Entry: PS00213

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General information about the entry

Entry name [info] LIPOCALIN
Accession [info] PS00213
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); DEC-2004 (DATA UPDATE); SEP-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00187

Name and characterization of the entry

Description [info] Lipocalin signature.
Pattern [info]
[DENG]-{A}-[DENQGSTARK]-x(0,2)-[DENQARK]-[LIVFY]-{CP}-G-{C}-W-[FYWLRH]-
{D}-[LIVMTA].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_10 which contains 546'790 sequence entries.


Total number of hits 388 in 383 different sequences
Number of true positive hits 103 in 103 different sequences
Number of 'unknown' hits
Number of false positive hits 285 in 280 different sequences
Number of false negative sequences 49
Number of 'partial' sequences 7
Precision (true positives / (true positives + false positives)) 26.55 %
Recall (true positives / (true positives + false negatives)) 67.76 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info] 4
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
103 sequences

ALL1_HORSE  (Q95182), ALL2_CANFA  (O18874), ALL4_FELCA  (Q5VFH6), 
AMBP_BOVIN  (P00978), AMBP_HUMAN  (P02760), AMBP_MESAU  (Q60559), 
AMBP_MOUSE  (Q07456), AMBP_PIG    (P04366), AMBP_RAT    (Q64240), 
APHR_CRICR  (P09465), APHR_MESAU  (Q9Z1I7), APOD_BOVIN  (Q32KY0), 
APOD_CAVPO  (P51909), APOD_HUMAN  (P05090), APOD_MACFA  (Q8SPI0), 
APOD_MOUSE  (P51910), APOD_RABIT  (P37153), APOD_RAT    (P23593), 
BBP_PIEBR   (P09464), BLC_CITFR   (Q46036), BLC_ECO57   (P0A902), 
BLC_ECOLI   (P0A901), BLC_VIBCH   (Q08790), CO8G_HUMAN  (P07360), 
CO8G_MOUSE  (Q8VCG4), CO8G_RABIT  (Q28679), CRA2_HOMGA  (P80007), 
EXFAB_CHICK (P21760), EXFAB_COTJA (Q9I9P7), ICYA_MANSE  (P00305), 
ICYB_MANSE  (Q00630), LACB1_CANFA (P33685), LACB1_EQUAS (P13613), 
LACB1_FELCA (P33687), LACB1_HORSE (P02758), LACB2_CANFA (P33686), 
LACB2_EQUAS (P19647), LACB2_FELCA (P21664), LACB2_HORSE (P07380), 
LACB3_FELCA (P33688), LACB_BOVIN  (P02754), LACB_BUBBU  (P02755), 
LACB_CAPHI  (P02756), LACB_OVIMU  (P67975), LACB_PIG    (P04119), 
LACB_SHEEP  (P67976), LCN10_HUMAN (Q6JVE6), LCN10_MOUSE (Q810Z1), 
LCN15_HUMAN (Q6UWW0), LCN5_MOUSE  (A2AJB7), LCN5_RAT    (P06911), 
LCN6_HUMAN  (P62502), LCN6_MACMU  (P62503), LCN9_HUMAN  (Q8WX39), 
LIPO_BUFMA  (Q01584), LOPAP_LONON (Q5ECE3), MUP17_MOUSE (B5X0G2), 
MUP1_MOUSE  (P11588), MUP20_MOUSE (Q5FW60), MUP2_MOUSE  (P11589), 
MUP3_MOUSE  (P04939), MUP4_MOUSE  (P11590), MUP5_MOUSE  (P11591), 
MUP6_MOUSE  (P02762), MUP_RAT     (P02761), NGAL_HUMAN  (P80188), 
NGAL_MOUSE  (P11672), OBP1_HYSCR  (P81647), OBP2_HYSCR  (P81648), 
OBP2_RABIT  (C0HJA6), OBP3_RABIT  (C0HJA9), OBP_BOVIN   (P07435), 
OBP_RAT     (P08937), OLFA_LITPI  (P06910), PAEP_HUMAN  (P09466), 
PAP6_ARATH  (Q9LW57), PBAS_RAT    (P15399), PTGDS_GORGO (Q8WNM1), 
PTGDS_HUMAN (P41222), PTGDS_MACFU (Q9TUI1), PTGDS_MOUSE (O09114), 
PTGDS_PONPY (Q8WNM0), PTGDS_RAT   (P22057), PUP18_ARATH (Q9C508), 
PURP_CHICK  (P08938), RET4A_ONCMY (P24774), RET4B_ONCMY (P24775), 
RET4_BOVIN  (P18902), RET4_CHICK  (P41263), RET4_HORSE  (Q28369), 
RET4_HUMAN  (P02753), RET4_MOUSE  (Q00724), RET4_PANTR  (P61641), 
RET4_PIG    (P27485), RET4_RABIT  (P06912), RET4_RAT    (P04916), 
RET4_XENLA  (P06172), SAL_PIG     (P81608), TRE1_ARATH  (Q9SU50), 
VDE_ARATH   (Q39249), VDE_LACSA   (Q40251), VDE_TOBAC   (Q40593), 
YR877_MIMIV (Q5URA7)
» More

