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| Entry: PS00226 |
| General information about the entry | |
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| Entry name | IF |
| Accession number | PS00226 |
| Entry type | PATTERN |
| Date | APR-1990 (CREATED); DEC-2004 (DATA UPDATE); MAR-2013 (INFO UPDATE). |
| PROSITE Documentation | PDOC00198 |
| Name and characterization of the entry | |
| Description | Intermediate filaments signature. |
| Pattern | [IV]-{K}-[TACI]-Y-[RKH]-{E}-[LM]-L-[DE]. |
| Numerical results | |
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| Comments | |
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| Cross-references | |
| UniProtKB/Swiss-Prot | True positive hits:AINX_BOVIN (Q08DH7), AINX_HUMAN (Q16352), AINX_MOUSE (P46660), AINX_RAT (P23565), AV71_ACAVI (Q17107), DESM_BOVIN (O62654), DESM_CANFA (Q5XFN2), DESM_CHICK (P02542), DESM_HUMAN (P17661), DESM_MESAU (P02541), DESM_MOUSE (P31001), DESM_PIG (P02540), DESM_RAT (P48675), DESM_XENLA (P23239), GFAP_BOVIN (Q28115), GFAP_CARAU (P48677), GFAP_DANRE (Q58EE9), GFAP_HUMAN (P14136), GFAP_MOUSE (P03995), GFAP_PONAB (Q5RA72), GFAP_RAT (P47819), IF3T_TORCA (P23729), IFA1_CAEEL (P90901), IFA4_CAEEL (P90900), IFB1_CAEEL (Q19289), IFEA_ASCSU (P23730), IFEA_HELAS (P22488), IFEA_HELPO (P16274), IFEB_ASCSU (P23731), IFEB_HELPO (P16275), IFE_BRALA (Q04948), ION3_CARAU (P18520), K118A_POLSE (A1KQY9), K118A_XENLA (P08802), K118B_XENLA (Q7SY65), K121P_HUMAN (A6NCN2), K1C0_XENLA (P02537), K1C10_BOVIN (P06394), K1C10_CANFA (Q6EIZ0), K1C10_HUMAN (P13645), K1C10_MOUSE (P02535), K1C10_RAT (Q6IFW6), K1C11_LAMFL (Q8AWA7), K1C11_PROAT (Q5K2P6), K1C12_HUMAN (Q99456), K1C12_MOUSE (Q64291), K1C12_RABIT (Q28706), K1C12_RAT (Q6IFW5), K1C13_HUMAN (P13646), K1C13_MOUSE (P08730), K1C13_PROAT (Q5K2P4), K1C13_RAT (Q6IFV4), K1C14_BOVIN (P05785), K1C14_CHICK (Q6PVZ1), K1C14_HUMAN (P02533), K1C14_MOUSE (Q61781), K1C14_RAT (Q6IFV1), K1C15_HUMAN (P19012), K1C15_MOUSE (Q61414), K1C15_PROAT (Q5K2P2), K1C15_RAT (Q6IFV3), K1C15_SHEEP (O77727), K1C16_HUMAN (P08779), K1C16_MOUSE (Q9Z2K1), K1C17_BOVIN (A1L595), K1C17_HUMAN (Q04695), K1C17_MOUSE (Q9QWL7), K1C17_PANTR (A5A6M0), K1C17_RAT (Q6IFU8), K1C18_ACIBE (Q7SYF8), K1C18_CARAU (Q07427), K1C18_DANRE (Q7ZTS4), K1C18_HUMAN (P05783), K1C18_MOUSE (P05784), K1C18_ONCMY (O57607), K1C18_RAT (Q5BJY9), K1C18_SCYST (O57611), K1C18_XENTR (Q6P864), K1C19_BOVIN (P08728), K1C19_CHICK (O93256), K1C19_HUMAN (P08727), K1C19_MOUSE (P19001), K1C19_PONAB (Q5R8S9), K1C19_POTTR (P51856), K1C19_RAT (Q63279), K1C1_XENLA (P08777), K1C20_BOVIN (A6QQQ9), K1C20_HUMAN (P35900), K1C20_MOUSE (Q9D312), K1C20_RAT (P25030), K1C23_HUMAN (Q9C075), K1C23_MOUSE (Q99PS0), K1C24_HUMAN (Q2M2I5), K1C39_HUMAN (Q6A163), K1C39_MOUSE (Q6IFX4), K1C39_RAT (Q6IFW3), K1C40_MOUSE (Q6IFX3), K1C40_RAT (Q6IFW2), K1C42_MOUSE (Q6IFX2), K1C42_RAT (Q6IFU7), K1C4_XENLA (P05781), K1C5_XENLA (P08778), K1C9_HUMAN (P35527), K1C9_RAT (Q8CIS9), K1H1_HUMAN (Q15323), K1H1_MOUSE (Q61765), K1H1_PANTR (A5A6M5), K1H2_HUMAN (Q14532), K1H2_MOUSE (Q62168), K1M1_SHEEP (P02534), K1M2_SHEEP (P25690), K22E_CANFA (Q6EIZ1), K22E_HUMAN (P35908), K22E_MOUSE (Q3TTY5), K22E_RAT (Q6IG02), K22O_HUMAN (Q01546), K22O_MOUSE (Q3UV17), K2C1B_HUMAN (Q7Z794), K2C1B_MOUSE (Q6IFZ6), K2C1_CANFA (Q6EIY9), K2C1_HUMAN (P04264), K2C1_MOUSE (P04104), K2C1_PANTR (A5A6M6), K2C1_RAT (Q6IMF3), K2C1_XENLA (P04266), K2C2_XENLA (P04265), K2C3_BOVIN (P04261), K2C3_HUMAN (P12035), K2C3_RABIT (Q29426), K2C4_BOVIN (P04260), K2C4_HUMAN (P19013), K2C4_MOUSE (P07744), K2C4_RAT (Q6IG00), K2C5_BOVIN (Q5XQN5), K2C5_HUMAN (P13647), K2C5_MOUSE (Q922U2), K2C5_PANTR (A5A6M8), K2C5_RAT (Q6P6Q2), K2C5_XENLA (P16878), K2C6A_HUMAN (P02538), K2C6A_MOUSE (P50446), K2C6A_RAT (Q4FZU2), K2C6B_HUMAN (P04259), K2C6B_MOUSE (Q9Z331), K2C6C_HUMAN (P48668), K2C71_BOVIN (Q148H5), K2C71_HUMAN (Q3SY84), K2C71_MOUSE (Q9R0H5), K2C71_PONAB (Q5RCY8), K2C72_BOVIN (Q148H8), K2C72_HUMAN (Q14CN4), K2C72_MOUSE (Q6IME9), K2C72_RAT (Q6IG04), K2C73_BOVIN (A7YWK3), K2C73_HUMAN (Q86Y46), K2C73_MOUSE (Q6NXH9), K2C73_RAT (Q6IG03), K2C74_HUMAN (Q7RTS7), K2C74_MOUSE (Q6IFZ9), K2C75_BOVIN (Q08D91), K2C75_HUMAN (O95678), K2C75_MOUSE (Q8BGZ7), K2C75_RAT (Q6IG05), K2C78_BOVIN (A6QNX5), K2C78_HUMAN (Q8N1N4), K2C79_BOVIN (Q148H7), K2C79_HUMAN (Q5XKE5), K2C79_MOUSE (Q8VED5), K2C7_BOVIN (Q29S21), K2C7_HUMAN (P08729), K2C7_MOUSE (Q9DCV7), K2C7_PANTR (A5A6N0), K2C7_POTTR (Q8HZR5), K2C7_RAT (Q6IG12), K2C8_BOVIN (P05786), K2C8_DANRE (Q6NWF6), K2C8_HUMAN (P05787), K2C8_MOUSE (P11679), K2C8_PROAT (Q5K2N3), K2C8_RAT (Q10758), K2C8_XENLA (P08776), K2CA_BOVIN (P04263), K2CB_BOVIN (P04262), K2CO_CHICK (O93532), K2M2_SHEEP (P15241), K2M3_SHEEP (P25691), KRT34_HUMAN (O76011), KRT34_MOUSE (Q9D646), KRT35_BOVIN (Q0P5J7), KRT35_HUMAN (Q92764), KRT35_MOUSE (Q497I4), KRT35_SHEEP (B0LKP1), KRT36_HUMAN (O76013), KRT36_MOUSE (B1AQ75), KRT37_HUMAN (O76014), KRT38_HUMAN (O76015), KRT81_BOVIN (Q148H4), KRT81_HUMAN (Q14533), KRT81_MOUSE (Q9ERE2), KRT82_HUMAN (Q9NSB4), KRT82_MOUSE (Q99M74), KRT83_BOVIN (A4FUZ0), KRT83_HUMAN (P78385), KRT83_MOUSE (Q6IMF0), KRT84_HUMAN (Q9NSB2), KRT84_MOUSE (Q99M73), KRT85_HUMAN (P78386), KRT85_MOUSE (Q9Z2T6), KRT86_HUMAN (O43790), KRT86_MOUSE (P97861), KT222_BOVIN (Q2KI75), KT222_HUMAN (Q8N1A0), KT222_MOUSE (Q8CCX5), KT33A_HUMAN (O76009), KT33A_MOUSE (Q8K0Y2), KT33A_PANTR (A5A6P3), KT33B_HUMAN (Q14525), KT33B_MOUSE (Q61897), LAML1_XENLA (P09010), LAML2_XENLA (P21910), LAML3_XENLA (P10999), LMNA_CHICK (P13648), LMNA_HUMAN (P02545), LMNA_MOUSE (P48678), LMNA_PIG (Q3ZD69), LMNA_RAT (P48679), LMNA_XENLA (P11048), LMNB1_CHICK (P14731), LMNB1_HUMAN (P20700), LMNB1_MOUSE (P14733), LMNB1_RAT (P70615), LMNB2_CHICK (P14732), LMNB2_HUMAN (Q03252), LMNB2_MOUSE (P21619), NEST_DANRE (P86839), NEST_HUMAN (P48681), NEST_MESAU (Q9Z1Q1), NEST_MOUSE (Q6P5H2), NEST_RAT (P21263), NF60_DORPE (Q01240), NF70_DORPE (Q01241), NFH_HUMAN (P12036), NFH_MOUSE (P19246), NFH_RAT (P16884), NFL_BOVIN (P02548), NFL_COTJA (Q02916), NFL_HUMAN (P07196), NFL_MOUSE (P08551), NFL_PIG (P02547), NFL_PONAB (Q5R408), NFL_RAT (P19527), NFL_XENLA (P35616), NFL_XENTR (B4F721), NFM_BOVIN (O77788), NFM_CHICK (P16053), NFM_HUMAN (P07197), NFM_MOUSE (P08553), NFM_PIG (P08552), NFM_RABIT (P54938), NFM_RAT (P12839), OV71_ONCVO (P31732), PERI_BOVIN (A6QQJ3), PERI_HUMAN (P41219), PERI_MOUSE (P15331), PERI_RAT (P21807), PERI_XENLA (P48676), PLST_CARAU (P31393), RGP51_LYMST (Q6QUW1), SYNEM_HUMAN (O15061), SYNEM_MOUSE (Q70IV5), TANA_XENLA (Q01550), TBFA_EPTST (Q90501), TBFG_EPTST (Q90502), VIM1_CARAU (P48671), VIM1_XENLA (P24789), VIM2_CARAU (P48672), VIM4_XENLA (P24790), VIMB_CARAU (P48673), VIME_BOVIN (P48616), VIME_CHICK (P09654), VIME_CHLAE (P84198), VIME_CRIGR (P48670), VIME_CYPCA (Q92155), VIME_HUMAN (P08670), VIME_MACFA (Q4R4X4), VIME_MESAU (P02544), VIME_MOUSE (P20152), VIME_ONCMY (P48674), VIME_PANTR (Q5R1W8), VIME_PIG (P02543), VIME_RAT (P31000), XNIF_XENLA (P35617)False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile): BFSP1_BOVIN (Q06002), BFSP1_CHICK (Q06637), BFSP1_HUMAN (Q12934), BFSP1_MOUSE (A2AMT1), BFSP1_RAT (Q02435), BFSP2_BOVIN (Q28177), BFSP2_HUMAN (Q13515), BFSP2_MOUSE (Q6NVD9), IFA2_CAEEL (O02365), IFA3_CAEEL (Q21065), IFB2_CAEEL (Q19286), IFC1_CAEEL (O45168), IFC2_CAEBR (Q5WN60), IFC2_CAEEL (Q21067), IFD1_CAEEL (Q86DC6), IFD2_CAEEL (Q19782), IFP1_CAEEL (Q09501), K1C13_ONCMY (Q8JFQ6), K1C1_CARAU (Q90303), K1C24_MOUSE (A1L317), K1C24_RAT (Q6IFX1), K1C25_BOVIN (Q0P5J4), K1C25_CAPHI (Q6R650), K1C25_HUMAN (Q7Z3Z0), K1C25_MOUSE (Q8VCW2), K1C25_PANTR (A5A6N2), K1C25_RAT (Q6IFX0), K1C25_SHEEP (Q9BGM5), K1C26_BOVIN (A6H712), K1C26_HUMAN (Q7Z3Y9), K1C26_MOUSE (Q3TRJ4), K1C27_BOVIN (Q0P5J6), K1C27_CAPHI (Q6R649), K1C27_HUMAN (Q7Z3Y8), K1C27_MOUSE (Q9Z320), K1C27_RAT (Q6IFW8), K1C28_BOVIN (Q148H6), K1C28_HUMAN (Q7Z3Y7), K1C28_MOUSE (A6BLY7), K1C40_BOVIN (A7YWM2), K1C40_HUMAN (Q6A162), K1C9_CANFA (O18740), K1C9_MOUSE (Q6RHW0), K2C1B_RAT (Q6IG01), K2C74_BOVIN (A3KN27), K2C80_BOVIN (A0JND2), K2C80_HUMAN (Q6KB66), K2C80_MOUSE (Q0VBK2), K2C80_RAT (Q6IMF1), LAM0_DROME (P08928), LAMC_DROME (Q03427), LMN1_CAEEL (Q21443), SYNCI_HUMAN (Q9H7C4), SYNCI_MOUSE (Q9EPM5)`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences): K1C19_MESAU (P86246), K1C20_PIG (Q29218), K1C3_XENLA (P05782), K2C8_MESAU (P86247), K2C8_POTTR (Q28810), K2M1_SHEEP (P02539), KRT_CEREL (P86498), NFH_PIG (P12037), VIME_SHEEP (Q9MZA9)False positive hits (sequences which do not belong to the set under consideration): ADDB_DESRM (A4J4E2), AIM6_CANGA (Q6FWH9), ATPG_DESVH (Q72E03), BAH_STRHY (Q01109), CEMA_PSEAK (Q3ZJ15), FAB1D_ARATH (Q9XID0), GLYL3_HUMAN (Q5SZD4), LIX1_CHICK (Q8UVV7), LIX1_HUMAN (Q8N485), LIX1_MOUSE (Q6P566), LPH_RABIT (P09849), MEND_NOCSJ (A1SE17), OGRL1_XENTR (A2VCV0), PPR36_ARATH (Q0WKV3), RFBF_BACSU (O06486), RS10_NOVAD (Q2G8Y1), RS10_SACD2 (Q21M58), TYSY_SYMTH (Q67JQ1), YO91_CAEEL (P41842)Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits: [Clustal format, color, condensed view]
[Clustal format, color]
[Clustal format, plain text]
[Fasta format]
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| PDB [Detailed view] |
1GK4; 1GK6; 1X8Y; 2XV5; 3TNU; 3TYY; 3V4Q; 3V4W; 3V5B; |
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