriptionPlant hemoglobins signature.
Pattern [SN]-P-x-[LV]-x(2)-H-A-x(3)-F.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 57 hits in 57 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 47 hits in 47 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 10 hits in 10 different sequences
  • Number of known missed hits: 1
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 1
  • Precision (true hits / (true hits + false positives)): 82.46 %
  • Recall (true hits / (true hits + false negatives)): 97.92 %
Comments
  • Taxonomic range: Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • `Interesting' site in the pattern: 6,heme_iron
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
HBL0_PHYPA  (Q9M630), HBL1_ARATH  (O24520), HBL1_ORYSJ  (O04986), 
HBL2_ARATH  (O24521), HBL2_BRANA  (Q941Q2), HBL2_GOSHI  (Q93Y92), 
HBL2_ORYSJ  (O04985), HBL2_SOLLC  (Q941P9), HBL3_ORYSJ  (Q94FT8), 
HBL4_ORYSJ  (Q94FT7), HBL_HORVU   (Q42831), HBL_MAIZE   (Q9FY42), 
HBL_TRETO   (P07803), HBL_ZEAMP   (Q9M593), HBP1_CASGL  (P08054), 
HBP2_CASGL  (P23244), HBPA_CASGL  (Q42665), HBPL_PARAD  (P68168), 
HBPL_PARRI  (P68169), LGB1_LUPLU  (P02239), LGB1_MEDSA  (P09187), 
LGB1_MEDTR  (P27992), LGB1_PEA    (P02233), LGB1_SOYBN  (P02235), 
LGB1_VICFA  (P02232), LGB1_VIGUN  (Q43236), LGB2_LUPLU  (P02240), 
LGB2_MEDTR  (P27993), LGB2_PEA    (O48668), LGB2_PHAVU  (O04939), 
LGB2_SESRO  (P14848), LGB2_SOYBN  (P02236), LGB2_VIGUN  (Q43296), 
LGB3_MEDSA  (P14962), LGB3_PEA    (O80405), LGB3_SESRO  (P10816), 
LGB3_SOYBN  (P02237), LGB3_VICFA  (P93849), LGB4_MEDSA  (P28010), 
LGB4_PEA    (Q9SAZ1), LGB5_PEA    (O48665), LGB6_PEA    (Q9SAZ0), 
LGBA_PHAVU  (P02234), LGBA_SOYBN  (P02238), LGB_CANLI   (P42511), 
LGB_LOTJA   (Q9FEP8), LGB_PSOTE   (P27199)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
LGB2_VICFA  (P93848)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
HBL_PSEMZ   (P85943)
False positive hits (sequences which do not belong to the set under consideration):
BCP1_DEBHA  (Q6BII5), F91A1_DANRE (Q6TEP1), F91A1_HUMAN (Q658Y4), 
F91A1_MOUSE (Q3UVG3), ISPG_CHLAB  (Q5L669), POL_HTL32   (Q0R5R2), 
POL_HTL3P   (Q4U0X6), PPK3_SCHPO  (O13733), RPN1_ENCCU  (Q8SS65), 
SEC2_YEAST  (P17065)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1BIN; 1D8U; 1FSL; 1GDI; 1GDJ; 1GDK; 1GDL; 1LH1; 1LH2; 1LH3; 1LH5; 1LH6; 1LH7; 2GDM; 2GNV; 2GNW; 2LH1; 2LH2; 2LH3; 2LH5; 2LH6; 2LH7; 2OIF; 2R50; 3QQQ; 3QQR; 3ZHW;

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