UniProtKB/Swiss-Prot
False negative sequences
49 sequences

A1AG1_HUMAN (P02763), A1AG1_MOUSE (Q60590), A1AG1_MUSCR (P21350), 
A1AG2_HUMAN (P19652), A1AG2_MOUSE (P07361), A1AG3_MOUSE (Q63805), 
A1AG8_MUSCR (P21352), A1AG_BOVIN  (Q3SZR3), A1AG_RABIT  (P25227), 
A1AG_RAT    (P02764), ALL1_CANFA  (O18873), ALL2_BOVIN  (Q28133), 
AMBP_PLEPL  (P36992), BLG4_BLAGE  (P54962), CRC1_HOMGA  (P80029), 
ESP4_ZOOVI  (P35578), LACB_MACEU  (Q29614), LACB_MACGI  (P11944), 
LACB_TRIVU  (Q29146), LAZA_SCHAM  (P49291), LCN12_HUMAN (Q6JVE5), 
LCN12_MOUSE (Q6JVL5), LCN12_RAT   (B3EY83), LCN1_HUMAN  (P31025), 
LCN1_PIG    (P53715), LCN9_MOUSE  (Q9D267), LLPA_MACEU  (P20462), 
LLPB_MACEU  (Q8SQ30), LLP_TRIVU   (Q29144), NGAL_RAT    (P30152), 
OBP1_RABIT  (C0HJA7), OBP2A_HUMAN (Q9NY56), OBP2A_MOUSE (Q8K1H9), 
OBP2B_HUMAN (Q9NPH6), OBP_PIG     (P81245), PBAS_MOUSE  (O08976), 
PTGDS_BOVIN (O02853), PTGDS_CANFA (Q9XS65), PTGDS_FELCA (Q29487), 
PTGDS_HORSE (O97921), PTGDS_PIG   (Q29095), PTGDS_SHEEP (Q9XSM0), 
PTGDS_URSAR (Q29562), TRIC_TRIVU  (Q29147), UCAL_HORSE  (Q28388), 
VEGP1_RAT   (P20289), VEGP2_RAT   (P41244), VNS1_MOUSE  (Q62471), 
VNS2_MOUSE  (Q62472)
» More

UniProtKB/Swiss-Prot
'Partial' sequences
7 sequences

ALL21_HORSE (P81216), ALL22_HORSE (P81217), AVP2_CAVPO  (P83508), 
MUP2_RAT    (P85844), MUP8_MOUSE  (P04938), MUP_CAVPO   (P83507), 
MUP_RATRT   (P84855)
» More

