Entry: PS00208

General information about the entry

Entry name [info] PLANT_GLOBIN
Accession [info] PS00208
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); DEC-2001 (DATA UPDATE); APR-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC00183

Name and characterization of the entry

Description [info] Plant hemoglobins signature.
Pattern [info]

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_06 which contains 548'586 sequence entries.

Total number of hits 57 in 57 different sequences
Number of true positive hits 47 in 47 different sequences
Number of 'unknown' hits
Number of false positive hits 10 in 10 different sequences
Number of false negative sequences 1
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 82.46 %
Recall (true positives / (true positives + false negatives)) 97.92 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Site [info] heme_iron at position 6
Version [info] 1

Cross-references [info]

True positive sequences
47 sequences

HBL0_PHYPA  (Q9M630), HBL1_ARATH  (O24520), HBL1_ORYSJ  (O04986), 
HBL2_ARATH  (O24521), HBL2_BRANA  (Q941Q2), HBL2_GOSHI  (Q93Y92), 
HBL2_ORYSJ  (O04985), HBL2_SOLLC  (Q941P9), HBL3_ORYSJ  (Q94FT8), 
HBL4_ORYSJ  (Q94FT7), HBL_HORVU   (Q42831), HBL_MAIZE   (Q9FY42), 
HBL_TRETO   (P07803), HBL_ZEAMP   (Q9M593), HBP1_CASGL  (P08054), 
HBP2_CASGL  (P23244), HBPA_CASGL  (Q42665), HBPL_PARAD  (P68168), 
HBPL_PARRI  (P68169), LGB1_LUPLU  (P02239), LGB1_MEDSA  (P09187), 
LGB1_MEDTR  (P27992), LGB1_PEA    (P02233), LGB1_SOYBN  (P02235), 
LGB1_VICFA  (P02232), LGB1_VIGUN  (Q43236), LGB2_LUPLU  (P02240), 
LGB2_MEDTR  (P27993), LGB2_PEA    (O48668), LGB2_PHAVU  (O04939), 
LGB2_SESRO  (P14848), LGB2_SOYBN  (P02236), LGB2_VIGUN  (Q43296), 
LGB3_MEDSA  (P14962), LGB3_PEA    (O80405), LGB3_SESRO  (P10816), 
LGB3_SOYBN  (P02237), LGB3_VICFA  (P93849), LGB4_MEDSA  (P28010), 
LGB4_PEA    (Q9SAZ1), LGB5_PEA    (O48665), LGB6_PEA    (Q9SAZ0), 
LGBA_PHAVU  (P02234), LGBA_SOYBN  (P02238), LGB_CANLI   (P42511), 
LGB_LOTJA   (Q9FEP8), LGB_PSOTE   (P27199)
» More

False negative sequences
1 sequence

LGB2_VICFA  (P93848)

'Partial' sequences
1 sequence

HBL_PSEMZ   (P85943)

False positive sequences
10 sequences

BCP1_DEBHA  (Q6BII5), F91A1_DANRE (Q6TEP1), F91A1_HUMAN (Q658Y4), 
F91A1_MOUSE (Q3UVG3), ISPG_CHLAB  (Q5L669), POL_HTL32   (Q0R5R2), 
POL_HTL3P   (Q4U0X6), PPK3_SCHPO  (O13733), RPN1_ENCCU  (Q8SS65), 
SEC2_YEAST  (P17065)
» More

[Detailed view]
27 PDB

1BIN; 1D8U; 1FSL; 1GDI; 1GDJ; 1GDK; 1GDL; 1LH1; 1LH2; 1LH3; 1LH5; 1LH6; 1LH7; 2GDM; 2GNV; 2GNW; 2LH1; 2LH2; 2LH3; 2LH5; 2LH6; 2LH7; 2OIF; 2R50; 3QQQ; 3QQR; 3ZHW
» More

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