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| Entry: PS00213 |
| General information about the entry | |
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| Entry name | LIPOCALIN |
| Accession number | PS00213 |
| Entry type | PATTERN |
| Date | APR-1990 (CREATED); DEC-2004 (DATA UPDATE); APR-2013 (INFO UPDATE). |
| PROSITE Documentation | PDOC00187 |
| Name and characterization of the entry | |
| Description | Lipocalin signature. |
| Pattern | [DENG]-{A}-[DENQGSTARK]-x(0,2)-[DENQARK]-[LIVFY]-{CP}-G-{C}-W-[FYWLRH]- {D}-[LIVMTA]. |
| Numerical results | |
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| Comments | |
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| Cross-references | |
| UniProtKB/Swiss-Prot | True positive hits:ALL1_HORSE (Q95182), ALL2_CANFA (O18874), ALL4_FELCA (Q5VFH6), AMBP_BOVIN (P00978), AMBP_HUMAN (P02760), AMBP_MESAU (Q60559), AMBP_MOUSE (Q07456), AMBP_PIG (P04366), AMBP_RAT (Q64240), APHR_CRICR (P09465), APHR_MESAU (Q9Z1I7), APOD_BOVIN (Q32KY0), APOD_CAVPO (P51909), APOD_HUMAN (P05090), APOD_MACFA (Q8SPI0), APOD_MOUSE (P51910), APOD_RABIT (P37153), APOD_RAT (P23593), BBP_PIEBR (P09464), BLC_CITFR (Q46036), BLC_ECO57 (P0A902), BLC_ECOLI (P0A901), BLC_VIBCH (Q08790), CO8G_HUMAN (P07360), CO8G_MOUSE (Q8VCG4), CO8G_RABIT (Q28679), CRA2_HOMGA (P80007), EXFAB_CHICK (P21760), EXFAB_COTJA (Q9I9P7), ICYA_MANSE (P00305), ICYB_MANSE (Q00630), LACB1_CANFA (P33685), LACB1_EQUAS (P13613), LACB1_FELCA (P33687), LACB1_HORSE (P02758), LACB2_CANFA (P33686), LACB2_EQUAS (P19647), LACB2_FELCA (P21664), LACB2_HORSE (P07380), LACB3_FELCA (P33688), LACB_BOVIN (P02754), LACB_BUBBU (P02755), LACB_CAPHI (P02756), LACB_OVIMU (P67975), LACB_PIG (P04119), LACB_SHEEP (P67976), LCN10_HUMAN (Q6JVE6), LCN10_MOUSE (Q810Z1), LCN15_HUMAN (Q6UWW0), LCN5_MOUSE (A2AJB7), LCN5_RAT (P06911), LCN6_HUMAN (P62502), LCN6_MACMU (P62503), LCN9_HUMAN (Q8WX39), LIPO_BUFMA (Q01584), LOPAP_LONON (Q5ECE3), MUP17_MOUSE (B5X0G2), MUP1_MOUSE (P11588), MUP20_MOUSE (Q5FW60), MUP2_MOUSE (P11589), MUP3_MOUSE (P04939), MUP4_MOUSE (P11590), MUP5_MOUSE (P11591), MUP6_MOUSE (P02762), MUP_RAT (P02761), NGAL_HUMAN (P80188), NGAL_MOUSE (P11672), OBP1_HYSCR (P81647), OBP2_HYSCR (P81648), OBP2_RABIT (C0HJA6), OBP_BOVIN (P07435), OBP_RAT (P08937), OLFA_RANPI (P06910), PAEP_HUMAN (P09466), PAP6_ARATH (Q9LW57), PBAS_RAT (P15399), PTGDS_GORGO (Q8WNM1), PTGDS_HUMAN (P41222), PTGDS_MACFU (Q9TUI1), PTGDS_MOUSE (O09114), PTGDS_PONPY (Q8WNM0), PTGDS_RAT (P22057), PUP18_ARATH (Q9C508), PURP_CHICK (P08938), RET4A_ONCMY (P24774), RET4B_ONCMY (P24775), RET4_BOVIN (P18902), RET4_CHICK (P41263), RET4_HORSE (Q28369), RET4_HUMAN (P02753), RET4_MOUSE (Q00724), RET4_PANTR (P61641), RET4_PIG (P27485), RET4_RABIT (P06912), RET4_RAT (P04916), RET4_XENLA (P06172), SAL_PIG (P81608), VDE_ARATH (Q39249), VDE_LACSA (Q40251), VDE_TOBAC (Q40593), YR877_MIMIV (Q5URA7)False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile): A1AG1_HUMAN (P02763), A1AG1_MOUSE (Q60590), A1AG1_MUSCR (P21350), A1AG2_HUMAN (P19652), A1AG2_MOUSE (P07361), A1AG3_MOUSE (Q63805), A1AG8_MUSCR (P21352), A1AG_BOVIN (Q3SZR3), A1AG_RABIT (P25227), A1AG_RAT (P02764), ALL1_CANFA (O18873), ALL2_BOVIN (Q28133), AMBP_PLEPL (P36992), BLG4_BLAGE (P54962), CRC1_HOMGA (P80029), ESP4_ZOOVI (P35578), LACB_MACEU (Q29614), LACB_MACGI (P11944), LACB_TRIVU (Q29146), LAZA_SCHAM (P49291), LCN12_HUMAN (Q6JVE5), LCN12_MOUSE (Q6JVL5), LCN12_RAT (B3EY83), LCN1_HUMAN (P31025), LCN1_PIG (P53715), LCN9_MOUSE (Q9D267), LLPA_MACEU (P20462), LLPB_MACEU (Q8SQ30), LLP_TRIVU (Q29144), NGAL_RAT (P30152), OBP1_RABIT (C0HJA7), OBP2A_HUMAN (Q9NY56), OBP2A_MOUSE (Q8K1H9), OBP2B_HUMAN (Q9NPH6), OBP3_RABIT (C0HJA9), OBP_PIG (P81245), PBAS_MOUSE (O08976), PTGDS_BOVIN (O02853), PTGDS_CANFA (Q9XS65), PTGDS_FELCA (Q29487), PTGDS_HORSE (O97921), PTGDS_PIG (Q29095), PTGDS_SHEEP (Q9XSM0), PTGDS_URSAR (Q29562), TRE1_ARATH (Q9SU50), TRIC_TRIVU (Q29147), UCAL_HORSE (Q28388), VEGP1_RAT (P20289), VEGP2_RAT (P41244), VNS1_MOUSE (Q62471), VNS2_MOUSE (Q62472)`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences): ALL21_HORSE (P81216), ALL22_HORSE (P81217), AVP2_CAVPO (P83508), MUP2_RAT (P85844), MUP8_MOUSE (P04938), MUP_CAVPO (P83507), MUP_RATRT (P84855)False positive hits (sequences which do not belong to the set under consideration): ABCA2_HUMAN (Q9BZC7), ABCA2_MOUSE (P41234), ABCA2_RAT (Q9ESR9), ACHA_NAJNA (P14143), ACHA_NATTE (P14144), ACUI_ECOLI (P26646), ALYP_PSESO (Q06365), AMPP1_CHAGB (Q2H8T2), ARAG_PSE14 (Q48IS7), ARAG_PSEPF (Q3K8M7), ARAG_PSESM (Q882I8), ARAG_PSEU2 (Q4ZTW1), ARNT2_PSEPF (Q3KCB9), ASA1_ENTFA (P17953), ATCS_SYNE7 (P37279), ATF1_YEAST (P40353), ATG26_PICAN (A7KAK6), ATG5_ASHGO (Q75BY9), BAMA_BUCAP (Q8K9S5), BBS2_DANRE (Q98SP7), CAPP_CORCT (Q93MH3), CAPP_COREF (Q8RQL3), CAPP_CORGL (P12880), CAPSD_HV19S (O57043), CAPSD_TTVD1 (Q91PQ1), CCS1_THEEB (Q8DL16), CDF1_CAEEL (Q95QW4), CENPE_MOUSE (Q6RT24), CIC_DROME (Q9U1H0), CIC_HUMAN (Q96RK0), CIC_MOUSE (Q924A2), COAX_RALME (Q1LSB6), COX3_BACP3 (Q03439), COX3_BACPE (Q04442), COX3_BACSU (P24012), CRL_ERWCT (Q6D1I2), CRL_PHOPR (Q6LTX4), CY561_MOUSE (Q60720), CY561_PIG (Q95245), CYSG3_AERHH (A0KQJ4), CYSG_BUCAI (P57500), DAPB_BOTFB (A6SL49), DAPB_CHAGB (Q2HF90), DAPB_COLGM (E3QKD2), DAPB_GROCL (F0XS04), DAPB_MAGO7 (A4QYQ5), DAPB_METAQ (E9ED72), DAPB_METAR (E9ETL5), DAPB_NECH7 (C7YYG9), DAPB_NEUCR (Q7SHU8), DAPB_PHANO (Q0UVK7), DAPB_PODAN (B2A951), DAPB_PYRTR (B2WC36), DAPB_PYRTT (E3S9K3), DAPB_SCLS1 (A7EQZ1), DAPB_SORMK (D1Z9B4), DAPB_TUBMM (D5GM60), DAPB_VERA1 (C9SJ15), DPO1_CALBD (Q59156), EDL3_ARATH (Q93ZT5), ENGB_XANC5 (Q3BXK1), ERYA1_SACER (Q03131), ERYA2_SACER (Q03132), EXPB1_MAIZE (P58738), EXPB9_MAIZE (Q07154), FCN1_HUMAN (O00602), FMO1_CANFA (Q95LA2), FMO1_HUMAN (Q01740), FMO1_MOUSE (P50285), FMO1_PIG (P16549), FMO1_RABIT (P17636), FMO1_RAT (P36365), FOSB_GEOTN (A4IS40), FRG1_HUMAN (Q14331), FRG1_MOUSE (P97376), FRG1_TAKRU (O73747), GASP1_HUMAN (Q5JY77), GASP1_MOUSE (Q5U4C1), GASP1_RAT (Q920R4), GCST_PSEAE (Q9HTX5), GCST_PSEPK (Q88CI7), GCST_PSESM (Q88AS0), GPBAR_BOVIN (Q862A9), GSTU8_ARATH (Q9SR36), GSTX2_TOBAC (Q03663), GSTX3_TOBAC (Q03664), HOXQ_AZOVI (P40594), HUPQ_AZOCH (Q43957), HUTH_PHOLL (Q7N296), HUTH_PSEFS (Q8VMR3), HUTH_PSEPK (Q88CZ7), HUTH_PSEPU (P21310), HUTH_YERPE (Q8ZA10), HUTH_YERPS (Q664B8), HYBF_SALTI (P64422), HYBF_SALTY (P64421), INAA_ECOLI (P27294), INT2_ARATH (Q9C757), LBN_BOVIN (Q8MI28), LGI3_HUMAN (Q8N145), LGI3_MACFA (Q4R4H3), LGI3_MOUSE (Q8K406), LGI3_PANTR (Q1EGL0), LGT_BACLD (Q65EF1), LPQB_THEFY (Q47LZ5), MANBA_CAEEL (Q93324), MDTD_SERP5 (A8GHR1), ME3L2_HUMAN (A8K0S8), MED6_CRYNB (P0CO75), MED6_CRYNJ (P0CO74), MEIS3_HUMAN (Q99687), MEIS3_MOUSE (P97368), MEND_MYCVP (A1T3R3), MGDG2_ARATH (O82730), MRC2_HUMAN (Q9UBG0), MRC2_MOUSE (Q64449), MRC2_RAT (Q4TU93), MSHD_COREF (Q8FMN5), MTAD_DESVH (Q72B14), MTAD_DESVV (A1VD37), MTM1_ARATH (Q944H5), MUG60_SCHPO (O74359), MUTA_MYCBO (P65486), MUTA_MYCTU (P65485), NHAA1_CLAM3 (A5CM04), NHAB_ACTP2 (A3MZ40), NHAB_ACTP7 (B3H0G7), NHAB_ACTPJ (B0BT71), NHAB_SHESH (A8FW97), NLRC3_HUMAN (Q7RTR2), OBG_DESRM (A4J7I9), OBG_PHEZH (B4RD64), OPGH_ECO57 (P62518), OPGH_ECOL6 (Q8FIS3), OPGH_ECOLI (P62517), OPGH_SALTI (Q8Z7L8), OPGH_SALTY (Q8ZQ26), OPGH_SHIFL (P62519), PDXH_RHOSR (Q0S6R1), PGM2_HUMAN (Q96G03), PGM2_MOUSE (Q7TSV4), PGM2_PONAB (Q5RFI8), PHSA_ARATH (Q9C6S4), PID9_FUSSO (Q12645), PLXB1_HUMAN (O43157), PLXB1_MOUSE (Q8CJH3), PNCB_BURMA (Q62LW1), PNCB_BURPS (Q63S63), PNCB_METAC (Q8TMW6), PNCB_METMA (Q8PSJ3), PNCB_XYLFA (Q9PED1), PNCB_XYLFT (Q87EC4), POLG_ZYMVR (Q89330), PQSA_PSEAE (Q9I4X3), PRMC_BORPE (Q7W022), PRND_PSEFL (P95483), PROB2_RHILO (Q989S7), PROB_NITWN (Q3SVI1), PTV3B_BACSU (P40739), R1AB_BC279 (P0C6V9), R1AB_BCHK3 (P0C6W2), R1AB_BCRP3 (P0C6W6), R1AB_CVHSA (P0C6X7), R20K_CLOPA (P23161), RDRP_CPMV1 (Q33339), RPOB_SPIOL (P11703), S226B_XENLA (Q66J52), S22AK_MOUSE (Q80UJ1), S27A1_BOVIN (Q3ZKN0), S27A1_HUMAN (Q6PCB7), S27A1_MOUSE (Q60714), S27A1_RAT (P97849), S27A4_HUMAN (Q6P1M0), S27A4_MACFA (Q4R3Y4), S27A4_MOUSE (Q91VE0), S27A4_PONAB (Q5RDY4), SCN60_DROME (Q9W0Y8), SHO1A_HORWE (D6PVB4), SHO1B_HORWE (D6PVB5), SHO1_AJECH (C6HFQ7), SHO1_AJECN (A6QTM4), SHO1_AJEDR (C5GIQ8), SHO1_AJEDS (C5JGE5), SHO1_ARTBC (D4ARB8), SHO1_ARTOC (C5FH98), SHO1_ASPCL (A1CAL7), SHO1_ASPFC (B0Y3Z4), SHO1_ASPFN (B8NEM4), SHO1_ASPFU (Q4WUG9), SHO1_ASPNC (A2QGW1), SHO1_ASPOR (Q2U7N9), SHO1_CANAL (Q5AQ36), SHO1_CANAW (C4YDC4), SHO1_CANDC (B9W8T5), SHO1_CANTT (C5MB30), SHO1_CHAGB (Q2H3I7), SHO1_CLAL4 (C4Y1G1), SHO1_CLALS (B8R1V5), SHO1_COLGM (E3QNZ1), SHO1_DEBHA (Q6BVC2), SHO1_EMENI (Q5AVI2), SHO1_LEPMJ (E5AD87), SHO1_LODEL (A5E1V8), SHO1_MAGO7 (Q2KEW0), SHO1_METAR (E9EM69), SHO1_NECH7 (C7Z504), SHO1_NEOFI (A1DEZ0), SHO1_NEUCR (Q7SGL6), SHO1_PARBD (C1GJ63), SHO1_PARBP (C0S7Q7), SHO1_PENCW (B6HR44), SHO1_PENMQ (B6QEE0), SHO1_PICGU (A5DR93), SHO1_PODAN (B2ANF9), SHO1_PYRTR (B2VV00), SHO1_PYRTT (E3RIP0), SHO1_SCLS1 (A7F1F4), SHO1_SORMK (D1ZRK4), SHO1_TALSN (B8MD74), SHO1_TRIVH (D4DA58), SHO1_UNCRE (C4JLG3), SHO1_VERA1 (C9SA05), SHO1_YARLI (Q6CAC5), SINL2_ARATH (Q9C6H3), SPNS1_BOVIN (Q08DX7), SPNS1_MOUSE (Q8R0G7), SPNS1_RAT (Q2YDU8), SPNS2_XENTR (B0JZE1), SPNS3_MOUSE (Q9D232), SUH_DROME (P28159), SYE_RALPJ (B2U9R2), SYFM_HUMAN (O95363), SYFM_MOUSE (Q99M01), SYFM_RAT (Q6AYQ3), SYVC_ENCCU (Q8SS27), TAMA_ECO57 (P0ADE5), TAMA_ECOLI (P0ADE4), TERA_ALCSP (P18778), TIM17_SCHPO (P87130), TIM17_YEAST (P39515), TINAL_HUMAN (Q9GZM7), TINAL_MOUSE (Q99JR5), TINAL_RAT (Q9EQT5), TMCA_AERPE (Q9YBQ6), TMCA_PHOAA (C7BGY4), TNPO_DICDI (Q55CQ7), TPRGL_BOVIN (Q32LJ4), TPRGL_HUMAN (Q5T0D9), TPRGL_MOUSE (Q9DBS2), TPRGL_RAT (A8WCF8), TPS3_YEAST (P38426), TRMB_BACLD (Q65G12), TRMB_CLOTH (A3DBL4), TRMB_LISMF (Q71Z52), TRMB_LISMO (Q8Y6R8), UBR2_HUMAN (Q8IWV8), UBR2_MOUSE (Q6WKZ8), UHRF1_MOUSE (Q8VDF2), UHRF1_RAT (Q7TPK1), UREF_SACD2 (Q21P92), VE4_HPV47 (P22421), VE6_HPV41 (P27555), VIF_SIVMK (P05902), VM2FL_PROFL (P18619), VM3SB_TRIST (Q3HTN2), WDR33_HUMAN (Q9C0J8), WHIA_BIFA0 (B8DUH3), Y1903_DEIRA (Q9RT62), Y260_TREPA (O83284), Y2886_MYCTU (P65045), Y2910_MYCBO (P65046), Y387_HAEIN (P44680), Y610_PARUW (Q6MDL5)Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits: [Clustal format, color, condensed view]
[Clustal format, color]
[Clustal format, plain text]
[Fasta format]
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| PDB [Detailed view] |
1AQB; 1B0O; 1B8E; 1BBP; 1BEB; 1BRP; 1BRQ; 1BSO; 1BSQ; 1BSY; 1CJ5; 1DF3; 1DFV; 1DV9; 1EPA; 1EPB; 1ERB; 1EW3; 1EXS; 1FEL; 1FEM; 1FEN; 1G85; 1GKA; 1GM6; 1GT1; 1GT3; 1GT4; 1GT5; 1GX8; 1GX9; 1GXA; 1HBP; 1HBQ; 1HN2; 1I04; 1I05; 1I06; 1IIU; 1IW2; 1JV4; 1JYD; 1JYJ; 1JZU; 1KT3; 1KT4; 1KT5; 1KT6; 1KT7; 1KXO; 1L6M; 1LF7; 1LKE; 1LNM; 1MUP; 1N0S; 1NGL; 1OBP; 1PBO; 1QAB; 1QG5; 1QQS; 1QWD; 1QY0; 1QY1; 1QY2; 1RBP; 1RLB; 1T0V; 1UZ2; 1X71; 1X89; 1X8U; 1YP6; 1YP7; 1YUP; 1Z24; 1ZND; 1ZNE; 1ZNG; 1ZNH; 1ZNK; 1ZNL; 2A2G; 2A2U; 2ACO; 2AKQ; 2APD; 2BLG; 2DM5; 2E4J; 2GJ5; 2KT4; 2KTD; 2L9C; 2LB6; 2LBV; 2NND; 2NNE; 2OVA; 2OVD; 2OVE; 2OZQ; 2Q2M; 2Q2P; 2Q39; 2QOS; 2R56; 2RD7; 2RQ0; 2WQ9; 2WQA; 2WR6; 2WWP; 2XST; 3BLG; 3BSZ; 3BY0; 3CBC; 3CMP; 3CQN; 3CQR; 3DSZ; 3DTQ; 3FIQ; 3FMZ; 3FW4; 3FW5; 3HWD; 3HWE; 3HWF; 3HWG; 3I0A; 3K3L; 3KFF; 3KFG; 3KFH; 3KFI; 3KZA; 3L4R; 3MBT; 3NPO; 3NQ3; 3NQ9; 3O19; 3O22; 3O2Y; 3OJY; 3PEC; 3PED; 3PH5; 3PH6; 3QKG; 3S26; 3T1D; 3TF6; 3TZS; 3U03; 3U0D; 3UEU; 3UEV; 3UEW; 3UEX; 4DQ3; 4DQ4; 4GH7; 4GNY; 4IMN; 4IMO; |
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