UniProtKB/Swiss-Prot
False positive sequences
280 sequences

ABCA2_HUMAN (Q9BZC7), ABCA2_MOUSE (P41234), ABCA2_RAT   (Q9ESR9), 
ACHA_NAJNA  (P14143), ACHA_NATTE  (P14144), ACUI_ECOLI  (P26646), 
ALYP_PSESO  (Q06365), AMPP1_CHAGB (Q2H8T2), ARAG_PSE14  (Q48IS7), 
ARAG_PSEPF  (Q3K8M7), ARAG_PSESM  (Q882I8), ARAG_PSEU2  (Q4ZTW1), 
ARNT2_PSEPF (Q3KCB9), ASA1_ENTFA  (P17953), ATCS_SYNE7  (P37279), 
ATF1_YEAST  (P40353), ATG26_PICAN (A7KAK6), ATG5_ASHGO  (Q75BY9), 
BAMA_BUCAP  (Q8K9S5), BBS2_DANRE  (Q98SP7), CAPP_CORCT  (Q93MH3), 
CAPP_COREF  (Q8RQL3), CAPP_CORGL  (P12880), CAPSD_HV19S (O57043), 
CAPSD_TTVD1 (Q91PQ1), CCS1_THEEB  (Q8DL16), CDF1_CAEEL  (Q95QW4), 
CENPE_MOUSE (Q6RT24), CIC_DROME   (Q9U1H0), CIC_HUMAN   (Q96RK0), 
CIC_MOUSE   (Q924A2), COAX_RALME  (Q1LSB6), COX3_BACP3  (Q03439), 
COX3_BACPE  (Q04442), COX3_BACSU  (P24012), CRL_PECAS   (Q6D1I2), 
CRL_PHOPR   (Q6LTX4), CY561_MOUSE (Q60720), CY561_PIG   (Q95245), 
CYSG3_AERHH (A0KQJ4), CYSG_BUCAI  (P57500), DAPB_BOTFB  (A6SL49), 
DAPB_CHAGB  (Q2HF90), DAPB_COLGM  (E3QKD2), DAPB_GROCL  (F0XS04), 
DAPB_MAGO7  (A4QYQ5), DAPB_METAQ  (E9ED72), DAPB_METAR  (E9ETL5), 
DAPB_NECH7  (C7YYG9), DAPB_NEUCR  (Q7SHU8), DAPB_PHANO  (Q0UVK7), 
DAPB_PODAN  (B2A951), DAPB_PYRTR  (B2WC36), DAPB_PYRTT  (E3S9K3), 
DAPB_SCLS1  (A7EQZ1), DAPB_SORMK  (D1Z9B4), DAPB_TUBMM  (D5GM60), 
DAPB_VERA1  (C9SJ15), DPO1_CALBD  (Q59156), EDL3_ARATH  (Q93ZT5), 
ENGB_XANC5  (Q3BXK1), ERYA1_SACER (Q03131), ERYA2_SACER (Q03132), 
EXPB1_MAIZE (P58738), EXPB9_MAIZE (Q07154), FAT3_CAEEL  (Q23221), 
FCN1_HUMAN  (O00602), FMO1_CANFA  (Q95LA2), FMO1_HUMAN  (Q01740), 
FMO1_MOUSE  (P50285), FMO1_PIG    (P16549), FMO1_RABIT  (P17636), 
FMO1_RAT    (P36365), FOSB_GEOTN  (A4IS40), FRG1_HUMAN  (Q14331), 
FRG1_MOUSE  (P97376), FRG1_TAKRU  (O73747), GASP1_HUMAN (Q5JY77), 
GASP1_MOUSE (Q5U4C1), GASP1_RAT   (Q920R4), GCST_PSEAE  (Q9HTX5), 
GCST_PSEPK  (Q88CI7), GCST_PSESM  (Q88AS0), GPBAR_BOVIN (Q862A9), 
GSTU8_ARATH (Q9SR36), GSTX2_TOBAC (Q03663), GSTX3_TOBAC (Q03664), 
HOXQ_AZOVI  (P40594), HUPQ_AZOCH  (Q43957), HUTH_PHOLL  (Q7N296), 
HUTH_PSEFS  (Q8VMR3), HUTH_PSEPK  (Q88CZ7), HUTH_PSEPU  (P21310), 
HUTH_YERPE  (Q8ZA10), HUTH_YERPS  (Q664B8), HYBF_SALTI  (P64422), 
HYBF_SALTY  (P64421), INAA_ECOLI  (P27294), INT2_ARATH  (Q9C757), 
LBN_BOVIN   (Q8MI28), LGI3_HUMAN  (Q8N145), LGI3_MACFA  (Q4R4H3), 
LGI3_MOUSE  (Q8K406), LGI3_PANTR  (Q1EGL0), LGT_BACLD   (Q65EF1), 
LOXL2_XENLA (Q08B63), LPQB_THEFY  (Q47LZ5), MANBA_CAEEL (Q93324), 
MDTD_SERP5  (A8GHR1), ME3L2_HUMAN (A8K0S8), MED6_CRYNB  (P0CO75), 
MED6_CRYNJ  (P0CO74), MEIS3_HUMAN (Q99687), MEIS3_MOUSE (P97368), 
MEND_MYCVP  (A1T3R3), MGDG2_ARATH (O82730), MRC2_HUMAN  (Q9UBG0), 
MRC2_MOUSE  (Q64449), MRC2_RAT    (Q4TU93), MSHD_COREF  (Q8FMN5), 
MTAD_DESVH  (Q72B14), MTAD_DESVV  (A1VD37), MTM1_ARATH  (Q944H5), 
MUG60_SCHPO (O74359), MUTA_MYCBO  (P65486), MUTA_MYCTO  (P9WJK6), 
MUTA_MYCTU  (P9WJK7), NHAA1_CLAM3 (A5CM04), NHAB_ACTP2  (A3MZ40), 
NHAB_ACTP7  (B3H0G7), NHAB_ACTPJ  (B0BT71), NHAB_SHESH  (A8FW97), 
NLRC3_HUMAN (Q7RTR2), OBG_DESRM   (A4J7I9), OBG_PHEZH   (B4RD64), 
OPGH_ECO57  (P62518), OPGH_ECOL6  (Q8FIS3), OPGH_ECOLI  (P62517), 
OPGH_SALTI  (Q8Z7L8), OPGH_SALTY  (Q8ZQ26), OPGH_SHIFL  (P62519), 
PDXH_RHOSR  (Q0S6R1), PGM2_HUMAN  (Q96G03), PGM2_MOUSE  (Q7TSV4), 
PGM2_PONAB  (Q5RFI8), PHSA_ARATH  (Q9C6S4), PID9_FUSSO  (Q12645), 
PLXB1_HUMAN (O43157), PLXB1_MOUSE (Q8CJH3), PNCB_BURMA  (Q62LW1), 
PNCB_BURPS  (Q63S63), PNCB_METAC  (Q8TMW6), PNCB_METMA  (Q8PSJ3), 
PNCB_XYLFA  (Q9PED1), PNCB_XYLFT  (Q87EC4), POLG_ZYMVR  (Q89330), 
PQSA_PSEAE  (Q9I4X3), PRMC_BORPE  (Q7W022), PRND_PSEFL  (P95483), 
PROB2_RHILO (Q989S7), PROB_NITWN  (Q3SVI1), PTV3B_BACSU (P40739), 
R1AB_BC279  (P0C6V9), R1AB_BCHK3  (P0C6W2), R1AB_BCRP3  (P0C6W6), 
R1AB_CVHSA  (P0C6X7), R20K_CLOPA  (P23161), RDRP_CPMV1  (Q33339), 
RPOB_SPIOL  (P11703), S226B_XENLA (Q66J52), S22AK_MOUSE (Q80UJ1), 
S27A1_BOVIN (Q3ZKN0), S27A1_HUMAN (Q6PCB7), S27A1_MOUSE (Q60714), 
S27A1_RAT   (P97849), S27A4_HUMAN (Q6P1M0), S27A4_MACFA (Q4R3Y4), 
S27A4_MOUSE (Q91VE0), S27A4_PONAB (Q5RDY4), SCN60_DROME (Q9W0Y8), 
SHO1A_HORWE (D6PVB4), SHO1B_HORWE (D6PVB5), SHO1_AJECH  (C6HFQ7), 
SHO1_AJECN  (A6QTM4), SHO1_AJEDR  (C5GIQ8), SHO1_AJEDS  (C5JGE5), 
SHO1_ARTBC  (D4ARB8), SHO1_ARTOC  (C5FH98), SHO1_ASPCL  (A1CAL7), 
SHO1_ASPFC  (B0Y3Z4), SHO1_ASPFN  (B8NEM4), SHO1_ASPFU  (Q4WUG9), 
SHO1_ASPNC  (A2QGW1), SHO1_ASPOR  (Q2U7N9), SHO1_CANAL  (Q5AQ36), 
SHO1_CANAW  (C4YDC4), SHO1_CANDC  (B9W8T5), SHO1_CANTT  (C5MB30), 
SHO1_CHAGB  (Q2H3I7), SHO1_CLAL4  (C4Y1G1), SHO1_CLALS  (B8R1V5), 
SHO1_COLGM  (E3QNZ1), SHO1_DEBHA  (Q6BVC2), SHO1_EMENI  (Q5AVI2), 
SHO1_LEPMJ  (E5AD87), SHO1_LODEL  (A5E1V8), SHO1_MAGO7  (Q2KEW0), 
SHO1_METAR  (E9EM69), SHO1_NECH7  (C7Z504), SHO1_NEOFI  (A1DEZ0), 
SHO1_NEUCR  (Q7SGL6), SHO1_PARBD  (C1GJ63), SHO1_PARBP  (C0S7Q7), 
SHO1_PENCW  (B6HR44), SHO1_PENMQ  (B6QEE0), SHO1_PICGU  (A5DR93), 
SHO1_PODAN  (B2ANF9), SHO1_PYRTR  (B2VV00), SHO1_PYRTT  (E3RIP0), 
SHO1_SCLS1  (A7F1F4), SHO1_SORMK  (D1ZRK4), SHO1_TALSN  (B8MD74), 
SHO1_TRIVH  (D4DA58), SHO1_UNCRE  (C4JLG3), SHO1_VERA1  (C9SA05), 
SHO1_YARLI  (Q6CAC5), SINL2_ARATH (Q9C6H3), SPNS1_BOVIN (Q08DX7), 
SPNS1_MOUSE (Q8R0G7), SPNS1_RAT   (Q2YDU8), SPNS2_XENTR (B0JZE1), 
SPNS3_MOUSE (Q9D232), SUH_DROME   (P28159), SYE_RALPJ   (B2U9R2), 
SYFM_HUMAN  (O95363), SYFM_MOUSE  (Q99M01), SYFM_RAT    (Q6AYQ3), 
SYVC_ENCCU  (Q8SS27), TAMA_CITRI  (D2TN56), TAMA_ECO57  (P0ADE5), 
TAMA_ECOLI  (P0ADE4), TAMA_SALTS  (E1WAU4), TERA_ALCSP  (P18778), 
TIM17_SCHPO (P87130), TIM17_YEAST (P39515), TINAL_HUMAN (Q9GZM7), 
TINAL_MOUSE (Q99JR5), TINAL_RAT   (Q9EQT5), TMCA_AERPE  (Q9YBQ6), 
TMCA_PHOAA  (C7BGY4), TNPO_DICDI  (Q55CQ7), TPRGL_BOVIN (Q32LJ4), 
TPRGL_HUMAN (Q5T0D9), TPRGL_MOUSE (Q9DBS2), TPRGL_RAT   (A8WCF8), 
TPS3_YEAST  (P38426), TRMB_BACLD  (Q65G12), TRMB_CLOTH  (A3DBL4), 
TRMB_LISMF  (Q71Z52), TRMB_LISMO  (Q8Y6R8), UBR2_HUMAN  (Q8IWV8), 
UBR2_MOUSE  (Q6WKZ8), UHRF1_MOUSE (Q8VDF2), UHRF1_RAT   (Q7TPK1), 
UREF_SACD2  (Q21P92), VE4_HPV47   (P22421), VE6_HPV41   (P27555), 
VIF_SIVMK   (P05902), VM2FL_PROFL (P18619), VM3SB_TRIST (Q3HTN2), 
WDR33_HUMAN (Q9C0J8), WDR33_MOUSE (Q8K4P0), WHIA_BIFA0  (B8DUH3), 
Y1903_DEIRA (Q9RT62), Y260_TREPA  (O83284), Y2886_MYCTO (P9WL34), 
Y2886_MYCTU (P9WL35), Y2910_MYCBO (P65046), Y387_HAEIN  (P44680), 
Y610_PARUW  (Q6MDL5)
» More

PDB
[Detailed view]
195 PDB

1AQB; 1B0O; 1B8E; 1BBP; 1BEB; 1BRP; 1BRQ; 1BSO; 1BSQ; 1BSY; 1CJ5; 1DF3; 1DFV; 1DV9; 1EPA; 1EPB; 1ERB; 1EW3; 1EXS; 1FEL; 1FEM; 1FEN; 1G85; 1GKA; 1GM6; 1GT1; 1GT3; 1GT4; 1GT5; 1GX8; 1GX9; 1GXA; 1HBP; 1HBQ; 1HN2; 1I04; 1I05; 1I06; 1IIU; 1IW2; 1JV4; 1JYD; 1JYJ; 1JZU; 1KT3; 1KT4; 1KT5; 1KT6; 1KT7; 1KXO; 1L6M; 1LF7; 1LKE; 1LNM; 1MUP; 1N0S; 1NGL; 1OBP; 1PBO; 1QAB; 1QG5; 1QQS; 1QWD; 1QY0; 1QY1; 1QY2; 1RBP; 1RLB; 1T0V; 1UZ2; 1X71; 1X89; 1X8U; 1YP6; 1YP7; 1YUP; 1Z24; 1ZND; 1ZNE; 1ZNG; 1ZNH; 1ZNK; 1ZNL; 2A2G; 2A2U; 2ACO; 2AKQ; 2BLG; 2DM5; 2E4J; 2GJ5; 2KT4; 2KTD; 2L9C; 2LB6; 2LBV; 2NND; 2NNE; 2OVA; 2OVD; 2OVE; 2OZQ; 2Q2M; 2Q2P; 2Q39; 2QOS; 2R56; 2RD7; 2RQ0; 2WQ9; 2WQA; 2WR6; 2WWP; 2XST; 3BLG; 3BSZ; 3BY0; 3CBC; 3CMP; 3CQN; 3CQR; 3DSZ; 3DTQ; 3FIQ; 3FMZ; 3FW4; 3FW5; 3HWD; 3HWE; 3HWF; 3HWG; 3I0A; 3K3L; 3KFF; 3KFG; 3KFH; 3KFI; 3KZA; 3L4R; 3MBT; 3NPO; 3NQ3; 3NQ9; 3O19; 3O22; 3O2Y; 3OJY; 3PEC; 3PED; 3PH5; 3PH6; 3QKG; 3S26; 3T1D; 3TF6; 3TZS; 3U03; 3U0D; 3U9P; 3UEU; 3UEV; 3UEW; 3UEX; 4DQ3; 4DQ4; 4ES7; 4GH7; 4GNY; 4IAW; 4IAX; 4IB6; 4IB7; 4IB8; 4IB9; 4IBA; 4IMN; 4IMO; 4K19; 4KII; 4LZU; 4LZV; 4NLI; 4NLJ; 4O9S; 4ORR; 4ORS; 4ORU; 4ORW; 4ORX; 4ORY; 4OS0; 4OS3; 4OS8; 4PSQ; 4TLJ
» More

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